Wall clock time and date at job start Tue Mar 31 2020 19:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.74021 * 2 1 4 4 O 1.21285 * 120.00334 * 117.74652 * 3 2 1 5 5 N 1.34777 * 119.99880 * 297.75241 * 3 2 1 6 6 C 1.46882 * 120.46717 * 5.04273 * 5 3 2 7 7 C 1.52859 * 109.02029 * 235.49101 * 6 5 3 8 8 C 1.52670 * 109.17210 * 307.81637 * 7 6 5 9 9 C 1.53487 * 113.62489 * 188.98814 * 8 7 6 10 10 N 1.47663 * 85.99060 * 137.70657 * 9 8 7 11 11 C 1.36938 * 134.45634 * 155.69960 * 10 9 8 12 12 H 1.08001 * 120.00151 * 179.97438 * 11 10 9 13 13 C 1.38807 * 119.99927 * 359.97438 * 11 10 9 14 14 N 1.31616 * 120.00296 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47079 * 89.99654 * 15 13 11 17 17 H 1.48499 * 109.47654 * 209.99777 * 15 13 11 18 18 H 1.48498 * 109.47158 * 330.00291 * 15 13 11 19 19 C 1.47665 * 91.08782 * 335.68417 * 10 9 8 20 20 C 1.52673 * 113.18573 * 57.45940 * 8 7 6 21 21 C 1.46880 * 120.46581 * 185.31703 * 5 3 2 22 22 C 1.53348 * 109.60351 * 239.59234 * 2 1 3 23 23 C 1.53077 * 108.42751 * 172.71498 * 22 2 1 24 24 C 1.50177 * 109.88826 * 48.90022 * 23 22 2 25 25 O 1.21284 * 118.24087 * 162.44469 * 24 23 22 26 26 N 1.33353 * 123.50839 * 342.41552 * 24 23 22 27 27 C 1.45749 * 124.11141 * 2.25197 * 26 24 23 28 28 H 1.08996 * 109.46876 * 165.35264 * 1 2 3 29 29 H 1.09001 * 109.46731 * 285.35238 * 1 2 3 30 30 H 1.09003 * 109.46594 * 45.35187 * 1 2 3 31 31 H 1.09002 * 109.58742 * 355.31371 * 6 5 3 32 32 H 1.09000 * 109.59646 * 115.74823 * 6 5 3 33 33 H 1.08998 * 109.61391 * 187.84074 * 7 6 5 34 34 H 1.09001 * 109.44606 * 67.69040 * 7 6 5 35 35 H 1.09000 * 113.79473 * 251.97949 * 9 8 7 36 36 H 1.09008 * 113.78382 * 23.44049 * 9 8 7 37 37 H 0.97000 * 120.00305 * 179.97438 * 14 13 11 38 38 H 1.08998 * 113.79012 * 270.04776 * 19 10 9 39 39 H 1.09001 * 113.79231 * 138.57368 * 19 10 9 40 40 H 1.09007 * 109.52918 * 182.52182 * 20 8 7 41 41 H 1.08998 * 109.52970 * 62.30175 * 20 8 7 42 42 H 1.08996 * 109.59124 * 244.25428 * 21 5 3 43 43 H 1.08997 * 109.59347 * 4.69172 * 21 5 3 44 44 H 1.08999 * 109.67375 * 52.98215 * 22 2 1 45 45 H 1.09000 * 109.67742 * 292.44600 * 22 2 1 46 46 H 1.08994 * 109.39937 * 169.03201 * 23 22 2 47 47 H 1.09005 * 109.39708 * 288.85844 * 23 22 2 48 48 H 0.97001 * 117.94181 * 182.22350 * 26 24 23 49 49 H 1.09002 * 109.30117 * 101.20586 * 27 26 24 50 50 H 1.09003 * 109.30093 * 220.79919 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4184 0.0000 4 8 2.7041 1.8241 0.9296 5 7 1.7550 2.2363 -1.0330 6 6 0.8601 1.7926 -2.1099 7 6 1.5845 1.9324 -3.4487 8 6 2.1367 3.3501 -3.5744 9 6 2.6939 3.6719 -4.9679 10 7 2.0201 4.9777 -4.8221 11 6 2.2102 6.2209 -5.3640 12 1 1.5596 7.0367 -5.0854 13 6 3.2392 6.4325 -6.2713 14 7 4.0324 5.4385 -6.6104 15 14 3.4982 8.1281 -7.0110 16 1 4.4283 8.9056 -6.1533 17 1 4.0769 7.9916 -8.3717 18 1 2.1952 8.8354 -7.0959 19 6 1.0588 4.4058 -3.8581 20 6 3.0797 3.7310 -2.4358 21 6 2.3408 3.5815 -1.1006 22 6 2.0445 -0.7312 -1.2459 23 6 3.5639 -0.5584 -1.3154 24 6 4.1768 -0.8868 0.0157 25 8 5.3668 -1.1173 0.0584 26 7 3.4828 -0.9379 1.1533 27 6 2.0430 -0.7297 1.2424 28 1 -0.3633 -0.9942 -0.2599 29 1 -0.3633 0.2721 0.9910 30 1 -0.3632 0.7222 -0.7312 31 1 0.5867 0.7494 -1.9514 32 1 -0.0376 2.4108 -2.1172 33 1 0.8871 1.7393 -4.2639 34 1 2.4051 1.2163 -3.4938 35 1 3.7813 3.7395 -5.0019 36 1 2.2798 3.0497 -5.7614 37 1 4.7513 5.5863 -7.2447 38 1 0.1589 4.0017 -4.3217 39 1 0.8468 5.0566 -3.0098 40 1 3.4021 4.7649 -2.5601 41 1 3.9488 3.0733 -2.4470 42 1 1.5496 4.3283 -1.0352 43 1 3.0425 3.7164 -0.2775 44 1 1.5855 -0.3043 -2.1376 45 1 1.7985 -1.7908 -1.1773 46 1 3.9697 -1.2259 -2.0755 47 1 3.7994 0.4733 -1.5765 48 1 3.9665 -1.1259 1.9728 49 1 1.5438 -1.6951 1.3253 50 1 1.8195 -0.1313 2.1256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035773852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:12 Heat of formation + Delta-G solvation = -27.014793 kcal Electronic energy + Delta-G solvation = -31567.670101 eV Core-core repulsion = 27595.878012 eV Total energy + Delta-G solvation = -3971.792089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.53898 -40.98553 -39.97230 -37.57021 -37.22469 -34.80723 -34.20009 -32.50083 -32.09105 -31.73924 -28.70461 -27.26874 -26.74184 -25.61717 -25.37845 -24.41347 -23.56992 -22.60744 -21.51369 -19.81570 -18.68578 -18.58736 -18.24571 -17.60581 -17.05923 -16.93004 -16.75341 -16.72824 -16.10238 -15.91632 -15.63412 -15.46432 -15.07376 -14.78006 -14.76798 -14.43201 -14.08668 -14.03673 -13.66299 -13.60603 -13.38138 -13.32329 -13.11266 -12.90970 -12.87651 -12.81392 -12.60520 -12.34344 -12.21196 -12.10060 -11.96326 -11.73859 -11.63104 -11.52658 -11.12003 -10.99367 -10.81865 -10.79846 -10.44680 -10.03901 -9.55648 -8.85028 -7.88179 -5.19468 1.43768 1.45189 1.53365 1.59851 1.63238 2.02092 2.37284 2.48255 3.30044 3.33462 3.44495 3.47251 3.59225 3.65242 3.71940 3.88162 3.96901 4.03617 4.19044 4.27350 4.36758 4.40009 4.45759 4.56617 4.64602 4.70938 4.72486 4.74525 4.76318 4.78617 4.86107 4.91830 4.95323 5.02255 5.06386 5.08985 5.12334 5.16117 5.25067 5.32001 5.39890 5.41960 5.55950 5.62674 5.79510 5.81739 5.99433 6.33725 6.49431 6.95701 7.18636 7.19075 7.65157 8.62170 9.28393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.003132 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.707697 B = 8938.439099 C = 9343.133389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C 0.516 3.484 4 O -0.583 6.583 5 N -0.599 5.599 6 C 0.089 3.911 7 C -0.118 4.118 8 C -0.079 4.079 9 C 0.167 3.833 10 N -0.641 5.641 11 C -0.229 4.229 12 H 0.080 0.920 13 C -0.068 4.068 14 N -0.953 5.953 15 Si 0.971 3.029 16 H -0.290 1.290 17 H -0.296 1.296 18 H -0.268 1.268 19 C 0.131 3.869 20 C -0.089 4.089 21 C 0.125 3.875 22 C -0.118 4.118 23 C -0.141 4.141 24 C 0.514 3.486 25 O -0.619 6.619 26 N -0.704 5.704 27 C 0.129 3.871 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.020 0.980 37 H 0.245 0.755 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.400 0.600 49 H 0.116 0.884 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 -17.809 14.408 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 C 0.305 3.695 4 O -0.463 6.463 5 N -0.330 5.330 6 C -0.032 4.032 7 C -0.157 4.157 8 C -0.080 4.080 9 C 0.041 3.959 10 N -0.367 5.367 11 C -0.357 4.357 12 H 0.098 0.902 13 C -0.260 4.260 14 N -0.603 5.603 15 Si 0.800 3.200 16 H -0.217 1.217 17 H -0.223 1.223 18 H -0.193 1.193 19 C 0.006 3.994 20 C -0.127 4.127 21 C 0.002 3.998 22 C -0.155 4.155 23 C -0.181 4.181 24 C 0.302 3.698 25 O -0.503 6.503 26 N -0.352 5.352 27 C 0.006 3.994 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.132 0.868 47 H 0.096 0.904 48 H 0.235 0.765 49 H 0.134 0.866 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.565 -17.394 14.525 26.411 hybrid contribution 1.371 1.680 -0.590 2.248 sum -12.194 -15.714 13.936 24.286 Atomic orbital electron populations 1.22199 0.87987 1.06163 1.04600 1.21256 1.00444 0.90006 0.97957 1.21107 0.79056 0.88186 0.81162 1.90694 1.41549 1.77394 1.36616 1.48069 1.47408 1.14568 1.22997 1.22584 0.92275 1.03769 0.84577 1.21820 1.01038 0.94428 0.98391 1.22054 0.96157 0.95475 0.94302 1.22193 0.96436 0.84632 0.92622 1.46322 1.34589 1.04924 1.50839 1.19389 1.10990 0.86555 1.18811 0.90177 1.25528 0.98648 1.00910 1.00963 1.70006 1.20787 1.31703 1.37770 0.85180 0.77957 0.79740 0.77094 1.21695 1.22261 1.19287 1.22785 0.92693 0.92571 0.91323 1.21336 0.97178 1.00580 0.93637 1.21375 0.97698 0.84122 0.96557 1.22241 0.92004 1.03632 0.97599 1.21708 0.98623 1.03910 0.93866 1.20596 0.86247 0.75177 0.87768 1.90720 1.18289 1.53126 1.88131 1.45340 1.10362 1.70299 1.09231 1.21568 0.78763 1.01578 0.97508 0.87296 0.90976 0.89688 0.84302 0.89378 0.88655 0.91030 0.95335 0.96267 0.94570 0.92755 0.93491 0.93265 0.93341 0.90606 0.91252 0.86819 0.86323 0.86799 0.90400 0.76482 0.86575 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.08 71.98 0.58 -0.07 16 2 C -0.09 -1.09 0.50 -52.83 -0.03 -1.11 16 3 C 0.52 11.23 4.72 87.66 0.41 11.65 16 4 O -0.58 -18.04 14.93 -3.04 -0.05 -18.08 16 5 N -0.60 -12.68 2.94 -819.50 -2.41 -15.09 16 6 C 0.09 1.29 3.94 86.26 0.34 1.63 16 7 C -0.12 -2.45 4.92 30.44 0.15 -2.30 16 8 C -0.08 -2.55 0.77 -52.03 -0.04 -2.59 16 9 C 0.17 7.59 6.64 86.31 0.57 8.17 16 10 N -0.64 -31.70 3.53 -722.61 -2.55 -34.25 16 11 C -0.23 -12.76 10.70 84.03 0.90 -11.86 16 12 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 13 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 14 N -0.95 -58.17 11.39 21.65 0.25 -57.93 16 15 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.13 4.68 7.73 86.32 0.67 5.35 16 20 C -0.09 -3.01 5.21 30.60 0.16 -2.85 16 21 C 0.13 3.49 6.29 86.42 0.54 4.03 16 22 C -0.12 -1.17 4.54 30.74 0.14 -1.03 16 23 C -0.14 -2.82 5.50 29.71 0.16 -2.66 16 24 C 0.51 13.51 7.44 87.71 0.65 14.16 16 25 O -0.62 -22.71 17.78 -3.04 -0.05 -22.77 16 26 N -0.70 -13.74 5.03 -467.28 -2.35 -16.09 16 27 C 0.13 1.51 5.37 86.50 0.46 1.97 16 28 H 0.11 -0.17 8.06 -2.39 -0.02 -0.19 16 29 H 0.07 0.33 8.07 -2.39 -0.02 0.31 16 30 H 0.08 0.37 4.89 -2.39 -0.01 0.36 16 31 H 0.14 1.02 2.56 -2.39 -0.01 1.01 16 32 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.10 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.07 1.46 7.71 -2.39 -0.02 1.44 16 35 H 0.03 1.53 7.12 -2.39 -0.02 1.51 16 36 H 0.02 0.90 8.09 -2.38 -0.02 0.88 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 39 H 0.05 1.62 7.41 -2.39 -0.02 1.60 16 40 H 0.05 2.03 8.01 -2.38 -0.02 2.01 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.99 7.49 -2.39 -0.02 1.97 16 43 H 0.07 2.19 7.00 -2.39 -0.02 2.17 16 44 H 0.11 0.82 4.28 -2.39 -0.01 0.81 16 45 H 0.12 0.50 8.13 -2.39 -0.02 0.48 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.08 1.97 7.43 -2.38 -0.02 1.95 16 48 H 0.40 7.63 8.80 -92.71 -0.82 6.81 16 49 H 0.12 0.47 8.11 -2.39 -0.02 0.46 16 50 H 0.08 1.07 7.76 -2.39 -0.02 1.05 16 Total: -1.00 -84.73 371.96 1.15 -83.58 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.15 Total: 13.21 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 6.15 Total: 19.05 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -7.07 Total: -123.36 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.10 Total: -40.85 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -84.73 1.15 -83.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035773852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.565 kcal (2) G-P(sol) polarization free energy of solvation -84.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds