Wall clock time and date at job start Tue Mar 31 2020 18:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36771 * 125.80210 * 2 1 4 4 C 1.47267 * 126.93680 * 359.97438 * 3 2 1 5 5 O 1.21620 * 120.00082 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00124 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47094 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.50992 * 304.99782 * 8 7 6 10 10 C 1.53295 * 109.50878 * 184.89616 * 8 7 6 11 11 N 1.47148 * 108.38413 * 187.77257 * 10 8 7 12 12 C 1.36936 * 120.98386 * 230.56169 * 11 10 8 13 13 H 1.07991 * 120.00244 * 26.23812 * 12 11 10 14 14 C 1.38818 * 119.99918 * 206.24303 * 12 11 10 15 15 N 1.31618 * 120.00106 * 16.90186 * 14 12 11 16 16 Si 1.86802 * 120.00078 * 196.90635 * 14 12 11 17 17 H 1.48501 * 109.47032 * 89.99451 * 16 14 12 18 18 H 1.48500 * 109.46914 * 209.99856 * 16 14 12 19 19 H 1.48507 * 109.46916 * 329.99824 * 16 14 12 20 20 C 1.47154 * 118.03566 * 50.53754 * 11 10 8 21 21 C 1.53296 * 108.38273 * 309.46676 * 20 11 10 22 22 O 1.42955 * 109.26831 * 52.27518 * 21 20 11 23 23 C 1.46685 * 106.11982 * 180.02562 * 3 2 1 24 24 C 1.34484 * 106.32960 * 359.97438 * 23 3 2 25 25 N 1.34660 * 125.80357 * 179.69337 * 2 1 3 26 26 C 1.46495 * 124.84903 * 359.96016 * 25 2 1 27 27 C 1.53001 * 109.47251 * 120.00449 * 26 25 2 28 28 C 1.53007 * 109.47216 * 239.99974 * 26 25 2 29 29 H 1.08998 * 109.46949 * 90.03002 * 1 2 3 30 30 H 1.08991 * 109.47737 * 330.02336 * 1 2 3 31 31 H 1.09008 * 109.47158 * 210.02532 * 1 2 3 32 32 H 0.97005 * 119.99942 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.46612 * 299.99979 * 7 6 4 34 34 H 1.09006 * 109.46851 * 59.99658 * 7 6 4 35 35 H 1.08995 * 109.68330 * 307.50225 * 10 8 7 36 36 H 1.09001 * 109.68000 * 68.01874 * 10 8 7 37 37 H 0.97001 * 120.00508 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.67916 * 69.18392 * 20 11 10 39 39 H 1.08999 * 109.68551 * 189.70202 * 20 11 10 40 40 H 1.09001 * 109.51154 * 172.22437 * 21 20 11 41 41 H 1.08997 * 109.51467 * 292.37461 * 21 20 11 42 42 H 1.07998 * 126.83361 * 179.97438 * 23 3 2 43 43 H 1.08002 * 125.57263 * 179.97438 * 24 23 3 44 44 H 1.08998 * 109.47481 * 0.02562 * 26 25 2 45 45 H 1.08998 * 109.47109 * 59.99489 * 27 26 25 46 46 H 1.09000 * 109.46969 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.46573 * 299.99681 * 27 26 25 48 48 H 1.09010 * 109.46894 * 60.00107 * 28 26 25 49 49 H 1.09000 * 109.47459 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.47052 * 300.00455 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.6838 2.7838 -0.0006 6 7 2.7848 3.5055 -0.0010 7 6 2.3502 4.9045 -0.0009 8 6 3.5765 5.8195 -0.0009 9 1 4.2206 5.5648 0.8408 10 6 3.1259 7.2795 0.1225 11 7 4.3004 8.1453 -0.0677 12 6 4.5971 9.1377 0.8281 13 1 4.2730 9.0530 1.8547 14 6 5.3143 10.2526 0.4164 15 7 5.4236 10.5282 -0.8660 16 14 6.1246 11.3618 1.6824 17 1 7.5039 10.8815 1.9507 18 1 6.1767 12.7515 1.1617 19 1 5.3371 11.3339 2.9411 20 6 5.1470 7.9129 -1.2486 21 6 5.4991 6.4220 -1.3052 22 8 4.2985 5.6504 -1.2231 23 6 3.6882 0.6152 -0.0006 24 6 3.6096 -0.7273 -0.0004 25 7 2.2947 -1.0921 0.0058 26 6 1.8094 -2.4743 0.0141 27 6 2.3203 -3.2017 -1.2312 28 6 2.3217 -3.1873 1.2672 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 0.8901 0.5134 31 1 -0.3634 -0.8898 0.5143 32 1 3.7310 3.2915 -0.0006 33 1 1.7514 5.0989 -0.8907 34 1 1.7520 5.0991 0.8893 35 1 2.3801 7.4993 -0.6413 36 1 2.6999 7.4499 1.1113 37 1 5.9251 11.3071 -1.1538 38 1 4.6047 8.1965 -2.1506 39 1 6.0597 8.5035 -1.1680 40 1 6.0087 6.2037 -2.2437 41 1 6.1510 6.1698 -0.4689 42 1 4.5889 1.2111 -0.0012 43 1 4.4498 -1.4059 -0.0011 44 1 0.7194 -2.4767 0.0142 45 1 3.4103 -3.1993 -1.2318 46 1 1.9596 -4.2302 -1.2248 47 1 1.9554 -2.6938 -2.1239 48 1 1.9577 -2.6691 2.1545 49 1 1.9602 -4.2156 1.2736 50 1 3.4117 -3.1849 1.2666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035485647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:31 Heat of formation + Delta-G solvation = -17.247293 kcal Electronic energy + Delta-G solvation = -28980.692236 eV Core-core repulsion = 25009.323697 eV Total energy + Delta-G solvation = -3971.368538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65500 -39.17755 -38.23157 -35.60447 -34.75717 -34.18020 -31.81436 -31.50742 -30.77498 -29.84671 -27.86950 -27.53661 -26.54596 -25.28345 -23.21118 -22.88589 -22.32935 -21.48715 -20.01024 -19.28375 -18.81705 -17.48622 -16.90053 -16.29161 -15.92960 -15.61988 -15.49793 -15.02156 -14.84898 -14.49183 -14.26529 -14.04079 -13.83254 -13.68100 -13.45204 -13.19725 -13.15266 -12.98981 -12.95776 -12.74026 -12.67315 -12.51833 -12.47271 -12.17446 -11.74237 -11.66318 -11.55950 -11.45143 -11.09392 -10.83206 -10.68374 -10.35170 -10.22975 -9.95270 -9.70724 -9.55005 -9.01107 -8.86846 -8.64929 -8.52080 -8.21736 -6.72882 -5.82082 -3.25678 1.74535 2.32815 2.51885 3.35957 3.42603 3.44216 3.60661 3.72861 4.05713 4.32820 4.36471 4.43122 4.45583 4.55634 4.75277 4.93963 5.03199 5.06074 5.13124 5.14382 5.21682 5.30390 5.35888 5.42898 5.46940 5.54436 5.57341 5.58906 5.59404 5.80845 5.86893 5.88417 5.97112 6.08796 6.14449 6.24326 6.36630 6.42275 6.53887 6.67051 6.75858 6.81727 6.95917 7.10218 7.14430 7.54701 7.73178 7.87511 7.91964 8.35645 8.57943 9.13660 9.76402 10.33573 11.25940 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002023 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.425165 B =13836.354435 C =14066.783031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.103 3.897 3 C -0.233 4.233 4 C 0.589 3.411 5 O -0.559 6.559 6 N -0.716 5.716 7 C 0.133 3.867 8 C 0.066 3.934 9 H 0.058 0.942 10 C 0.122 3.878 11 N -0.594 5.594 12 C -0.254 4.254 13 H 0.069 0.931 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.139 3.861 21 C 0.040 3.960 22 O -0.388 6.388 23 C -0.165 4.165 24 C -0.016 4.016 25 N -0.437 5.437 26 C 0.120 3.880 27 C -0.162 4.162 28 C -0.163 4.163 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.028 0.972 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -29.099 1.295 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 C -0.242 4.242 4 C 0.378 3.622 5 O -0.439 6.439 6 N -0.366 5.366 7 C 0.009 3.991 8 C 0.006 3.994 9 H 0.076 0.924 10 C -0.006 4.006 11 N -0.318 5.318 12 C -0.383 4.383 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.547 5.547 16 Si 0.736 3.264 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.013 3.987 21 C -0.038 4.038 22 O -0.308 6.308 23 C -0.189 4.189 24 C -0.142 4.142 25 N -0.115 5.115 26 C 0.018 3.982 27 C -0.220 4.220 28 C -0.220 4.220 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.376 -29.174 1.086 29.685 hybrid contribution 1.286 0.748 0.685 1.638 sum -4.090 -28.426 1.771 28.774 Atomic orbital electron populations 1.20562 0.87331 1.03897 1.03285 1.20282 0.93649 0.85167 1.02234 1.20142 0.93183 0.91988 1.18922 1.17335 0.85277 0.84047 0.75561 1.90709 1.16708 1.84539 1.51979 1.45710 1.09923 1.05882 1.75124 1.21364 0.95973 0.79054 1.02714 1.22799 0.92431 0.96625 0.87575 0.92443 1.21448 0.90762 0.88452 0.99897 1.44070 1.24820 1.36104 1.26807 1.19217 1.32488 0.96543 0.90064 0.91310 1.25056 1.02135 0.96610 0.95963 1.70037 1.43489 1.27877 1.13325 0.86232 0.79653 0.79745 0.80799 1.21409 1.21705 1.20373 1.21448 0.97250 0.90674 0.89281 1.23311 0.85709 0.94684 1.00111 1.87801 1.37952 1.67214 1.37812 1.22026 0.95869 0.93510 1.07525 1.21502 0.85609 0.95941 1.11168 1.43818 1.05866 1.05414 1.56379 1.21506 1.00462 0.79325 0.96927 1.22168 1.02383 1.00644 0.96822 1.22174 1.02387 1.00745 0.96729 0.90623 0.87948 0.92246 0.76391 0.90821 0.90315 0.95216 0.91792 0.93524 0.95391 0.88804 0.90112 0.94168 0.83762 0.82057 0.88149 0.91590 0.90636 0.91628 0.91659 0.90634 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.35 36.00 0.34 -0.59 16 2 C 0.10 1.19 6.89 -81.88 -0.56 0.62 16 3 C -0.23 -3.12 6.29 -103.35 -0.65 -3.77 16 4 C 0.59 9.34 7.81 -12.59 -0.10 9.24 16 5 O -0.56 -10.23 14.81 5.26 0.08 -10.16 16 6 N -0.72 -10.77 5.50 -61.43 -0.34 -11.11 16 7 C 0.13 2.17 5.34 -4.04 -0.02 2.15 16 8 C 0.07 1.19 2.81 -26.58 -0.07 1.12 16 9 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 10 C 0.12 2.60 6.02 -3.54 -0.02 2.58 16 11 N -0.59 -15.07 3.05 -171.83 -0.52 -15.60 16 12 C -0.25 -6.96 9.65 -15.06 -0.15 -7.11 16 13 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 14 C 0.00 0.03 4.95 -17.43 -0.09 -0.06 16 15 N -0.90 -26.18 11.14 55.49 0.62 -25.56 16 16 Si 0.91 21.60 29.59 -169.99 -5.03 16.57 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.14 3.36 5.45 -3.53 -0.02 3.34 16 21 C 0.04 0.78 6.98 37.31 0.26 1.04 16 22 O -0.39 -7.54 10.33 -35.23 -0.36 -7.90 16 23 C -0.17 -1.82 10.56 -37.50 -0.40 -2.22 16 24 C -0.02 -0.15 10.17 -16.82 -0.17 -0.32 16 25 N -0.44 -3.90 2.57 -105.46 -0.27 -4.17 16 26 C 0.12 0.68 3.45 -67.93 -0.23 0.44 16 27 C -0.16 -0.73 9.22 37.16 0.34 -0.39 16 28 C -0.16 -0.72 9.23 37.16 0.34 -0.38 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.24 6.46 -51.93 -0.34 0.90 16 31 H 0.06 0.43 6.94 -51.92 -0.36 0.07 16 32 H 0.40 5.45 7.60 -40.82 -0.31 5.14 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.30 7.96 -51.93 -0.41 0.88 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.47 6.14 -51.93 -0.32 2.15 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.14 1.39 7.69 -52.49 -0.40 0.98 16 43 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.10 0.49 6.46 -51.93 -0.34 0.16 16 45 H 0.07 0.30 7.88 -51.93 -0.41 -0.11 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 49 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 50 H 0.07 0.29 7.89 -51.93 -0.41 -0.12 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -33.22 399.46 -9.35 -42.57 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.34 Total: 3.65 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.20 Total: 5.69 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.51 Total: -56.44 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.29 Total: -18.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.22 -9.35 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035485647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.320 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds