Wall clock time and date at job start Tue Mar 31 2020 19:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.67085 * 2 1 4 4 O 1.21283 * 120.00033 * 112.15226 * 3 2 1 5 5 N 1.34778 * 120.00065 * 292.14414 * 3 2 1 6 6 C 1.46949 * 120.43969 * 6.02871 * 5 3 2 7 7 C 1.53585 * 108.52851 * 125.75104 * 6 5 3 8 8 H 1.08997 * 110.60162 * 172.77498 * 7 6 5 9 9 C 1.53367 * 108.68878 * 294.36127 * 7 6 5 10 10 C 1.53011 * 109.27812 * 60.31336 * 9 7 6 11 11 C 1.53012 * 109.80155 * 60.55792 * 10 9 7 12 12 C 1.53368 * 109.24764 * 299.42905 * 11 10 9 13 13 H 1.09000 * 110.59423 * 177.53993 * 12 11 10 14 14 C 1.46946 * 120.44368 * 185.74424 * 5 3 2 15 15 N 1.47564 * 107.98931 * 56.38210 * 12 11 10 16 16 C 1.36936 * 121.61028 * 122.22237 * 15 12 11 17 17 H 1.08004 * 120.00075 * 28.91035 * 16 15 12 18 18 C 1.38812 * 120.00142 * 208.90701 * 16 15 12 19 19 N 1.31612 * 120.00031 * 16.33708 * 18 16 15 20 20 Si 1.86807 * 120.00120 * 196.33281 * 18 16 15 21 21 H 1.48499 * 109.46968 * 94.98073 * 20 18 16 22 22 H 1.48492 * 109.47097 * 214.98107 * 20 18 16 23 23 H 1.48507 * 109.46895 * 334.98251 * 20 18 16 24 24 C 1.53341 * 109.70691 * 120.51995 * 2 1 3 25 25 C 1.52923 * 108.67442 * 52.21418 * 24 2 1 26 26 N 1.45756 * 110.48665 * 50.76244 * 25 24 2 27 27 C 1.33361 * 124.10113 * 340.91270 * 26 25 24 28 28 O 1.21281 * 118.24090 * 182.50997 * 27 26 25 29 29 C 1.50178 * 123.51147 * 2.23465 * 27 26 25 30 30 H 1.09000 * 109.47610 * 172.02507 * 1 2 3 31 31 H 1.09007 * 109.47061 * 292.02248 * 1 2 3 32 32 H 1.08999 * 109.47593 * 52.02297 * 1 2 3 33 33 H 1.09007 * 109.62228 * 245.45513 * 6 5 3 34 34 H 1.08999 * 109.63042 * 5.83904 * 6 5 3 35 35 H 1.08999 * 109.50972 * 180.25066 * 9 7 6 36 36 H 1.09004 * 109.50585 * 300.33211 * 9 7 6 37 37 H 1.09005 * 109.41738 * 180.66095 * 10 9 7 38 38 H 1.09006 * 109.41291 * 300.45841 * 10 9 7 39 39 H 1.08998 * 109.50529 * 59.35392 * 11 10 9 40 40 H 1.08990 * 109.50601 * 179.44825 * 11 10 9 41 41 H 1.09002 * 109.61914 * 353.94938 * 14 5 3 42 42 H 1.08995 * 109.62134 * 114.51026 * 14 5 3 43 43 H 0.97000 * 120.00480 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.60774 * 171.97412 * 24 2 1 45 45 H 1.09000 * 109.60405 * 292.46233 * 24 2 1 46 46 H 1.09008 * 109.29959 * 171.06352 * 25 24 2 47 47 H 1.08993 * 109.30202 * 290.65095 * 25 24 2 48 48 H 0.96992 * 117.95550 * 160.94406 * 26 25 24 49 49 H 1.08998 * 109.39894 * 102.53612 * 29 27 26 50 50 H 1.08999 * 109.39868 * 222.28234 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.6143 1.8568 0.9728 5 7 1.8498 2.2017 -1.0811 6 6 1.0393 1.7280 -2.2117 7 6 -0.0583 2.7647 -2.4936 8 1 -0.6004 2.5112 -3.4045 9 6 -1.0118 2.8097 -1.2932 10 6 -0.2298 3.2139 -0.0417 11 6 0.3849 4.6010 -0.2401 12 6 1.3443 4.5625 -1.4361 13 1 1.7623 5.5514 -1.6242 14 6 2.4480 3.5425 -1.1424 15 7 0.5892 4.0856 -2.6108 16 6 0.4936 4.8328 -3.7543 17 1 1.2865 5.5159 -4.0209 18 6 -0.6225 4.7124 -4.5708 19 7 -1.7168 4.1446 -4.1100 20 14 -0.5714 5.3563 -6.3236 21 1 -0.2149 4.2495 -7.2473 22 1 -1.9043 5.8978 -6.6911 23 1 0.4459 6.4334 -6.4258 24 6 2.0470 -0.7331 1.2436 25 6 1.3765 -2.1055 1.3171 26 7 1.5042 -2.8045 0.0445 27 6 1.7814 -2.2043 -1.1137 28 8 1.8177 -2.8835 -2.1178 29 6 2.0452 -0.7315 -1.2420 30 1 -0.3634 -1.0177 -0.1426 31 1 -0.3633 0.3854 0.9527 32 1 -0.3634 0.6323 -0.8100 33 1 1.6709 1.6147 -3.0928 34 1 0.5856 0.7693 -1.9607 35 1 -1.7997 3.5391 -1.4813 36 1 -1.4554 1.8253 -1.1437 37 1 -0.9032 3.2352 0.8152 38 1 0.5634 2.4886 0.1399 39 1 -0.4063 5.3258 -0.4315 40 1 0.9324 4.8882 0.6575 41 1 2.9171 3.7780 -0.1871 42 1 3.1932 3.5749 -1.9371 43 1 -2.4966 4.0601 -4.6807 44 1 3.1276 -0.8574 1.1721 45 1 1.8010 -0.1577 2.1360 46 1 1.8498 -2.6962 2.1015 47 1 0.3194 -1.9780 1.5502 48 1 1.3793 -3.7664 0.0395 49 1 3.1174 -0.5631 -1.3425 50 1 1.5353 -0.3480 -2.1257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039681821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:42 Heat of formation + Delta-G solvation = -21.501904 kcal Electronic energy + Delta-G solvation = -32881.838088 eV Core-core repulsion = 28910.285056 eV Total energy + Delta-G solvation = -3971.553032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.93066 -41.10802 -39.37591 -37.67206 -35.89324 -35.06989 -34.31808 -33.30854 -32.14121 -30.70272 -29.03396 -28.48435 -27.17187 -26.10185 -24.96317 -23.94489 -23.02508 -22.63337 -20.93049 -20.05212 -19.45935 -18.67013 -18.07736 -17.80400 -17.10834 -16.87692 -16.64199 -16.45442 -16.07310 -15.77663 -15.63405 -15.26118 -15.14269 -14.95863 -14.61379 -14.43288 -14.21340 -14.03068 -13.75731 -13.55219 -13.32537 -13.25918 -13.03093 -12.75070 -12.68672 -12.58816 -12.43612 -12.35225 -12.08885 -12.06787 -11.94966 -11.71049 -11.62425 -11.54046 -11.31293 -11.06251 -10.96216 -10.52693 -10.30883 -10.03413 -9.44208 -8.43337 -7.80657 -5.27191 1.48005 1.51897 1.53494 1.58131 1.59571 2.01190 2.33094 2.53506 3.23246 3.32078 3.44947 3.52279 3.63637 3.73502 3.91367 4.13054 4.17083 4.17612 4.22624 4.26508 4.35278 4.40805 4.46203 4.53228 4.56100 4.60925 4.70927 4.75913 4.81556 4.84093 4.86009 4.89231 4.93839 5.04010 5.08917 5.12489 5.14847 5.24803 5.34254 5.40475 5.50971 5.56766 5.69491 5.76706 5.87054 5.90165 6.30166 6.43392 6.49391 7.13252 7.19290 7.20123 7.85531 8.44472 9.22079 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.004451 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.925844 B = 6289.601052 C = 7091.889976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C 0.527 3.473 4 O -0.569 6.569 5 N -0.586 5.586 6 C 0.077 3.923 7 C 0.174 3.826 8 H 0.083 0.917 9 C -0.107 4.107 10 C -0.135 4.135 11 C -0.118 4.118 12 C 0.146 3.854 13 H 0.073 0.927 14 C 0.109 3.891 15 N -0.592 5.592 16 C -0.257 4.257 17 H 0.062 0.938 18 C -0.037 4.037 19 N -0.918 5.918 20 Si 0.957 3.043 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.275 1.275 24 C -0.109 4.109 25 C 0.110 3.890 26 N -0.706 5.706 27 C 0.528 3.472 28 O -0.602 6.602 29 C -0.139 4.139 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.408 0.592 49 H 0.105 0.895 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -12.159 12.872 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.076 4.076 3 C 0.317 3.683 4 O -0.450 6.450 5 N -0.318 5.318 6 C -0.047 4.047 7 C 0.067 3.933 8 H 0.101 0.899 9 C -0.146 4.146 10 C -0.172 4.172 11 C -0.157 4.157 12 C 0.039 3.961 13 H 0.091 0.909 14 C -0.015 4.015 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.080 0.920 18 C -0.234 4.234 19 N -0.564 5.564 20 Si 0.787 3.213 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.200 1.200 24 C -0.147 4.147 25 C -0.013 4.013 26 N -0.357 5.357 27 C 0.316 3.684 28 O -0.484 6.484 29 C -0.178 4.178 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.131 0.869 47 H 0.107 0.893 48 H 0.245 0.755 49 H 0.123 0.877 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.340 -11.998 12.780 18.325 hybrid contribution -0.450 0.712 -1.363 1.602 sum 4.889 -11.286 11.417 16.782 Atomic orbital electron populations 1.22507 0.91157 1.04304 1.04578 1.20852 0.98400 0.90883 0.97465 1.20495 0.78374 0.87680 0.81716 1.90660 1.44756 1.75626 1.33922 1.48104 1.49887 1.15939 1.17848 1.23096 0.94012 0.99266 0.88281 1.21048 0.90755 0.83938 0.97592 0.89945 1.21788 0.98029 0.99525 0.95262 1.22149 1.00289 0.98228 0.96580 1.21854 0.98660 0.97425 0.97793 1.21267 0.91742 0.95714 0.87348 0.90905 1.21945 0.95472 0.82219 1.01893 1.44534 1.59895 1.16253 1.10682 1.19376 1.00286 1.20305 0.98734 0.92021 1.25590 0.94462 1.01255 1.02094 1.70088 1.01926 1.48972 1.35394 0.85414 0.76298 0.77962 0.81659 1.21545 1.22635 1.19970 1.21766 1.00979 0.95205 0.96783 1.21679 1.02599 0.92442 0.84539 1.45442 1.70317 1.12327 1.07613 1.19979 0.75248 0.90200 0.82982 1.90760 1.54630 1.65915 1.37101 1.22145 1.04776 0.91234 0.99685 0.89757 0.90202 0.90716 0.92169 0.86688 0.94871 0.91914 0.94237 0.88500 0.95145 0.92248 0.89233 0.91794 0.94240 0.90798 0.88214 0.86949 0.89269 0.75531 0.87700 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 6.36 71.98 0.46 -2.92 16 2 C -0.07 -1.54 0.49 -52.79 -0.03 -1.57 16 3 C 0.53 14.95 4.13 87.66 0.36 15.31 16 4 O -0.57 -18.67 15.19 -3.04 -0.05 -18.72 16 5 N -0.59 -18.35 1.65 -818.15 -1.35 -19.70 16 6 C 0.08 2.53 3.90 86.49 0.34 2.87 16 7 C 0.17 7.24 2.64 45.11 0.12 7.36 16 8 H 0.08 4.05 5.93 -2.39 -0.01 4.04 16 9 C -0.11 -4.17 5.02 30.72 0.15 -4.02 16 10 C -0.13 -4.71 5.09 30.60 0.16 -4.56 16 11 C -0.12 -4.45 5.58 30.72 0.17 -4.27 16 12 C 0.15 5.72 3.62 44.95 0.16 5.88 16 13 H 0.07 2.86 8.01 -2.39 -0.02 2.85 16 14 C 0.11 3.67 5.85 86.34 0.51 4.17 16 15 N -0.59 -26.96 2.53 -646.57 -1.64 -28.60 16 16 C -0.26 -13.23 9.71 84.03 0.82 -12.41 16 17 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 18 C -0.04 -1.96 5.03 84.86 0.43 -1.54 16 19 N -0.92 -50.19 10.88 21.65 0.24 -49.96 16 20 Si 0.96 43.34 29.58 68.60 2.03 45.37 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.11 -1.73 4.42 30.68 0.14 -1.59 16 25 C 0.11 1.09 6.41 86.49 0.55 1.64 16 26 N -0.71 -10.53 5.24 -467.29 -2.45 -12.98 16 27 C 0.53 12.25 7.04 87.71 0.62 12.87 16 28 O -0.60 -19.34 17.78 -3.03 -0.05 -19.40 16 29 C -0.14 -3.14 4.24 29.71 0.13 -3.02 16 30 H 0.08 1.41 6.20 -2.39 -0.01 1.40 16 31 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.84 1.95 -2.39 0.00 1.83 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.05 16 34 H 0.12 3.24 2.46 -2.39 -0.01 3.24 16 35 H 0.03 1.56 7.93 -2.39 -0.02 1.54 16 36 H 0.06 2.11 6.09 -2.38 -0.01 2.10 16 37 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16 38 H 0.10 3.12 1.75 -3.36 -0.01 3.11 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.92 6.98 -2.39 -0.02 2.90 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 44 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 45 H 0.10 1.60 7.78 -2.39 -0.02 1.58 16 46 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.09 0.68 7.02 -2.39 -0.02 0.66 16 48 H 0.41 5.00 8.80 -92.71 -0.82 4.19 16 49 H 0.10 2.36 8.09 -2.39 -0.02 2.34 16 50 H 0.11 2.80 4.79 -2.39 -0.01 2.78 16 Total: -1.00 -66.38 348.79 1.98 -64.40 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.18 Total: 25.37 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.07 Total: 14.21 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -5.20 Total: -111.23 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.10 Total: -38.11 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.38 1.98 -64.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039681821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.895 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds