Wall clock time and date at job start Tue Mar 31 2020 19:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 110.54242 * 2 1 4 4 O 1.21287 * 119.99800 * 238.54612 * 3 2 1 5 5 N 1.34783 * 120.00084 * 58.53579 * 3 2 1 6 6 C 1.46927 * 120.54778 * 185.03729 * 5 3 2 7 7 C 1.52914 * 108.92080 * 234.31948 * 6 5 3 8 8 C 1.52109 * 109.50817 * 306.92762 * 7 6 5 9 9 C 1.54396 * 110.51124 * 295.78116 * 8 7 6 10 10 C 1.54454 * 102.87258 * 276.65818 * 9 8 7 11 11 N 1.47079 * 107.29755 * 338.49792 * 10 9 8 12 12 C 1.36938 * 125.62803 * 179.02962 * 11 10 9 13 13 H 1.08002 * 119.99844 * 174.79824 * 12 11 10 14 14 C 1.38807 * 120.00111 * 354.80261 * 12 11 10 15 15 N 1.31620 * 120.00173 * 6.90448 * 14 12 11 16 16 Si 1.86801 * 120.00080 * 186.90785 * 14 12 11 17 17 H 1.48502 * 109.47278 * 94.98858 * 16 14 12 18 18 H 1.48498 * 109.47119 * 214.98743 * 16 14 12 19 19 H 1.48503 * 109.47374 * 334.98693 * 16 14 12 20 20 C 1.47579 * 108.74475 * 359.01552 * 11 10 9 21 21 C 1.52110 * 111.59902 * 59.17846 * 8 7 6 22 22 C 1.46924 * 120.54942 * 5.31814 * 5 3 2 23 23 C 1.54632 * 110.48509 * 122.60465 * 2 1 3 24 24 C 1.54485 * 101.76505 * 143.47767 * 23 2 1 25 25 N 1.46760 * 105.47151 * 334.58850 * 24 23 2 26 26 C 1.34414 * 111.30285 * 17.01381 * 25 24 23 27 27 O 1.21283 * 124.94461 * 179.32535 * 26 25 24 28 28 H 1.09002 * 109.47162 * 177.70965 * 1 2 3 29 29 H 1.08999 * 109.47547 * 297.71389 * 1 2 3 30 30 H 1.09000 * 109.46774 * 57.71462 * 1 2 3 31 31 H 1.09002 * 109.60270 * 354.12104 * 6 5 3 32 32 H 1.08999 * 109.60173 * 114.60313 * 6 5 3 33 33 H 1.09000 * 109.54048 * 186.85685 * 7 6 5 34 34 H 1.08998 * 109.33622 * 66.87797 * 7 6 5 35 35 H 1.09000 * 110.73416 * 35.00791 * 9 8 7 36 36 H 1.09003 * 110.72527 * 158.31279 * 9 8 7 37 37 H 1.09000 * 109.87738 * 97.93141 * 10 9 8 38 38 H 1.09009 * 109.87776 * 219.07756 * 10 9 8 39 39 H 0.97001 * 120.00359 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.37238 * 264.49036 * 20 11 10 41 41 H 1.09006 * 110.37435 * 142.14026 * 20 11 10 42 42 H 1.08996 * 109.47191 * 180.69953 * 21 8 7 43 43 H 1.09001 * 109.47830 * 60.68708 * 21 8 7 44 44 H 1.09000 * 109.59871 * 245.39347 * 22 5 3 45 45 H 1.09003 * 109.60055 * 5.86725 * 22 5 3 46 46 H 1.09004 * 110.96851 * 25.36211 * 23 2 1 47 47 H 1.09000 * 110.97294 * 261.59806 * 23 2 1 48 48 H 1.09001 * 110.24534 * 215.58743 * 24 23 2 49 49 H 1.08997 * 110.24421 * 93.58894 * 24 23 2 50 50 H 0.97003 * 124.34561 * 197.03923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 8 2.7848 1.7867 -0.8961 5 7 1.7247 2.2561 0.9956 6 6 2.1420 3.6641 0.9517 7 6 2.8900 4.0001 2.2423 8 6 2.0363 3.6121 3.4400 9 6 0.7448 4.4571 3.4802 10 6 1.2056 5.7571 4.1754 11 7 2.4278 5.4400 4.9296 12 6 3.1609 6.3282 5.6705 13 1 3.9981 5.9802 6.2575 14 6 2.8281 7.6758 5.6673 15 7 1.7307 8.0812 5.0641 16 14 3.9376 8.9140 6.5189 17 1 4.8715 9.5059 5.5275 18 1 3.1089 9.9889 7.1214 19 1 4.7144 8.2317 7.5848 20 6 2.7336 4.0067 4.7565 21 6 1.7023 2.1281 3.4322 22 6 0.9426 1.7828 2.1458 23 6 2.0711 -0.7805 1.2203 24 6 3.3199 -1.4686 0.6255 25 7 3.0564 -1.5817 -0.8138 26 6 2.0596 -0.7639 -1.1935 27 8 1.6480 -0.6508 -2.3288 28 1 -0.3633 -1.0269 -0.0411 29 1 -0.3634 0.4779 0.9097 30 1 -0.3633 0.5489 -0.8688 31 1 2.7998 3.8242 0.0973 32 1 1.2634 4.3033 0.8645 33 1 3.0978 5.0696 2.2754 34 1 3.8285 3.4464 2.2702 35 1 0.3878 4.6646 2.4714 36 1 -0.0251 3.9572 4.0680 37 1 1.4189 6.5214 3.4281 38 1 0.4303 6.1080 4.8566 39 1 1.4979 9.0228 5.0621 40 1 2.3293 3.4293 5.5879 41 1 3.8101 3.8553 4.6761 42 1 1.0812 1.8910 4.2959 43 1 2.6239 1.5479 3.4769 44 1 -0.0307 2.2735 2.1529 45 1 0.8097 0.7030 2.0782 46 1 1.3460 -1.5181 1.5643 47 1 2.3470 -0.1012 2.0268 48 1 3.4503 -2.4579 1.0641 49 1 4.2059 -0.8581 0.7999 50 1 3.5393 -2.1713 -1.4139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035224993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:40 Heat of formation + Delta-G solvation = -57.363306 kcal Electronic energy + Delta-G solvation = -31187.059830 eV Core-core repulsion = 27213.951731 eV Total energy + Delta-G solvation = -3973.108099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.58684 -40.97230 -39.55732 -37.61493 -37.19323 -35.11342 -34.20717 -32.40879 -31.87248 -30.40282 -29.78179 -28.36134 -26.63891 -25.91481 -24.72526 -24.05428 -23.09458 -22.31689 -21.81410 -20.27601 -19.31243 -18.61011 -18.33876 -17.85832 -17.47937 -16.77371 -16.51532 -16.27924 -15.96468 -15.84676 -15.62372 -15.14550 -14.95795 -14.79632 -14.73799 -14.56120 -14.26241 -14.11312 -13.87270 -13.64484 -13.42010 -13.33413 -13.12059 -12.93634 -12.79357 -12.69978 -12.49237 -12.19666 -12.16759 -12.13942 -11.97856 -11.92777 -11.76833 -11.43429 -11.19626 -11.05049 -10.99634 -10.70176 -10.63331 -10.11355 -9.65424 -8.81528 -7.83196 -5.15360 1.29544 1.44591 1.45173 1.46924 1.55135 2.01470 2.39784 2.50959 3.06120 3.34554 3.37672 3.42232 3.65463 3.75847 3.80020 3.92350 3.93636 4.07778 4.16009 4.26206 4.30772 4.38185 4.53172 4.63085 4.67534 4.69754 4.74547 4.75469 4.77137 4.80058 4.85528 4.88435 4.99972 5.03215 5.05087 5.14219 5.17277 5.19135 5.24151 5.42504 5.47251 5.51403 5.65992 5.76870 5.79203 5.86071 5.95564 6.24793 6.34303 7.01636 7.15057 7.18338 7.84387 8.48443 9.27274 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002767 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.549242 B =10115.707261 C =10152.756624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.532 3.468 4 O -0.587 6.587 5 N -0.592 5.592 6 C 0.120 3.880 7 C -0.100 4.100 8 C -0.057 4.057 9 C -0.120 4.120 10 C 0.186 3.814 11 N -0.626 5.626 12 C -0.237 4.237 13 H 0.080 0.920 14 C -0.066 4.066 15 N -0.949 5.949 16 Si 0.970 3.030 17 H -0.292 1.292 18 H -0.296 1.296 19 H -0.267 1.267 20 C 0.141 3.859 21 C -0.111 4.111 22 C 0.088 3.912 23 C -0.128 4.128 24 C 0.094 3.906 25 N -0.721 5.721 26 C 0.534 3.466 27 O -0.573 6.573 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.003 0.997 38 H -0.002 1.002 39 H 0.244 0.756 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.131 0.869 46 H 0.139 0.861 47 H 0.115 0.885 48 H 0.126 0.874 49 H 0.068 0.932 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -24.991 -3.938 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C 0.320 3.680 4 O -0.468 6.468 5 N -0.323 5.323 6 C -0.003 4.003 7 C -0.139 4.139 8 C -0.058 4.058 9 C -0.158 4.158 10 C 0.061 3.939 11 N -0.352 5.352 12 C -0.366 4.366 13 H 0.098 0.902 14 C -0.259 4.259 15 N -0.598 5.598 16 Si 0.799 3.201 17 H -0.219 1.219 18 H -0.223 1.223 19 H -0.191 1.191 20 C 0.016 3.984 21 C -0.149 4.149 22 C -0.032 4.032 23 C -0.165 4.165 24 C -0.030 4.030 25 N -0.375 5.375 26 C 0.318 3.682 27 O -0.452 6.452 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.022 0.978 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.149 0.851 46 H 0.157 0.843 47 H 0.133 0.867 48 H 0.144 0.856 49 H 0.086 0.914 50 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.581 -24.459 -4.827 25.064 hybrid contribution 1.032 1.701 -0.151 1.995 sum -1.549 -22.758 -4.978 23.348 Atomic orbital electron populations 1.22013 0.88146 1.05055 1.04327 1.21620 1.00750 0.91922 0.97888 1.20346 0.79575 0.86960 0.81152 1.90728 1.39053 1.78501 1.38479 1.48016 1.53626 1.09280 1.21405 1.21440 0.99500 0.81374 0.97981 1.21395 0.98234 1.00652 0.93580 1.20955 0.94904 0.96240 0.93698 1.22793 0.96981 0.95647 1.00378 1.20897 0.87067 0.93504 0.92449 1.44804 1.28040 1.05415 1.56929 1.19425 1.08614 0.88309 1.20255 0.90242 1.25576 0.99227 0.98792 1.02292 1.70198 1.25401 1.14164 1.50050 0.85178 0.78040 0.78946 0.77939 1.21897 1.22332 1.19140 1.21723 0.97299 0.84306 0.95055 1.21772 1.02021 0.92841 0.98291 1.22597 0.94775 1.02695 0.83169 1.23251 0.98271 1.00274 0.94703 1.22407 0.98111 1.04038 0.78415 1.46179 1.35918 1.43000 1.12393 1.20507 0.79834 0.79262 0.88547 1.90698 1.63441 1.67569 1.23491 0.88823 0.87364 0.93642 0.91275 0.90764 0.93355 0.92009 0.90885 0.90002 0.97832 0.98403 0.94666 0.94945 0.94830 0.87839 0.90004 0.89435 0.85143 0.84323 0.86721 0.85585 0.91382 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.07 71.98 0.58 -1.27 16 2 C -0.12 -2.02 0.55 -52.94 -0.03 -2.05 16 3 C 0.53 13.59 6.48 87.66 0.57 14.16 16 4 O -0.59 -21.49 15.51 -3.05 -0.05 -21.53 16 5 N -0.59 -12.81 2.96 -819.14 -2.42 -15.23 16 6 C 0.12 3.29 6.11 86.27 0.53 3.82 16 7 C -0.10 -3.03 4.84 30.27 0.15 -2.88 16 8 C -0.06 -1.57 0.55 -51.92 -0.03 -1.60 16 9 C -0.12 -3.77 4.92 31.56 0.16 -3.61 16 10 C 0.19 8.77 5.00 86.76 0.43 9.20 16 11 N -0.63 -30.68 3.39 -692.75 -2.35 -33.03 16 12 C -0.24 -13.05 10.27 84.03 0.86 -12.19 16 13 H 0.08 4.21 7.84 -2.91 -0.02 4.18 16 14 C -0.07 -3.74 5.48 84.86 0.46 -3.28 16 15 N -0.95 -57.12 10.36 21.65 0.22 -56.90 16 16 Si 0.97 45.88 29.56 68.60 2.03 47.91 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 18 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C 0.14 5.11 6.15 86.55 0.53 5.64 16 21 C -0.11 -1.78 4.69 30.41 0.14 -1.63 16 22 C 0.09 1.17 3.68 86.41 0.32 1.49 16 23 C -0.13 -0.89 4.83 31.65 0.15 -0.74 16 24 C 0.09 0.75 7.78 86.83 0.68 1.43 16 25 N -0.72 -11.29 6.24 -459.82 -2.87 -14.16 16 26 C 0.53 12.97 6.47 87.90 0.57 13.54 16 27 O -0.57 -19.84 17.87 -3.04 -0.05 -19.89 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.83 5.16 -2.39 -0.01 0.82 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 2.20 6.99 -2.39 -0.02 2.18 16 32 H 0.07 2.02 6.55 -2.39 -0.02 2.01 16 33 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.12 6.18 -2.39 -0.01 2.11 16 36 H 0.08 2.20 7.98 -2.39 -0.02 2.19 16 37 H 0.00 0.19 7.29 -2.39 -0.02 0.17 16 38 H 0.00 -0.12 7.61 -2.38 -0.02 -0.14 16 39 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.03 1.11 7.99 -2.39 -0.02 1.09 16 41 H 0.03 1.23 8.03 -2.38 -0.02 1.21 16 42 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 43 H 0.08 1.12 7.61 -2.39 -0.02 1.10 16 44 H 0.09 1.07 7.59 -2.39 -0.02 1.06 16 45 H 0.13 0.83 3.15 -2.39 -0.01 0.82 16 46 H 0.14 -0.03 7.91 -2.38 -0.02 -0.05 16 47 H 0.11 0.63 5.37 -2.39 -0.01 0.62 16 48 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.42 5.38 8.96 -92.71 -0.83 4.55 16 Total: -1.00 -86.25 370.20 0.72 -85.53 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.13 Total: 7.26 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.07 Total: 20.03 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -7.41 Total: -119.31 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.43 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -86.25 0.72 -85.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035224993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.168 kcal (2) G-P(sol) polarization free energy of solvation -86.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds