Wall clock time and date at job start Tue Mar 31 2020 19:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.60140 * 2 1 4 4 O 1.21283 * 119.99791 * 125.76574 * 3 2 1 5 5 N 1.34776 * 119.99938 * 305.75895 * 3 2 1 6 6 C 1.46948 * 120.44209 * 176.20624 * 5 3 2 7 7 C 1.53587 * 108.52618 * 125.76770 * 6 5 3 8 8 H 1.09003 * 111.09201 * 172.47179 * 7 6 5 9 9 C 1.52863 * 108.54713 * 294.13204 * 7 6 5 10 10 C 1.53016 * 109.34694 * 60.59354 * 9 7 6 11 11 C 1.53011 * 109.79044 * 60.43802 * 10 9 7 12 12 C 1.53373 * 109.25315 * 299.41495 * 11 10 9 13 13 H 1.08990 * 110.59558 * 177.54743 * 12 11 10 14 14 C 1.47512 * 120.33934 * 355.94828 * 5 3 2 15 15 N 1.47567 * 107.97993 * 56.39184 * 12 11 10 16 16 C 1.36939 * 121.60945 * 122.25570 * 15 12 11 17 17 H 1.08002 * 120.00091 * 32.11423 * 16 15 12 18 18 C 1.38811 * 119.99923 * 212.11485 * 16 15 12 19 19 N 1.31622 * 120.00252 * 30.28203 * 18 16 15 20 20 Si 1.86799 * 119.99719 * 210.27688 * 18 16 15 21 21 H 1.48499 * 109.46871 * 90.00206 * 20 18 16 22 22 H 1.48503 * 109.47338 * 210.00030 * 20 18 16 23 23 H 1.48496 * 109.47393 * 330.00289 * 20 18 16 24 24 C 1.53342 * 109.60618 * 120.32895 * 2 1 3 25 25 C 1.53002 * 108.46487 * 52.55949 * 24 2 1 26 26 C 1.50182 * 110.00536 * 48.63487 * 25 24 2 27 27 O 1.21285 * 118.24334 * 162.55374 * 26 25 24 28 28 N 1.33347 * 123.50828 * 342.52920 * 26 25 24 29 29 C 1.45757 * 124.10567 * 2.24641 * 28 26 25 30 30 H 1.09003 * 109.47273 * 55.09534 * 1 2 3 31 31 H 1.09003 * 109.47276 * 175.10270 * 1 2 3 32 32 H 1.09003 * 109.46663 * 295.09728 * 1 2 3 33 33 H 1.09004 * 109.62770 * 6.05250 * 6 5 3 34 34 H 1.08999 * 109.62587 * 245.48182 * 6 5 3 35 35 H 1.09001 * 109.57173 * 300.57453 * 9 7 6 36 36 H 1.08993 * 109.40094 * 180.51260 * 9 7 6 37 37 H 1.09001 * 109.41539 * 300.34535 * 10 9 7 38 38 H 1.08998 * 109.41899 * 180.53979 * 10 9 7 39 39 H 1.08996 * 109.50767 * 179.47835 * 11 10 9 40 40 H 1.08998 * 109.54496 * 59.37294 * 11 10 9 41 41 H 1.08998 * 109.57250 * 114.53596 * 14 5 3 42 42 H 1.08998 * 109.75421 * 353.92249 * 14 5 3 43 43 H 0.97000 * 119.99700 * 6.58429 * 19 18 16 44 44 H 1.09007 * 109.67406 * 172.11989 * 24 2 1 45 45 H 1.09001 * 109.66956 * 292.64929 * 24 2 1 46 46 H 1.08997 * 109.25195 * 288.52725 * 25 24 2 47 47 H 1.08998 * 109.43932 * 168.85758 * 25 24 2 48 48 H 0.96999 * 117.94700 * 182.22455 * 28 26 25 49 49 H 1.09001 * 109.30364 * 220.58879 * 29 28 26 50 50 H 1.08998 * 109.13112 * 101.10742 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.8173 1.7850 0.8523 5 7 1.6191 2.2834 -0.9472 6 6 2.0401 3.6907 -0.9085 7 6 2.6771 4.0468 -2.2600 8 1 2.8850 5.1147 -2.3263 9 6 3.9660 3.2402 -2.4176 10 6 3.6362 1.7463 -2.3861 11 6 2.6879 1.4008 -3.5362 12 6 1.3890 2.2009 -3.3785 13 1 0.7138 2.0037 -4.2110 14 6 0.7391 1.8248 -2.0386 15 7 1.7401 3.6331 -3.3223 16 6 1.2257 4.5338 -4.2164 17 1 0.2338 4.3892 -4.6185 18 6 1.9792 5.6326 -4.6059 19 7 3.2923 5.5507 -4.6423 20 14 1.1293 7.2275 -5.0786 21 1 0.9677 8.0786 -3.8724 22 1 1.9507 7.9466 -6.0853 23 1 -0.2059 6.9254 -5.6537 24 6 2.0445 -0.7294 1.2468 25 6 1.3760 -2.1040 1.3145 26 6 1.4777 -2.7909 -0.0171 27 8 1.2959 -3.9893 -0.0601 28 7 1.7567 -2.1537 -1.1548 29 6 2.0430 -0.7273 -1.2435 30 1 -0.3634 0.5881 -0.8428 31 1 -0.3634 -1.0239 -0.0877 32 1 -0.3633 0.4359 0.9307 33 1 2.7695 3.8329 -0.1111 34 1 1.1731 4.3275 -0.7332 35 1 4.6484 3.4794 -1.6021 36 1 4.4348 3.4893 -3.3695 37 1 3.1595 1.5004 -1.4372 38 1 4.5556 1.1700 -2.4889 39 1 2.4635 0.3344 -3.5150 40 1 3.1588 1.6547 -4.4859 41 1 -0.2323 2.3118 -1.9536 42 1 0.6156 0.7433 -1.9825 43 1 3.7295 4.6983 -4.4902 44 1 3.1255 -0.8532 1.1797 45 1 1.7953 -0.1533 2.1379 46 1 0.3258 -1.9803 1.5788 47 1 1.8700 -2.7106 2.0735 48 1 1.7703 -2.6720 -1.9746 49 1 1.5558 -0.3164 -2.1278 50 1 3.1203 -0.5836 -1.3262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039860603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:54 Heat of formation + Delta-G solvation = -4.532298 kcal Electronic energy + Delta-G solvation = -32869.269234 eV Core-core repulsion = 28898.452060 eV Total energy + Delta-G solvation = -3970.817175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.92748 -40.10637 -38.24151 -36.79675 -34.46434 -33.63502 -32.95315 -32.40141 -31.14431 -30.10147 -27.49141 -26.78645 -25.82384 -25.03138 -23.82857 -22.56993 -21.67769 -21.56449 -20.19956 -18.86634 -18.58989 -17.41582 -17.15623 -16.60195 -16.14528 -15.98475 -15.31995 -15.18085 -14.81090 -14.47482 -14.36098 -14.17988 -13.85650 -13.83668 -13.65046 -13.17186 -13.05801 -12.69015 -12.66976 -12.45698 -12.26003 -12.23675 -12.08035 -11.92414 -11.61288 -11.19400 -11.16396 -10.95912 -10.79078 -10.67706 -10.43947 -10.35424 -10.24193 -10.02639 -9.93364 -9.79094 -9.57964 -9.36149 -9.15641 -8.48850 -8.10914 -6.91089 -6.19712 -3.39107 2.43928 2.59801 3.01960 3.17143 3.44186 3.45361 3.62048 4.16428 4.22602 4.37945 4.42050 4.45461 4.72526 4.84640 4.91592 5.06087 5.08363 5.21514 5.26589 5.30646 5.39881 5.43178 5.47520 5.51935 5.55834 5.58305 5.59670 5.69269 5.78750 5.83847 5.90489 5.96758 6.00912 6.17271 6.20116 6.23894 6.32282 6.37335 6.52499 6.59174 6.64613 6.73467 6.80536 7.03180 7.06506 7.09889 7.61637 7.91162 7.99516 8.25684 8.45651 8.95030 9.67645 10.18251 11.05964 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.003801 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.959998 B = 7364.387513 C = 7542.419064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C 0.527 3.473 4 O -0.543 6.543 5 N -0.585 5.585 6 C 0.098 3.902 7 C 0.163 3.837 8 H 0.097 0.903 9 C -0.125 4.125 10 C -0.140 4.140 11 C -0.132 4.132 12 C 0.149 3.851 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.581 5.581 16 C -0.360 4.360 17 H 0.056 0.944 18 C -0.012 4.012 19 N -0.901 5.901 20 Si 1.059 2.941 21 H -0.292 1.292 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.097 4.097 25 C -0.136 4.136 26 C 0.520 3.480 27 O -0.562 6.562 28 N -0.714 5.714 29 C 0.103 3.897 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.273 0.727 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.402 0.598 49 H 0.103 0.897 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -10.881 8.067 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.098 4.098 3 C 0.314 3.686 4 O -0.421 6.421 5 N -0.317 5.317 6 C -0.025 4.025 7 C 0.056 3.944 8 H 0.115 0.885 9 C -0.164 4.164 10 C -0.178 4.178 11 C -0.171 4.171 12 C 0.041 3.959 13 H 0.099 0.901 14 C -0.050 4.050 15 N -0.303 5.303 16 C -0.489 4.489 17 H 0.074 0.926 18 C -0.217 4.217 19 N -0.540 5.540 20 Si 0.889 3.111 21 H -0.219 1.219 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.135 4.135 25 C -0.176 4.176 26 C 0.308 3.692 27 O -0.441 6.441 28 N -0.366 5.366 29 C -0.021 4.021 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.238 0.762 49 H 0.121 0.879 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.900 -9.521 8.224 13.171 hybrid contribution -0.162 -1.613 -0.156 1.628 sum -4.063 -11.133 8.068 14.337 Atomic orbital electron populations 1.22357 0.91962 1.03391 1.04439 1.21061 0.98149 0.93445 0.97185 1.19816 0.81057 0.86540 0.81147 1.90697 1.34710 1.78423 1.38242 1.48225 1.48122 1.10305 1.25040 1.22360 0.99938 0.79705 1.00515 1.21050 0.88626 0.99028 0.85710 0.88528 1.21885 0.98328 0.94887 1.01292 1.22159 0.98154 0.97150 1.00338 1.22143 0.98216 0.97489 0.99259 1.21290 0.94238 0.86765 0.93560 0.90056 1.23140 0.93763 0.99386 0.88755 1.44439 1.53455 1.00998 1.31365 1.19846 0.98480 1.06252 1.24280 0.92641 1.25825 0.95791 1.03057 0.97003 1.70783 1.09289 1.29817 1.44088 0.83613 0.74729 0.76236 0.76496 1.21937 1.21710 1.21809 1.21500 1.01058 0.93872 0.97116 1.21707 1.04154 0.96915 0.94817 1.20203 0.75371 0.87234 0.86400 1.90759 1.50984 1.15166 1.87189 1.45434 1.71227 1.09796 1.10120 1.22119 1.01817 0.80021 0.98177 0.89722 0.91432 0.91291 0.89867 0.91652 0.93453 0.91537 0.89913 0.94558 0.93720 0.92045 0.91110 0.89000 0.91436 0.90367 0.89432 0.87905 0.87827 0.76212 0.87932 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 7.36 37.16 0.27 -1.25 16 2 C -0.09 -1.03 0.49 -155.52 -0.08 -1.11 16 3 C 0.53 7.61 4.19 -10.98 -0.05 7.57 16 4 O -0.54 -9.51 15.34 5.55 0.09 -9.43 16 5 N -0.58 -8.84 1.66 -171.78 -0.29 -9.13 16 6 C 0.10 1.74 5.89 -3.49 -0.02 1.72 16 7 C 0.16 3.35 2.57 -67.11 -0.17 3.18 16 8 H 0.10 2.30 6.60 -51.93 -0.34 1.96 16 9 C -0.12 -2.43 5.41 -26.79 -0.14 -2.57 16 10 C -0.14 -2.33 4.48 -26.72 -0.12 -2.44 16 11 C -0.13 -2.10 5.09 -26.53 -0.13 -2.24 16 12 C 0.15 2.56 3.63 -66.84 -0.24 2.32 16 13 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 14 C 0.07 1.01 3.78 -3.18 -0.01 1.00 16 15 N -0.58 -12.42 2.31 -155.73 -0.36 -12.78 16 16 C -0.36 -8.96 9.51 -15.06 -0.14 -9.10 16 17 H 0.06 1.41 7.99 -52.49 -0.42 0.99 16 18 C -0.01 -0.31 4.59 -17.43 -0.08 -0.39 16 19 N -0.90 -24.85 12.57 55.49 0.70 -24.15 16 20 Si 1.06 23.54 30.01 -169.99 -5.10 18.44 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.10 -0.99 4.30 -26.55 -0.11 -1.11 16 25 C -0.14 -1.25 5.39 -28.13 -0.15 -1.40 16 26 C 0.52 6.01 6.89 -11.87 -0.08 5.93 16 27 O -0.56 -8.58 17.78 5.55 0.10 -8.48 16 28 N -0.71 -7.05 5.28 -61.38 -0.32 -7.37 16 29 C 0.10 1.05 4.09 -4.48 -0.02 1.03 16 30 H 0.08 0.79 4.39 -51.93 -0.23 0.56 16 31 H 0.07 0.57 6.00 -51.93 -0.31 0.26 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.50 6.98 -51.93 -0.36 1.13 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.46 6.17 -51.93 -0.32 1.14 16 37 H 0.08 1.30 1.53 -52.45 -0.08 1.22 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.57 5.98 -51.93 -0.31 0.25 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 42 H 0.09 1.01 2.40 -51.93 -0.12 0.88 16 43 H 0.27 7.52 5.57 -40.82 -0.23 7.29 16 44 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 45 H 0.09 0.90 7.99 -51.93 -0.41 0.48 16 46 H 0.10 0.80 7.07 -51.93 -0.37 0.44 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.40 3.56 8.80 -40.82 -0.36 3.20 16 49 H 0.10 1.01 3.06 -51.93 -0.16 0.85 16 50 H 0.08 0.87 6.92 -51.93 -0.36 0.51 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -30.44 344.38 -8.26 -38.70 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.97 Total: 7.87 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.29 Total: 1.13 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.27 Total: -53.43 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.18 Total: -17.90 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.10 Total: 18.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.44 -8.26 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039860603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.163 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds