Wall clock time and date at job start Tue Mar 31 2020 19:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.60548 * 2 1 4 4 O 1.21281 * 120.00271 * 126.90924 * 3 2 1 5 5 N 1.34779 * 120.00141 * 306.90831 * 3 2 1 6 6 C 1.46889 * 120.46025 * 354.22539 * 5 3 2 7 7 C 1.52860 * 109.01623 * 235.48428 * 6 5 3 8 8 C 1.52669 * 109.17736 * 307.81777 * 7 6 5 9 9 C 1.53485 * 113.62346 * 188.98830 * 8 7 6 10 10 N 1.47662 * 85.98816 * 137.71630 * 9 8 7 11 11 C 1.36939 * 134.45658 * 155.70774 * 10 9 8 12 12 H 1.08007 * 119.99653 * 175.02645 * 11 10 9 13 13 C 1.38809 * 119.99872 * 355.01964 * 11 10 9 14 14 N 1.31614 * 120.00252 * 5.08234 * 13 11 10 15 15 Si 1.86800 * 119.99768 * 185.07740 * 13 11 10 16 16 H 1.48500 * 109.47056 * 95.00099 * 15 13 11 17 17 H 1.48501 * 109.47345 * 214.99955 * 15 13 11 18 18 H 1.48503 * 109.47405 * 335.00284 * 15 13 11 19 19 C 1.47663 * 91.08537 * 335.68284 * 10 9 8 20 20 C 1.52678 * 113.18210 * 57.46457 * 8 7 6 21 21 C 1.46882 * 120.47106 * 174.50134 * 5 3 2 22 22 C 1.53347 * 109.60333 * 120.32331 * 2 1 3 23 23 C 1.53071 * 108.42540 * 52.39132 * 22 2 1 24 24 C 1.50177 * 109.89259 * 48.89604 * 23 22 2 25 25 O 1.21277 * 118.24242 * 162.44525 * 24 23 22 26 26 N 1.33350 * 123.51051 * 342.42025 * 24 23 22 27 27 C 1.45757 * 124.10143 * 2.22397 * 26 24 23 28 28 H 1.09000 * 109.46908 * 64.83171 * 1 2 3 29 29 H 1.08997 * 109.47407 * 184.83773 * 1 2 3 30 30 H 1.09008 * 109.46631 * 304.83443 * 1 2 3 31 31 H 1.08995 * 109.59234 * 355.31069 * 6 5 3 32 32 H 1.09006 * 109.59006 * 115.74958 * 6 5 3 33 33 H 1.09003 * 109.60614 * 187.84413 * 7 6 5 34 34 H 1.08995 * 109.44160 * 67.69964 * 7 6 5 35 35 H 1.08997 * 113.79043 * 251.98541 * 9 8 7 36 36 H 1.09003 * 113.78889 * 23.44476 * 9 8 7 37 37 H 0.96993 * 120.00177 * 179.97438 * 14 13 11 38 38 H 1.09009 * 113.79334 * 270.05003 * 19 10 9 39 39 H 1.09000 * 113.89913 * 138.59585 * 19 10 9 40 40 H 1.09002 * 109.53301 * 182.51712 * 20 8 7 41 41 H 1.08997 * 109.53147 * 62.29675 * 20 8 7 42 42 H 1.09004 * 109.58642 * 244.26019 * 21 5 3 43 43 H 1.09002 * 109.58649 * 4.69100 * 21 5 3 44 44 H 1.09004 * 109.67306 * 172.11839 * 22 2 1 45 45 H 1.08996 * 109.67690 * 292.65233 * 22 2 1 46 46 H 1.09003 * 109.40125 * 169.02938 * 23 22 2 47 47 H 1.09003 * 109.39439 * 288.85475 * 23 22 2 48 48 H 0.96993 * 117.95027 * 182.22365 * 26 24 23 49 49 H 1.09007 * 109.29799 * 220.60547 * 27 26 24 50 50 H 1.08997 * 109.30051 * 101.24055 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.8333 1.7792 0.8398 5 7 1.6014 2.2896 -0.9333 6 6 0.7351 1.8354 -2.0291 7 6 1.3805 2.2113 -3.3628 8 6 1.7262 3.6983 -3.3511 9 6 2.1788 4.2353 -4.7159 10 7 1.3375 5.4112 -4.4161 11 6 1.3329 6.7172 -4.8278 12 1 0.5410 7.3802 -4.5116 13 6 2.3458 7.1889 -5.6513 14 7 3.2548 6.3591 -6.1178 15 14 2.4188 9.0013 -6.0976 16 1 3.3346 9.7045 -5.1637 17 1 2.9202 9.1491 -7.4876 18 1 1.0598 9.5912 -5.9963 19 6 0.5028 4.6142 -3.4949 20 6 2.6513 4.0912 -2.2019 21 6 1.9927 3.7041 -0.8724 22 6 2.0445 -0.7293 1.2470 23 6 1.3719 -2.1026 1.3162 24 6 1.4773 -2.7909 -0.0144 25 8 1.2952 -3.9892 -0.0567 26 7 1.7598 -2.1549 -1.1519 27 6 2.0464 -0.7286 -1.2413 28 1 -0.3633 0.4370 -0.9301 29 1 -0.3634 -1.0240 0.0867 30 1 -0.3633 0.5871 0.8436 31 1 0.6148 0.7534 -1.9754 32 1 -0.2390 2.3180 -1.9490 33 1 0.6851 2.0053 -4.1766 34 1 2.2896 1.6268 -3.5035 35 1 3.2443 4.4590 -4.7690 36 1 1.8241 3.6445 -5.5604 37 1 3.9624 6.6887 -6.6935 38 1 -0.3502 4.1360 -3.9766 39 1 0.2349 5.1375 -2.5771 40 1 2.8228 5.1675 -2.2237 41 1 3.6018 3.5676 -2.3038 42 1 1.1091 4.3210 -0.7089 43 1 2.7007 3.8526 -0.0570 44 1 3.1254 -0.8531 1.1798 45 1 1.7952 -0.1533 2.1381 46 1 1.8635 -2.7086 2.0773 47 1 0.3206 -1.9781 1.5758 48 1 1.7757 -2.6739 -1.9711 49 1 1.5617 -0.3186 -2.1274 50 1 3.1233 -0.5819 -1.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035773855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:17 Heat of formation + Delta-G solvation = 0.444372 kcal Electronic energy + Delta-G solvation = -30904.474150 eV Core-core repulsion = 26933.872780 eV Total energy + Delta-G solvation = -3970.601370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.65599 -40.06382 -38.89547 -36.94161 -35.98367 -33.76125 -32.64743 -31.92156 -30.77553 -29.96772 -27.47776 -26.98317 -25.23808 -25.06422 -24.03104 -23.39695 -22.40851 -21.30229 -20.22121 -18.78795 -17.71289 -17.42897 -16.89069 -16.75657 -16.29464 -16.18365 -15.52728 -15.23327 -14.97315 -14.90193 -14.72963 -14.29872 -14.02538 -13.91916 -13.80811 -13.57625 -13.12692 -12.81900 -12.70777 -12.45599 -12.28746 -12.22915 -12.16886 -11.82625 -11.68245 -11.32839 -11.22790 -11.15086 -10.97857 -10.91700 -10.87900 -10.37776 -10.23168 -10.05139 -9.86736 -9.74912 -9.58095 -9.44925 -9.35273 -8.78283 -8.54175 -6.89842 -5.79982 -3.11723 2.32287 2.41297 2.82836 2.99379 3.36328 3.41568 3.43492 3.97967 4.06398 4.23065 4.28778 4.42168 4.57771 4.67288 4.77792 4.91277 4.93269 5.00149 5.09582 5.11803 5.24167 5.25510 5.26345 5.36376 5.40411 5.45768 5.46643 5.59204 5.63608 5.71188 5.78781 5.80625 5.84281 5.89072 6.08713 6.19998 6.22453 6.35044 6.40898 6.54488 6.57870 6.74273 6.80707 6.94765 7.18698 7.34144 7.35490 7.55181 7.88016 7.96282 8.04032 9.02053 9.68524 10.58153 11.36812 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.002646 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.905598 B =10580.752700 C =10939.487971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C 0.528 3.472 4 O -0.538 6.538 5 N -0.598 5.598 6 C 0.086 3.914 7 C -0.122 4.122 8 C -0.108 4.108 9 C 0.170 3.830 10 N -0.608 5.608 11 C -0.223 4.223 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.920 5.920 15 Si 0.909 3.091 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.127 3.873 20 C -0.096 4.096 21 C 0.112 3.888 22 C -0.098 4.098 23 C -0.137 4.137 24 C 0.521 3.479 25 O -0.559 6.559 26 N -0.715 5.715 27 C 0.111 3.889 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.253 0.747 38 H 0.030 0.970 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.403 0.597 49 H 0.096 0.904 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -15.167 12.090 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.098 4.098 3 C 0.314 3.686 4 O -0.415 6.415 5 N -0.330 5.330 6 C -0.036 4.036 7 C -0.161 4.161 8 C -0.109 4.109 9 C 0.045 3.955 10 N -0.334 5.334 11 C -0.351 4.351 12 H 0.095 0.905 13 C -0.203 4.203 14 N -0.567 5.567 15 Si 0.740 3.260 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.207 1.207 19 C 0.001 3.999 20 C -0.134 4.134 21 C -0.009 4.009 22 C -0.136 4.136 23 C -0.177 4.177 24 C 0.308 3.692 25 O -0.438 6.438 26 N -0.367 5.367 27 C -0.013 4.013 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.239 0.761 49 H 0.114 0.886 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.727 -15.136 12.549 20.221 hybrid contribution -0.026 1.016 -0.999 1.425 sum -4.753 -14.119 11.550 18.850 Atomic orbital electron populations 1.22362 0.91857 1.03415 1.04416 1.21049 0.98120 0.93258 0.97360 1.20074 0.80893 0.86384 0.81251 1.90700 1.33501 1.78663 1.38615 1.48061 1.49478 1.09572 1.25938 1.22382 0.93945 1.00440 0.86830 1.21804 1.00864 0.97561 0.95844 1.22367 0.98033 0.91934 0.98556 1.22287 0.98014 0.85443 0.89763 1.45959 1.32588 1.04731 1.50142 1.19008 1.06935 0.83794 1.25323 0.90461 1.24761 0.97693 0.97805 1.00010 1.69811 1.16636 1.32886 1.37345 0.86150 0.77591 0.84791 0.77513 1.21566 1.21768 1.20694 1.22578 0.92768 0.91174 0.93412 1.21479 0.97402 1.02773 0.91726 1.21743 1.00263 0.79499 0.99418 1.21509 1.01106 0.93893 0.97055 1.21752 1.04157 0.96919 0.94854 1.20210 0.75379 0.87267 0.86356 1.90769 1.50776 1.15182 1.87097 1.45393 1.71353 1.09684 1.10260 1.21736 1.01620 0.80220 0.97771 0.89894 0.91295 0.91197 0.88446 0.90868 0.90509 0.91737 0.90798 0.95905 0.93697 0.95247 0.94161 0.89413 0.92092 0.91311 0.89301 0.90227 0.89457 0.87753 0.87791 0.76114 0.88587 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 7.57 37.16 0.28 -0.79 16 2 C -0.09 -0.76 0.49 -155.53 -0.08 -0.84 16 3 C 0.53 6.01 6.46 -10.99 -0.07 5.94 16 4 O -0.54 -8.03 15.38 5.56 0.09 -7.94 16 5 N -0.60 -6.67 2.94 -172.95 -0.51 -7.18 16 6 C 0.09 0.79 4.05 -3.90 -0.02 0.78 16 7 C -0.12 -1.42 5.21 -26.97 -0.14 -1.56 16 8 C -0.11 -1.73 0.77 -154.43 -0.12 -1.85 16 9 C 0.17 3.69 6.71 -3.16 -0.02 3.67 16 10 N -0.61 -14.59 3.53 -179.78 -0.63 -15.23 16 11 C -0.22 -6.02 10.69 -15.06 -0.16 -6.19 16 12 H 0.08 2.04 7.83 -52.48 -0.41 1.62 16 13 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 14 N -0.92 -26.49 11.36 55.49 0.63 -25.86 16 15 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.13 2.32 7.72 -3.15 -0.02 2.29 16 20 C -0.10 -1.50 5.22 -26.72 -0.14 -1.64 16 21 C 0.11 1.48 6.31 -3.66 -0.02 1.46 16 22 C -0.10 -0.78 4.29 -26.51 -0.11 -0.90 16 23 C -0.14 -1.01 5.39 -28.10 -0.15 -1.16 16 24 C 0.52 5.05 6.95 -11.87 -0.08 4.97 16 25 O -0.56 -7.71 17.78 5.56 0.10 -7.61 16 26 N -0.71 -5.45 5.35 -61.39 -0.33 -5.78 16 27 C 0.11 0.80 5.54 -4.49 -0.02 0.77 16 28 H 0.08 0.50 4.57 -51.93 -0.24 0.26 16 29 H 0.07 0.42 5.61 -51.93 -0.29 0.13 16 30 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.10 0.66 2.22 -51.93 -0.12 0.55 16 32 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 33 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.83 7.02 -51.93 -0.36 1.46 16 36 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.03 0.52 8.07 -51.92 -0.42 0.10 16 39 H 0.04 0.71 7.41 -51.93 -0.38 0.33 16 40 H 0.09 1.63 8.01 -51.93 -0.42 1.21 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 43 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 44 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 45 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.63 6.84 -51.93 -0.36 0.27 16 48 H 0.40 2.71 8.80 -40.82 -0.36 2.35 16 49 H 0.10 0.57 5.15 -51.93 -0.27 0.31 16 50 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -33.67 371.49 -8.78 -42.45 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.72 Total: 0.18 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.98 Total: 4.69 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.84 Total: -54.05 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.18 Total: -15.55 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.67 -8.78 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035773855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.896 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds