Wall clock time and date at job start Tue Mar 31 2020 18:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36771 * 125.80210 * 2 1 4 4 C 1.47267 * 126.93680 * 359.97438 * 3 2 1 5 5 O 1.21620 * 120.00082 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00124 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47094 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.50992 * 304.99782 * 8 7 6 10 10 C 1.53295 * 109.50878 * 184.89616 * 8 7 6 11 11 N 1.47148 * 108.38413 * 187.77257 * 10 8 7 12 12 C 1.36936 * 120.98386 * 230.56169 * 11 10 8 13 13 H 1.07991 * 120.00244 * 26.23812 * 12 11 10 14 14 C 1.38818 * 119.99918 * 206.24303 * 12 11 10 15 15 N 1.31618 * 120.00106 * 16.90186 * 14 12 11 16 16 Si 1.86802 * 120.00078 * 196.90635 * 14 12 11 17 17 H 1.48501 * 109.47032 * 89.99451 * 16 14 12 18 18 H 1.48500 * 109.46914 * 209.99856 * 16 14 12 19 19 H 1.48507 * 109.46916 * 329.99824 * 16 14 12 20 20 C 1.47154 * 118.03566 * 50.53754 * 11 10 8 21 21 C 1.53296 * 108.38273 * 309.46676 * 20 11 10 22 22 O 1.42955 * 109.26831 * 52.27518 * 21 20 11 23 23 C 1.46685 * 106.11982 * 180.02562 * 3 2 1 24 24 C 1.34484 * 106.32960 * 359.97438 * 23 3 2 25 25 N 1.34660 * 125.80357 * 179.69337 * 2 1 3 26 26 C 1.46495 * 124.84903 * 359.96016 * 25 2 1 27 27 C 1.53001 * 109.47251 * 120.00449 * 26 25 2 28 28 C 1.53007 * 109.47216 * 239.99974 * 26 25 2 29 29 H 1.08998 * 109.46949 * 90.03002 * 1 2 3 30 30 H 1.08991 * 109.47737 * 330.02336 * 1 2 3 31 31 H 1.09008 * 109.47158 * 210.02532 * 1 2 3 32 32 H 0.97005 * 119.99942 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.46612 * 299.99979 * 7 6 4 34 34 H 1.09006 * 109.46851 * 59.99658 * 7 6 4 35 35 H 1.08995 * 109.68330 * 307.50225 * 10 8 7 36 36 H 1.09001 * 109.68000 * 68.01874 * 10 8 7 37 37 H 0.97001 * 120.00508 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.67916 * 69.18392 * 20 11 10 39 39 H 1.08999 * 109.68551 * 189.70202 * 20 11 10 40 40 H 1.09001 * 109.51154 * 172.22437 * 21 20 11 41 41 H 1.08997 * 109.51467 * 292.37461 * 21 20 11 42 42 H 1.07998 * 126.83361 * 179.97438 * 23 3 2 43 43 H 1.08002 * 125.57263 * 179.97438 * 24 23 3 44 44 H 1.08998 * 109.47481 * 0.02562 * 26 25 2 45 45 H 1.08998 * 109.47109 * 59.99489 * 27 26 25 46 46 H 1.09000 * 109.46969 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.46573 * 299.99681 * 27 26 25 48 48 H 1.09010 * 109.46894 * 60.00107 * 28 26 25 49 49 H 1.09000 * 109.47459 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.47052 * 300.00455 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.6838 2.7838 -0.0006 6 7 2.7848 3.5055 -0.0010 7 6 2.3502 4.9045 -0.0009 8 6 3.5765 5.8195 -0.0009 9 1 4.2206 5.5648 0.8408 10 6 3.1259 7.2795 0.1225 11 7 4.3004 8.1453 -0.0677 12 6 4.5971 9.1377 0.8281 13 1 4.2730 9.0530 1.8547 14 6 5.3143 10.2526 0.4164 15 7 5.4236 10.5282 -0.8660 16 14 6.1246 11.3618 1.6824 17 1 7.5039 10.8815 1.9507 18 1 6.1767 12.7515 1.1617 19 1 5.3371 11.3339 2.9411 20 6 5.1470 7.9129 -1.2486 21 6 5.4991 6.4220 -1.3052 22 8 4.2985 5.6504 -1.2231 23 6 3.6882 0.6152 -0.0006 24 6 3.6096 -0.7273 -0.0004 25 7 2.2947 -1.0921 0.0058 26 6 1.8094 -2.4743 0.0141 27 6 2.3203 -3.2017 -1.2312 28 6 2.3217 -3.1873 1.2672 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 0.8901 0.5134 31 1 -0.3634 -0.8898 0.5143 32 1 3.7310 3.2915 -0.0006 33 1 1.7514 5.0989 -0.8907 34 1 1.7520 5.0991 0.8893 35 1 2.3801 7.4993 -0.6413 36 1 2.6999 7.4499 1.1113 37 1 5.9251 11.3071 -1.1538 38 1 4.6047 8.1965 -2.1506 39 1 6.0597 8.5035 -1.1680 40 1 6.0087 6.2037 -2.2437 41 1 6.1510 6.1698 -0.4689 42 1 4.5889 1.2111 -0.0012 43 1 4.4498 -1.4059 -0.0011 44 1 0.7194 -2.4767 0.0142 45 1 3.4103 -3.1993 -1.2318 46 1 1.9596 -4.2302 -1.2248 47 1 1.9554 -2.6938 -2.1239 48 1 1.9577 -2.6691 2.1545 49 1 1.9602 -4.2156 1.2736 50 1 3.4117 -3.1849 1.2666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035485647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:29 Heat of formation + Delta-G solvation = -38.175901 kcal Electronic energy + Delta-G solvation = -28981.599768 eV Core-core repulsion = 25009.323697 eV Total energy + Delta-G solvation = -3972.276071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.41516 -40.54487 -39.71905 -36.48855 -36.12759 -35.70111 -33.37604 -32.60884 -32.35026 -30.75120 -29.20466 -28.18379 -27.68607 -26.70685 -24.99389 -23.98159 -23.14382 -22.82843 -21.59357 -20.51966 -19.55111 -18.86815 -18.25904 -17.53405 -17.18888 -16.96491 -16.76705 -16.33002 -16.10603 -15.63455 -15.48567 -15.47780 -15.14215 -14.96948 -14.57711 -14.46759 -14.29089 -14.06626 -13.97552 -13.62453 -13.54395 -13.36883 -13.20934 -13.03382 -12.99324 -12.93411 -12.68719 -12.52712 -12.40762 -12.19289 -12.15838 -12.07063 -11.95122 -11.86795 -11.33265 -10.87907 -10.78272 -10.53807 -10.08261 -9.48664 -9.05682 -8.76001 -7.91095 -5.38830 0.78780 1.47320 1.48031 1.55397 1.57561 1.83372 2.39431 2.52201 2.62286 2.80487 3.23472 3.49768 3.64968 3.80795 3.97598 3.98684 4.02853 4.07639 4.10145 4.19932 4.27679 4.38792 4.49066 4.53868 4.56801 4.63399 4.67582 4.70251 4.72152 4.79140 4.82657 4.83602 4.87791 4.90023 5.00408 5.06182 5.08062 5.24397 5.24949 5.25335 5.30414 5.51626 5.55381 5.60957 5.84331 6.16794 6.26082 6.33540 6.41660 6.72026 7.05834 7.38909 7.73683 8.27865 9.14963 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002023 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.425165 B =13836.354435 C =14066.783031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 C -0.269 4.269 4 C 0.584 3.416 5 O -0.593 6.593 6 N -0.711 5.711 7 C 0.144 3.856 8 C 0.081 3.919 9 H 0.068 0.932 10 C 0.117 3.883 11 N -0.613 5.613 12 C -0.266 4.266 13 H 0.073 0.927 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.974 3.026 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.268 1.268 20 C 0.143 3.857 21 C 0.054 3.946 22 O -0.390 6.390 23 C -0.183 4.183 24 C -0.004 4.004 25 N -0.430 5.430 26 C 0.112 3.888 27 C -0.158 4.158 28 C -0.158 4.158 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.410 0.590 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.017 0.983 36 H 0.072 0.928 37 H 0.252 0.748 38 H -0.002 1.002 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.154 0.846 43 H 0.194 0.806 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.097 0.903 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -32.223 2.303 32.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.279 4.279 4 C 0.375 3.625 5 O -0.476 6.476 6 N -0.362 5.362 7 C 0.019 3.981 8 C 0.022 3.978 9 H 0.086 0.914 10 C -0.009 4.009 11 N -0.337 5.337 12 C -0.396 4.396 13 H 0.091 0.909 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.801 3.199 17 H -0.208 1.208 18 H -0.222 1.222 19 H -0.193 1.193 20 C 0.017 3.983 21 C -0.024 4.024 22 O -0.309 6.309 23 C -0.207 4.207 24 C -0.131 4.131 25 N -0.106 5.106 26 C 0.012 3.988 27 C -0.216 4.216 28 C -0.216 4.216 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.171 0.829 43 H 0.211 0.789 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.544 -32.351 2.104 32.737 hybrid contribution 0.961 1.635 0.352 1.929 sum -3.583 -30.716 2.456 31.022 Atomic orbital electron populations 1.20515 0.86726 1.04043 1.03453 1.20472 0.94326 0.85682 1.01656 1.20143 0.95019 0.91008 1.21758 1.17772 0.84817 0.85170 0.74738 1.90682 1.18028 1.85193 1.53683 1.45601 1.10374 1.05114 1.75066 1.21135 0.94837 0.79693 1.02388 1.22625 0.92971 0.94715 0.87528 0.91410 1.21593 0.89520 0.89862 0.99949 1.44347 1.26251 1.36407 1.26695 1.19565 1.32261 0.97067 0.90673 0.90945 1.25863 1.02923 0.98193 0.97748 1.70197 1.44405 1.28413 1.15178 0.85174 0.78716 0.77321 0.78661 1.20817 1.22237 1.19282 1.21322 0.95578 0.93557 0.87817 1.23164 0.85935 0.91204 1.02089 1.87816 1.37988 1.66674 1.38448 1.22213 0.95163 0.94611 1.08682 1.21982 0.86407 0.95774 1.08905 1.44098 1.05644 1.06161 1.54703 1.21841 1.01137 0.77611 0.98245 1.22155 1.02540 1.01490 0.95413 1.22159 1.02546 1.01582 0.95298 0.90397 0.90488 0.89359 0.75428 0.92281 0.89637 0.96469 0.90920 0.93919 0.98351 0.91298 0.87351 0.93060 0.82866 0.78895 0.87376 0.91306 0.88455 0.92964 0.92860 0.88468 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.35 71.23 0.67 -1.08 16 2 C 0.10 2.15 6.89 41.78 0.29 2.44 16 3 C -0.27 -7.14 6.29 -19.04 -0.12 -7.26 16 4 C 0.58 18.75 7.81 86.62 0.68 19.43 16 5 O -0.59 -22.37 14.81 -4.09 -0.06 -22.43 16 6 N -0.71 -21.21 5.50 -466.52 -2.57 -23.78 16 7 C 0.14 4.69 5.34 86.38 0.46 5.15 16 8 C 0.08 2.90 2.81 30.69 0.09 2.99 16 9 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 10 C 0.12 5.05 6.02 86.35 0.52 5.57 16 11 N -0.61 -31.48 3.05 -697.54 -2.13 -33.61 16 12 C -0.27 -14.69 9.65 84.04 0.81 -13.88 16 13 H 0.07 3.86 7.88 -2.92 -0.02 3.84 16 14 C -0.05 -2.90 4.95 84.86 0.42 -2.48 16 15 N -0.94 -55.61 11.14 21.65 0.24 -55.37 16 16 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.14 7.04 5.45 86.35 0.47 7.51 16 21 C 0.05 2.05 6.98 72.08 0.50 2.56 16 22 O -0.39 -14.76 10.33 -148.98 -1.54 -16.30 16 23 C -0.18 -3.78 10.56 23.62 0.25 -3.54 16 24 C 0.00 -0.07 10.17 83.12 0.85 0.78 16 25 N -0.43 -6.74 2.57 -487.57 -1.25 -7.99 16 26 C 0.11 0.94 3.45 45.00 0.16 1.10 16 27 C -0.16 -0.94 9.22 71.98 0.66 -0.28 16 28 C -0.16 -0.89 9.23 71.98 0.66 -0.23 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.92 6.46 -2.39 -0.02 1.91 16 31 H 0.09 1.12 6.94 -2.38 -0.02 1.10 16 32 H 0.41 10.76 7.60 -92.70 -0.70 10.06 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 2.95 7.96 -2.39 -0.02 2.93 16 37 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 39 H 0.07 3.73 6.14 -2.39 -0.01 3.71 16 40 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.15 2.72 7.69 -2.91 -0.02 2.69 16 43 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.11 0.75 6.46 -2.39 -0.02 0.73 16 45 H 0.07 0.39 7.88 -2.39 -0.02 0.37 16 46 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.07 0.37 7.89 -2.39 -0.02 0.35 16 Total: -1.00 -73.50 399.46 2.31 -71.19 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.23 Total: 22.79 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 7.36 Total: 18.77 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.70 Total: -120.73 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.60 Total: -38.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.50 2.31 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035485647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.013 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds