Wall clock time and date at job start Tue Mar 31 2020 19:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.67085 * 2 1 4 4 O 1.21283 * 120.00033 * 112.15226 * 3 2 1 5 5 N 1.34778 * 120.00065 * 292.14414 * 3 2 1 6 6 C 1.46949 * 120.43969 * 6.02871 * 5 3 2 7 7 C 1.53585 * 108.52851 * 125.75104 * 6 5 3 8 8 H 1.08997 * 110.60162 * 172.77498 * 7 6 5 9 9 C 1.53367 * 108.68878 * 294.36127 * 7 6 5 10 10 C 1.53011 * 109.27812 * 60.31336 * 9 7 6 11 11 C 1.53012 * 109.80155 * 60.55792 * 10 9 7 12 12 C 1.53368 * 109.24764 * 299.42905 * 11 10 9 13 13 H 1.09000 * 110.59423 * 177.53993 * 12 11 10 14 14 C 1.46946 * 120.44368 * 185.74424 * 5 3 2 15 15 N 1.47564 * 107.98931 * 56.38210 * 12 11 10 16 16 C 1.36936 * 121.61028 * 122.22237 * 15 12 11 17 17 H 1.08004 * 120.00075 * 28.91035 * 16 15 12 18 18 C 1.38812 * 120.00142 * 208.90701 * 16 15 12 19 19 N 1.31612 * 120.00031 * 16.33708 * 18 16 15 20 20 Si 1.86807 * 120.00120 * 196.33281 * 18 16 15 21 21 H 1.48499 * 109.46968 * 94.98073 * 20 18 16 22 22 H 1.48492 * 109.47097 * 214.98107 * 20 18 16 23 23 H 1.48507 * 109.46895 * 334.98251 * 20 18 16 24 24 C 1.53341 * 109.70691 * 120.51995 * 2 1 3 25 25 C 1.52923 * 108.67442 * 52.21418 * 24 2 1 26 26 N 1.45756 * 110.48665 * 50.76244 * 25 24 2 27 27 C 1.33361 * 124.10113 * 340.91270 * 26 25 24 28 28 O 1.21281 * 118.24090 * 182.50997 * 27 26 25 29 29 C 1.50178 * 123.51147 * 2.23465 * 27 26 25 30 30 H 1.09000 * 109.47610 * 172.02507 * 1 2 3 31 31 H 1.09007 * 109.47061 * 292.02248 * 1 2 3 32 32 H 1.08999 * 109.47593 * 52.02297 * 1 2 3 33 33 H 1.09007 * 109.62228 * 245.45513 * 6 5 3 34 34 H 1.08999 * 109.63042 * 5.83904 * 6 5 3 35 35 H 1.08999 * 109.50972 * 180.25066 * 9 7 6 36 36 H 1.09004 * 109.50585 * 300.33211 * 9 7 6 37 37 H 1.09005 * 109.41738 * 180.66095 * 10 9 7 38 38 H 1.09006 * 109.41291 * 300.45841 * 10 9 7 39 39 H 1.08998 * 109.50529 * 59.35392 * 11 10 9 40 40 H 1.08990 * 109.50601 * 179.44825 * 11 10 9 41 41 H 1.09002 * 109.61914 * 353.94938 * 14 5 3 42 42 H 1.08995 * 109.62134 * 114.51026 * 14 5 3 43 43 H 0.97000 * 120.00480 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.60774 * 171.97412 * 24 2 1 45 45 H 1.09000 * 109.60405 * 292.46233 * 24 2 1 46 46 H 1.09008 * 109.29959 * 171.06352 * 25 24 2 47 47 H 1.08993 * 109.30202 * 290.65095 * 25 24 2 48 48 H 0.96992 * 117.95550 * 160.94406 * 26 25 24 49 49 H 1.08998 * 109.39894 * 102.53612 * 29 27 26 50 50 H 1.08999 * 109.39868 * 222.28234 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.6143 1.8568 0.9728 5 7 1.8498 2.2017 -1.0811 6 6 1.0393 1.7280 -2.2117 7 6 -0.0583 2.7647 -2.4936 8 1 -0.6004 2.5112 -3.4045 9 6 -1.0118 2.8097 -1.2932 10 6 -0.2298 3.2139 -0.0417 11 6 0.3849 4.6010 -0.2401 12 6 1.3443 4.5625 -1.4361 13 1 1.7623 5.5514 -1.6242 14 6 2.4480 3.5425 -1.1424 15 7 0.5892 4.0856 -2.6108 16 6 0.4936 4.8328 -3.7543 17 1 1.2865 5.5159 -4.0209 18 6 -0.6225 4.7124 -4.5708 19 7 -1.7168 4.1446 -4.1100 20 14 -0.5714 5.3563 -6.3236 21 1 -0.2149 4.2495 -7.2473 22 1 -1.9043 5.8978 -6.6911 23 1 0.4459 6.4334 -6.4258 24 6 2.0470 -0.7331 1.2436 25 6 1.3765 -2.1055 1.3171 26 7 1.5042 -2.8045 0.0445 27 6 1.7814 -2.2043 -1.1137 28 8 1.8177 -2.8835 -2.1178 29 6 2.0452 -0.7315 -1.2420 30 1 -0.3634 -1.0177 -0.1426 31 1 -0.3633 0.3854 0.9527 32 1 -0.3634 0.6323 -0.8100 33 1 1.6709 1.6147 -3.0928 34 1 0.5856 0.7693 -1.9607 35 1 -1.7997 3.5391 -1.4813 36 1 -1.4554 1.8253 -1.1437 37 1 -0.9032 3.2352 0.8152 38 1 0.5634 2.4886 0.1399 39 1 -0.4063 5.3258 -0.4315 40 1 0.9324 4.8882 0.6575 41 1 2.9171 3.7780 -0.1871 42 1 3.1932 3.5749 -1.9371 43 1 -2.4966 4.0601 -4.6807 44 1 3.1276 -0.8574 1.1721 45 1 1.8010 -0.1577 2.1360 46 1 1.8498 -2.6962 2.1015 47 1 0.3194 -1.9780 1.5502 48 1 1.3793 -3.7664 0.0395 49 1 3.1174 -0.5631 -1.3425 50 1 1.5353 -0.3480 -2.1257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039681821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:43 Heat of formation + Delta-G solvation = -2.628667 kcal Electronic energy + Delta-G solvation = -32881.019683 eV Core-core repulsion = 28910.285056 eV Total energy + Delta-G solvation = -3970.734627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.72742 -39.98053 -38.00138 -36.60417 -34.62877 -33.65817 -32.77794 -31.86315 -30.37481 -29.81452 -27.99088 -27.02044 -25.70201 -24.83619 -23.68154 -22.70604 -21.48222 -21.19051 -19.66193 -18.69384 -18.27132 -17.56348 -16.74751 -16.58346 -16.05531 -15.62353 -15.33555 -15.11599 -14.71808 -14.55106 -14.07330 -14.00474 -13.78654 -13.64639 -13.33656 -13.07195 -12.91478 -12.69580 -12.45570 -12.11715 -12.04934 -11.97149 -11.74179 -11.55179 -11.36114 -11.20461 -11.06752 -10.93284 -10.74286 -10.64960 -10.30323 -10.22213 -10.11908 -10.06085 -10.01145 -9.55380 -9.38308 -9.25971 -9.12427 -8.55866 -7.93356 -6.65656 -5.87690 -3.32582 2.53728 2.80680 3.13039 3.29267 3.33041 3.41506 3.41650 4.26639 4.38984 4.43318 4.50868 4.60279 4.86795 4.97134 5.11006 5.12234 5.27293 5.29225 5.44812 5.47422 5.59620 5.65166 5.70273 5.72558 5.74984 5.82267 5.86046 5.90883 5.92952 5.97426 6.07059 6.16672 6.26994 6.35275 6.42029 6.46719 6.58494 6.60175 6.68668 6.82025 6.98635 7.04572 7.07069 7.15025 7.41864 7.51328 7.69975 7.83341 8.08401 8.32159 8.42246 9.08720 9.70003 10.32079 11.19062 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.004451 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.925844 B = 6289.601052 C = 7091.889976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C 0.526 3.474 4 O -0.552 6.552 5 N -0.583 5.583 6 C 0.061 3.939 7 C 0.178 3.822 8 H 0.117 0.883 9 C -0.119 4.119 10 C -0.140 4.140 11 C -0.121 4.121 12 C 0.152 3.848 13 H 0.078 0.922 14 C 0.101 3.899 15 N -0.577 5.577 16 C -0.251 4.251 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.111 4.111 25 C 0.109 3.891 26 N -0.721 5.721 27 C 0.527 3.473 28 O -0.556 6.556 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.398 0.602 49 H 0.103 0.897 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -10.310 10.819 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.083 4.083 3 C 0.315 3.685 4 O -0.431 6.431 5 N -0.315 5.315 6 C -0.062 4.062 7 C 0.070 3.930 8 H 0.135 0.865 9 C -0.157 4.157 10 C -0.178 4.178 11 C -0.161 4.161 12 C 0.044 3.956 13 H 0.096 0.904 14 C -0.023 4.023 15 N -0.298 5.298 16 C -0.380 4.380 17 H 0.085 0.915 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.149 4.149 25 C -0.015 4.015 26 N -0.373 5.373 27 C 0.314 3.686 28 O -0.434 6.434 29 C -0.181 4.181 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.233 0.767 49 H 0.122 0.878 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.592 -10.136 10.664 15.413 hybrid contribution -0.258 0.099 -0.811 0.857 sum 4.334 -10.038 9.853 14.718 Atomic orbital electron populations 1.22544 0.91786 1.03571 1.04920 1.20838 0.98091 0.93121 0.96249 1.19930 0.79150 0.86676 0.82764 1.90662 1.44077 1.74923 1.33436 1.48095 1.49792 1.16053 1.17548 1.23328 0.95260 0.99562 0.88072 1.21132 0.89642 0.83674 0.98533 0.86546 1.21955 0.99290 0.99505 0.95000 1.22165 0.99966 0.98588 0.97116 1.21908 0.99398 0.97384 0.97370 1.21149 0.91275 0.95102 0.88109 0.90409 1.22137 0.96427 0.82197 1.01539 1.44362 1.59472 1.15565 1.10410 1.19165 1.00685 1.20534 0.97602 0.91510 1.25035 0.94525 1.00291 0.99398 1.69943 1.01703 1.47660 1.34849 0.86275 0.76913 0.78566 0.85001 1.21453 1.21836 1.20462 1.21741 1.00896 0.94082 0.98207 1.21466 1.01354 0.93628 0.85024 1.45493 1.72284 1.11661 1.07898 1.20029 0.75413 0.90464 0.82655 1.90771 1.52191 1.65154 1.35303 1.22229 1.04747 0.91075 1.00052 0.91554 0.91229 0.88618 0.91579 0.89205 0.90636 0.94210 0.95191 0.89998 0.92484 0.94009 0.89985 0.91934 0.93560 0.90551 0.88530 0.90289 0.91078 0.76681 0.87836 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 6.36 37.15 0.24 -1.76 16 2 C -0.08 -0.96 0.49 -155.45 -0.08 -1.03 16 3 C 0.53 8.08 4.13 -10.98 -0.05 8.03 16 4 O -0.55 -9.79 15.19 5.55 0.08 -9.71 16 5 N -0.58 -9.52 1.65 -172.53 -0.28 -9.80 16 6 C 0.06 1.02 3.90 -3.49 -0.01 1.01 16 7 C 0.18 3.64 2.64 -66.85 -0.18 3.46 16 8 H 0.12 2.76 5.93 -51.93 -0.31 2.45 16 9 C -0.12 -2.30 5.02 -26.54 -0.13 -2.43 16 10 C -0.14 -2.53 5.09 -26.72 -0.14 -2.67 16 11 C -0.12 -2.30 5.58 -26.53 -0.15 -2.45 16 12 C 0.15 2.95 3.62 -67.09 -0.24 2.71 16 13 H 0.08 1.51 8.01 -51.93 -0.42 1.09 16 14 C 0.10 1.75 5.85 -3.73 -0.02 1.73 16 15 N -0.58 -12.87 2.53 -155.72 -0.39 -13.26 16 16 C -0.25 -6.29 9.71 -15.06 -0.15 -6.44 16 17 H 0.07 1.68 7.88 -52.48 -0.41 1.26 16 18 C 0.01 0.17 5.03 -17.43 -0.09 0.08 16 19 N -0.90 -23.68 10.88 55.49 0.60 -23.08 16 20 Si 0.90 20.58 29.58 -169.99 -5.03 15.55 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 C -0.11 -1.10 4.42 -26.59 -0.12 -1.21 16 25 C 0.11 0.80 6.41 -4.48 -0.03 0.77 16 26 N -0.72 -6.67 5.24 -61.38 -0.32 -6.99 16 27 C 0.53 6.70 7.04 -11.87 -0.08 6.61 16 28 O -0.56 -9.24 17.78 5.56 0.10 -9.14 16 29 C -0.14 -1.74 4.24 -28.10 -0.12 -1.86 16 30 H 0.07 0.69 6.20 -51.93 -0.32 0.36 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.10 1.29 1.95 -51.93 -0.10 1.19 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.32 2.46 -51.93 -0.13 1.19 16 35 H 0.07 1.74 7.93 -51.93 -0.41 1.32 16 36 H 0.04 0.68 6.09 -51.93 -0.32 0.37 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.40 1.75 -52.42 -0.09 1.31 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.41 6.98 -51.93 -0.36 1.04 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 44 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.10 0.98 7.78 -51.93 -0.40 0.58 16 46 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 47 H 0.07 0.47 7.02 -51.93 -0.36 0.10 16 48 H 0.40 3.15 8.80 -40.82 -0.36 2.79 16 49 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 50 H 0.12 1.62 4.79 -51.93 -0.25 1.37 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -29.88 348.79 -8.51 -38.39 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.18 Total: 8.22 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.34 Total: 4.55 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.40 Total: -53.13 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.88 -8.51 -38.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039681821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.764 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds