Wall clock time and date at job start Tue Mar 31 2020 19:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.74021 * 2 1 4 4 O 1.21285 * 120.00334 * 117.74652 * 3 2 1 5 5 N 1.34777 * 119.99880 * 297.75241 * 3 2 1 6 6 C 1.46882 * 120.46717 * 5.04273 * 5 3 2 7 7 C 1.52859 * 109.02029 * 235.49101 * 6 5 3 8 8 C 1.52670 * 109.17210 * 307.81637 * 7 6 5 9 9 C 1.53487 * 113.62489 * 188.98814 * 8 7 6 10 10 N 1.47663 * 85.99060 * 137.70657 * 9 8 7 11 11 C 1.36938 * 134.45634 * 155.69960 * 10 9 8 12 12 H 1.08001 * 120.00151 * 179.97438 * 11 10 9 13 13 C 1.38807 * 119.99927 * 359.97438 * 11 10 9 14 14 N 1.31616 * 120.00296 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47079 * 89.99654 * 15 13 11 17 17 H 1.48499 * 109.47654 * 209.99777 * 15 13 11 18 18 H 1.48498 * 109.47158 * 330.00291 * 15 13 11 19 19 C 1.47665 * 91.08782 * 335.68417 * 10 9 8 20 20 C 1.52673 * 113.18573 * 57.45940 * 8 7 6 21 21 C 1.46880 * 120.46581 * 185.31703 * 5 3 2 22 22 C 1.53348 * 109.60351 * 239.59234 * 2 1 3 23 23 C 1.53077 * 108.42751 * 172.71498 * 22 2 1 24 24 C 1.50177 * 109.88826 * 48.90022 * 23 22 2 25 25 O 1.21284 * 118.24087 * 162.44469 * 24 23 22 26 26 N 1.33353 * 123.50839 * 342.41552 * 24 23 22 27 27 C 1.45749 * 124.11141 * 2.25197 * 26 24 23 28 28 H 1.08996 * 109.46876 * 165.35264 * 1 2 3 29 29 H 1.09001 * 109.46731 * 285.35238 * 1 2 3 30 30 H 1.09003 * 109.46594 * 45.35187 * 1 2 3 31 31 H 1.09002 * 109.58742 * 355.31371 * 6 5 3 32 32 H 1.09000 * 109.59646 * 115.74823 * 6 5 3 33 33 H 1.08998 * 109.61391 * 187.84074 * 7 6 5 34 34 H 1.09001 * 109.44606 * 67.69040 * 7 6 5 35 35 H 1.09000 * 113.79473 * 251.97949 * 9 8 7 36 36 H 1.09008 * 113.78382 * 23.44049 * 9 8 7 37 37 H 0.97000 * 120.00305 * 179.97438 * 14 13 11 38 38 H 1.08998 * 113.79012 * 270.04776 * 19 10 9 39 39 H 1.09001 * 113.79231 * 138.57368 * 19 10 9 40 40 H 1.09007 * 109.52918 * 182.52182 * 20 8 7 41 41 H 1.08998 * 109.52970 * 62.30175 * 20 8 7 42 42 H 1.08996 * 109.59124 * 244.25428 * 21 5 3 43 43 H 1.08997 * 109.59347 * 4.69172 * 21 5 3 44 44 H 1.08999 * 109.67375 * 52.98215 * 22 2 1 45 45 H 1.09000 * 109.67742 * 292.44600 * 22 2 1 46 46 H 1.08994 * 109.39937 * 169.03201 * 23 22 2 47 47 H 1.09005 * 109.39708 * 288.85844 * 23 22 2 48 48 H 0.97001 * 117.94181 * 182.22350 * 26 24 23 49 49 H 1.09002 * 109.30117 * 101.20586 * 27 26 24 50 50 H 1.09003 * 109.30093 * 220.79919 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4184 0.0000 4 8 2.7041 1.8241 0.9296 5 7 1.7550 2.2363 -1.0330 6 6 0.8601 1.7926 -2.1099 7 6 1.5845 1.9324 -3.4487 8 6 2.1367 3.3501 -3.5744 9 6 2.6939 3.6719 -4.9679 10 7 2.0201 4.9777 -4.8221 11 6 2.2102 6.2209 -5.3640 12 1 1.5596 7.0367 -5.0854 13 6 3.2392 6.4325 -6.2713 14 7 4.0324 5.4385 -6.6104 15 14 3.4982 8.1281 -7.0110 16 1 4.4283 8.9056 -6.1533 17 1 4.0769 7.9916 -8.3717 18 1 2.1952 8.8354 -7.0959 19 6 1.0588 4.4058 -3.8581 20 6 3.0797 3.7310 -2.4358 21 6 2.3408 3.5815 -1.1006 22 6 2.0445 -0.7312 -1.2459 23 6 3.5639 -0.5584 -1.3154 24 6 4.1768 -0.8868 0.0157 25 8 5.3668 -1.1173 0.0584 26 7 3.4828 -0.9379 1.1533 27 6 2.0430 -0.7297 1.2424 28 1 -0.3633 -0.9942 -0.2599 29 1 -0.3633 0.2721 0.9910 30 1 -0.3632 0.7222 -0.7312 31 1 0.5867 0.7494 -1.9514 32 1 -0.0376 2.4108 -2.1172 33 1 0.8871 1.7393 -4.2639 34 1 2.4051 1.2163 -3.4938 35 1 3.7813 3.7395 -5.0019 36 1 2.2798 3.0497 -5.7614 37 1 4.7513 5.5863 -7.2447 38 1 0.1589 4.0017 -4.3217 39 1 0.8468 5.0566 -3.0098 40 1 3.4021 4.7649 -2.5601 41 1 3.9488 3.0733 -2.4470 42 1 1.5496 4.3283 -1.0352 43 1 3.0425 3.7164 -0.2775 44 1 1.5855 -0.3043 -2.1376 45 1 1.7985 -1.7908 -1.1773 46 1 3.9697 -1.2259 -2.0755 47 1 3.7994 0.4733 -1.5765 48 1 3.9665 -1.1259 1.9728 49 1 1.5438 -1.6951 1.3253 50 1 1.8195 -0.1313 2.1256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035773852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:13 Heat of formation + Delta-G solvation = -1.107682 kcal Electronic energy + Delta-G solvation = -31566.546685 eV Core-core repulsion = 27595.878012 eV Total energy + Delta-G solvation = -3970.668672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66848 -39.77342 -38.73812 -36.66163 -36.01890 -33.79703 -32.45360 -31.71001 -30.98056 -30.34187 -27.00901 -26.65106 -25.14168 -24.69825 -24.29578 -23.32210 -22.37738 -21.34398 -20.40452 -18.81987 -17.44057 -17.33498 -16.74028 -16.66889 -16.07730 -16.01761 -15.81730 -14.97010 -14.90247 -14.76210 -14.48622 -14.14375 -13.93782 -13.78324 -13.60884 -13.46027 -13.18962 -12.79746 -12.68353 -12.58601 -12.41002 -12.22068 -12.12237 -11.76644 -11.57237 -11.30426 -11.13888 -11.11491 -10.98001 -10.88654 -10.84642 -10.37371 -10.19510 -9.85421 -9.80221 -9.72128 -9.45326 -9.36703 -9.18771 -8.79538 -8.49017 -6.86745 -5.76664 -3.08564 2.52227 2.60095 2.93217 3.17600 3.38631 3.43591 3.45452 3.99430 4.10466 4.29957 4.39825 4.45175 4.61080 4.78537 4.93533 4.96789 5.02812 5.12789 5.15332 5.18824 5.20076 5.26456 5.31366 5.39299 5.41211 5.48176 5.54200 5.57627 5.65217 5.71013 5.73351 5.83800 5.88004 5.91663 6.12917 6.23044 6.26283 6.38923 6.57743 6.61052 6.64639 6.77041 6.83768 7.20814 7.22394 7.35896 7.40650 7.58151 7.98934 8.10950 8.13375 9.05074 9.71418 10.60945 11.40165 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.003132 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.707697 B = 8938.439099 C = 9343.133389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C 0.522 3.478 4 O -0.538 6.538 5 N -0.599 5.599 6 C 0.086 3.914 7 C -0.123 4.123 8 C -0.107 4.107 9 C 0.173 3.827 10 N -0.609 5.609 11 C -0.223 4.223 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.920 5.920 15 Si 0.909 3.091 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.127 3.873 20 C -0.096 4.096 21 C 0.113 3.887 22 C -0.125 4.125 23 C -0.141 4.141 24 C 0.524 3.476 25 O -0.560 6.560 26 N -0.710 5.710 27 C 0.137 3.863 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.400 0.600 49 H 0.073 0.927 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 -15.708 13.564 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 C 0.309 3.691 4 O -0.415 6.415 5 N -0.332 5.332 6 C -0.036 4.036 7 C -0.161 4.161 8 C -0.109 4.109 9 C 0.048 3.952 10 N -0.334 5.334 11 C -0.351 4.351 12 H 0.095 0.905 13 C -0.203 4.203 14 N -0.567 5.567 15 Si 0.739 3.261 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.208 1.208 19 C 0.001 3.999 20 C -0.134 4.134 21 C -0.009 4.009 22 C -0.163 4.163 23 C -0.181 4.181 24 C 0.311 3.689 25 O -0.439 6.439 26 N -0.361 5.361 27 C 0.011 3.989 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.235 0.765 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.488 -15.282 13.648 22.580 hybrid contribution 0.130 1.003 -0.413 1.092 sum -9.357 -14.279 13.235 21.602 Atomic orbital electron populations 1.22143 0.91106 1.03969 1.04033 1.21164 0.98228 0.93378 0.97472 1.20235 0.80069 0.86674 0.82126 1.90708 1.39661 1.76258 1.34862 1.48023 1.47343 1.15634 1.22166 1.22332 0.92964 1.01043 0.87251 1.21819 1.00216 0.98219 0.95896 1.22374 0.97811 0.92561 0.98108 1.22236 0.98918 0.84930 0.89152 1.45936 1.32376 1.05076 1.50049 1.18994 1.11565 0.84848 1.19668 0.90455 1.24746 0.98318 0.97539 0.99699 1.69807 1.20130 1.29885 1.36907 0.86172 0.77797 0.83590 0.78500 1.21558 1.21689 1.20779 1.22582 0.92397 0.92472 0.92488 1.21492 0.97001 1.03219 0.91731 1.21714 0.97993 0.81997 0.99157 1.22154 0.95160 1.01424 0.97516 1.21710 0.95714 1.05429 0.95260 1.20073 0.86779 0.75791 0.86272 1.90756 1.15788 1.50210 1.87172 1.45239 1.08881 1.72079 1.09949 1.21213 0.80599 0.99424 0.97621 0.90720 0.91356 0.89924 0.88164 0.91017 0.90521 0.91650 0.90996 0.95775 0.93686 0.95220 0.94238 0.89428 0.92217 0.91391 0.89515 0.88284 0.89810 0.87525 0.87877 0.76493 0.90867 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.08 37.16 0.30 -0.51 16 2 C -0.10 -0.79 0.50 -155.51 -0.08 -0.86 16 3 C 0.52 6.23 4.72 -10.99 -0.05 6.18 16 4 O -0.54 -8.43 14.93 5.55 0.08 -8.34 16 5 N -0.60 -7.01 2.94 -172.96 -0.51 -7.52 16 6 C 0.09 0.82 3.94 -3.91 -0.02 0.80 16 7 C -0.12 -1.46 4.92 -26.97 -0.13 -1.60 16 8 C -0.11 -1.76 0.77 -154.42 -0.12 -1.88 16 9 C 0.17 3.82 6.64 -3.16 -0.02 3.80 16 10 N -0.61 -14.82 3.53 -179.75 -0.64 -15.46 16 11 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 12 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 13 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 14 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16 15 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.13 2.36 7.73 -3.15 -0.02 2.34 16 20 C -0.10 -1.57 5.21 -26.72 -0.14 -1.71 16 21 C 0.11 1.58 6.29 -3.66 -0.02 1.56 16 22 C -0.13 -0.92 4.54 -26.51 -0.12 -1.04 16 23 C -0.14 -1.52 5.50 -28.10 -0.15 -1.67 16 24 C 0.52 6.98 7.44 -11.87 -0.09 6.89 16 25 O -0.56 -9.90 17.78 5.55 0.10 -9.80 16 26 N -0.71 -7.44 5.03 -61.38 -0.31 -7.75 16 27 C 0.14 1.05 5.37 -4.48 -0.02 1.02 16 28 H 0.07 0.24 8.06 -51.93 -0.42 -0.18 16 29 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.08 0.45 4.89 -51.93 -0.25 0.20 16 31 H 0.10 0.68 2.56 -51.93 -0.13 0.55 16 32 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.06 0.76 7.71 -51.93 -0.40 0.36 16 35 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 36 H 0.02 0.55 8.09 -51.92 -0.42 0.13 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.03 0.53 8.07 -51.93 -0.42 0.12 16 39 H 0.04 0.72 7.41 -51.93 -0.38 0.33 16 40 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 43 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 44 H 0.10 0.64 4.28 -51.93 -0.22 0.42 16 45 H 0.08 0.46 8.13 -51.93 -0.42 0.03 16 46 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.31 7.43 -51.93 -0.39 0.92 16 48 H 0.40 3.92 8.80 -40.82 -0.36 3.56 16 49 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 50 H 0.08 0.68 7.76 -51.93 -0.40 0.27 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -35.30 371.96 -8.84 -44.14 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.83 Total: 1.66 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.95 Total: 6.76 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.82 Total: -57.00 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.18 Total: -18.15 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.30 -8.84 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035773852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.032 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds