Wall clock time and date at job start Tue Mar 31 2020 19:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.60140 * 2 1 4 4 O 1.21283 * 119.99791 * 125.76574 * 3 2 1 5 5 N 1.34776 * 119.99938 * 305.75895 * 3 2 1 6 6 C 1.46948 * 120.44209 * 176.20624 * 5 3 2 7 7 C 1.53587 * 108.52618 * 125.76770 * 6 5 3 8 8 H 1.09003 * 111.09201 * 172.47179 * 7 6 5 9 9 C 1.52863 * 108.54713 * 294.13204 * 7 6 5 10 10 C 1.53016 * 109.34694 * 60.59354 * 9 7 6 11 11 C 1.53011 * 109.79044 * 60.43802 * 10 9 7 12 12 C 1.53373 * 109.25315 * 299.41495 * 11 10 9 13 13 H 1.08990 * 110.59558 * 177.54743 * 12 11 10 14 14 C 1.47512 * 120.33934 * 355.94828 * 5 3 2 15 15 N 1.47567 * 107.97993 * 56.39184 * 12 11 10 16 16 C 1.36939 * 121.60945 * 122.25570 * 15 12 11 17 17 H 1.08002 * 120.00091 * 32.11423 * 16 15 12 18 18 C 1.38811 * 119.99923 * 212.11485 * 16 15 12 19 19 N 1.31622 * 120.00252 * 30.28203 * 18 16 15 20 20 Si 1.86799 * 119.99719 * 210.27688 * 18 16 15 21 21 H 1.48499 * 109.46871 * 90.00206 * 20 18 16 22 22 H 1.48503 * 109.47338 * 210.00030 * 20 18 16 23 23 H 1.48496 * 109.47393 * 330.00289 * 20 18 16 24 24 C 1.53342 * 109.60618 * 120.32895 * 2 1 3 25 25 C 1.53002 * 108.46487 * 52.55949 * 24 2 1 26 26 C 1.50182 * 110.00536 * 48.63487 * 25 24 2 27 27 O 1.21285 * 118.24334 * 162.55374 * 26 25 24 28 28 N 1.33347 * 123.50828 * 342.52920 * 26 25 24 29 29 C 1.45757 * 124.10567 * 2.24641 * 28 26 25 30 30 H 1.09003 * 109.47273 * 55.09534 * 1 2 3 31 31 H 1.09003 * 109.47276 * 175.10270 * 1 2 3 32 32 H 1.09003 * 109.46663 * 295.09728 * 1 2 3 33 33 H 1.09004 * 109.62770 * 6.05250 * 6 5 3 34 34 H 1.08999 * 109.62587 * 245.48182 * 6 5 3 35 35 H 1.09001 * 109.57173 * 300.57453 * 9 7 6 36 36 H 1.08993 * 109.40094 * 180.51260 * 9 7 6 37 37 H 1.09001 * 109.41539 * 300.34535 * 10 9 7 38 38 H 1.08998 * 109.41899 * 180.53979 * 10 9 7 39 39 H 1.08996 * 109.50767 * 179.47835 * 11 10 9 40 40 H 1.08998 * 109.54496 * 59.37294 * 11 10 9 41 41 H 1.08998 * 109.57250 * 114.53596 * 14 5 3 42 42 H 1.08998 * 109.75421 * 353.92249 * 14 5 3 43 43 H 0.97000 * 119.99700 * 6.58429 * 19 18 16 44 44 H 1.09007 * 109.67406 * 172.11989 * 24 2 1 45 45 H 1.09001 * 109.66956 * 292.64929 * 24 2 1 46 46 H 1.08997 * 109.25195 * 288.52725 * 25 24 2 47 47 H 1.08998 * 109.43932 * 168.85758 * 25 24 2 48 48 H 0.96999 * 117.94700 * 182.22455 * 28 26 25 49 49 H 1.09001 * 109.30364 * 220.58879 * 29 28 26 50 50 H 1.08998 * 109.13112 * 101.10742 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.8173 1.7850 0.8523 5 7 1.6191 2.2834 -0.9472 6 6 2.0401 3.6907 -0.9085 7 6 2.6771 4.0468 -2.2600 8 1 2.8850 5.1147 -2.3263 9 6 3.9660 3.2402 -2.4176 10 6 3.6362 1.7463 -2.3861 11 6 2.6879 1.4008 -3.5362 12 6 1.3890 2.2009 -3.3785 13 1 0.7138 2.0037 -4.2110 14 6 0.7391 1.8248 -2.0386 15 7 1.7401 3.6331 -3.3223 16 6 1.2257 4.5338 -4.2164 17 1 0.2338 4.3892 -4.6185 18 6 1.9792 5.6326 -4.6059 19 7 3.2923 5.5507 -4.6423 20 14 1.1293 7.2275 -5.0786 21 1 0.9677 8.0786 -3.8724 22 1 1.9507 7.9466 -6.0853 23 1 -0.2059 6.9254 -5.6537 24 6 2.0445 -0.7294 1.2468 25 6 1.3760 -2.1040 1.3145 26 6 1.4777 -2.7909 -0.0171 27 8 1.2959 -3.9893 -0.0601 28 7 1.7567 -2.1537 -1.1548 29 6 2.0430 -0.7273 -1.2435 30 1 -0.3634 0.5881 -0.8428 31 1 -0.3634 -1.0239 -0.0877 32 1 -0.3633 0.4359 0.9307 33 1 2.7695 3.8329 -0.1111 34 1 1.1731 4.3275 -0.7332 35 1 4.6484 3.4794 -1.6021 36 1 4.4348 3.4893 -3.3695 37 1 3.1595 1.5004 -1.4372 38 1 4.5556 1.1700 -2.4889 39 1 2.4635 0.3344 -3.5150 40 1 3.1588 1.6547 -4.4859 41 1 -0.2323 2.3118 -1.9536 42 1 0.6156 0.7433 -1.9825 43 1 3.7295 4.6983 -4.4902 44 1 3.1255 -0.8532 1.1797 45 1 1.7953 -0.1533 2.1379 46 1 0.3258 -1.9803 1.5788 47 1 1.8700 -2.7106 2.0735 48 1 1.7703 -2.6720 -1.9746 49 1 1.5558 -0.3164 -2.1278 50 1 3.1203 -0.5836 -1.3262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039860603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:53 Heat of formation + Delta-G solvation = -24.230250 kcal Electronic energy + Delta-G solvation = -32870.123402 eV Core-core repulsion = 28898.452060 eV Total energy + Delta-G solvation = -3971.671342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.06143 -41.16931 -39.56061 -37.84761 -35.95548 -34.68209 -34.31856 -33.80589 -32.54558 -31.38595 -28.64226 -27.98656 -27.15645 -26.05283 -25.26344 -23.83625 -23.06674 -22.95003 -21.32539 -20.48976 -19.64907 -18.51390 -18.33001 -17.85764 -17.12370 -17.08978 -16.43347 -16.33116 -16.21517 -15.83656 -15.55724 -15.47560 -15.45987 -15.01755 -14.75584 -14.60159 -14.25982 -14.09318 -14.01567 -13.62004 -13.51374 -13.31576 -13.08805 -12.96524 -12.77152 -12.55202 -12.43529 -12.31314 -12.02108 -11.97598 -11.92577 -11.87876 -11.72696 -11.63490 -11.28226 -11.08822 -10.84994 -10.67158 -10.36449 -10.11570 -9.57911 -8.67085 -8.14869 -5.34347 1.43855 1.57868 1.62223 1.66521 1.83904 1.86233 2.25911 2.67469 3.17970 3.19574 3.34277 3.40516 3.53366 3.61171 3.86457 3.97617 4.01515 4.04747 4.08945 4.11939 4.16713 4.28294 4.31914 4.39971 4.44287 4.51207 4.64755 4.67138 4.68556 4.75740 4.79789 4.80769 4.86941 4.89393 4.93147 4.99080 5.09518 5.10294 5.20603 5.24682 5.26778 5.33667 5.47719 5.58621 5.75520 5.97794 6.23284 6.39392 6.49257 7.04772 7.11141 7.15237 7.79595 8.33377 9.05641 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.003801 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.959998 B = 7364.387513 C = 7542.419064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C 0.528 3.472 4 O -0.572 6.572 5 N -0.586 5.586 6 C 0.110 3.890 7 C 0.165 3.835 8 H 0.054 0.946 9 C -0.121 4.121 10 C -0.135 4.135 11 C -0.124 4.124 12 C 0.140 3.860 13 H 0.083 0.917 14 C 0.084 3.916 15 N -0.596 5.596 16 C -0.354 4.354 17 H 0.051 0.949 18 C -0.062 4.062 19 N -0.936 5.936 20 Si 1.103 2.897 21 H -0.288 1.288 22 H -0.302 1.302 23 H -0.273 1.273 24 C -0.093 4.093 25 C -0.128 4.128 26 C 0.520 3.480 27 O -0.601 6.601 28 N -0.702 5.702 29 C 0.107 3.893 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.409 0.591 49 H 0.111 0.889 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -13.040 9.118 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.093 4.093 3 C 0.318 3.682 4 O -0.451 6.451 5 N -0.317 5.317 6 C -0.014 4.014 7 C 0.058 3.942 8 H 0.072 0.928 9 C -0.160 4.160 10 C -0.173 4.173 11 C -0.163 4.163 12 C 0.033 3.967 13 H 0.101 0.899 14 C -0.039 4.039 15 N -0.319 5.319 16 C -0.483 4.483 17 H 0.069 0.931 18 C -0.261 4.261 19 N -0.577 5.577 20 Si 0.930 3.070 21 H -0.215 1.215 22 H -0.229 1.229 23 H -0.198 1.198 24 C -0.131 4.131 25 C -0.168 4.168 26 C 0.308 3.692 27 O -0.483 6.483 28 N -0.354 5.354 29 C -0.017 4.017 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.246 0.754 49 H 0.128 0.872 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.910 -11.707 9.272 16.060 hybrid contribution 0.481 -0.962 -0.459 1.170 sum -5.429 -12.669 8.812 16.359 Atomic orbital electron populations 1.22376 0.90080 1.04489 1.05029 1.21062 0.99506 0.90699 0.98026 1.20430 0.80101 0.87601 0.80100 1.90697 1.35928 1.79224 1.39268 1.48223 1.48404 1.09263 1.25853 1.21985 0.99519 0.81657 0.98249 1.20864 0.89287 0.96871 0.87214 0.92774 1.21794 0.97663 0.97182 0.99352 1.22155 0.99016 0.94762 1.01326 1.22063 0.97031 0.99875 0.97353 1.21556 0.95018 0.84337 0.95749 0.89916 1.23159 0.93057 1.01615 0.86068 1.44567 1.53468 1.02764 1.31058 1.20035 0.98003 1.06827 1.23481 0.93089 1.26866 0.95773 1.05844 0.97621 1.70869 1.10328 1.29253 1.47237 0.83004 0.74520 0.73443 0.76044 1.21522 1.22921 1.19791 1.21464 1.00580 0.94353 0.96737 1.21709 1.05433 0.95872 0.93769 1.20575 0.74563 0.86748 0.87274 1.90756 1.52983 1.16872 1.87726 1.45329 1.70277 1.09497 1.10255 1.22046 1.01594 0.80135 0.97945 0.89533 0.89920 0.90521 0.90263 0.91836 0.93601 0.94836 0.88523 0.93621 0.89332 0.95016 0.90522 0.85270 0.92678 0.91348 0.89218 0.85867 0.86850 0.75413 0.87202 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.36 71.98 0.53 -1.73 16 2 C -0.09 -1.62 0.49 -52.84 -0.03 -1.64 16 3 C 0.53 13.89 4.19 87.66 0.37 14.26 16 4 O -0.57 -19.00 15.34 -3.04 -0.05 -19.05 16 5 N -0.59 -16.49 1.66 -815.79 -1.35 -17.85 16 6 C 0.11 3.89 5.89 86.49 0.51 4.40 16 7 C 0.17 6.99 2.57 44.94 0.12 7.11 16 8 H 0.05 2.74 6.60 -2.39 -0.02 2.73 16 9 C -0.12 -4.85 5.41 30.55 0.17 -4.69 16 10 C -0.13 -4.33 4.48 30.60 0.14 -4.19 16 11 C -0.12 -3.75 5.09 30.72 0.16 -3.60 16 12 C 0.14 4.57 3.63 45.11 0.16 4.73 16 13 H 0.08 2.70 8.01 -2.39 -0.02 2.68 16 14 C 0.08 2.05 3.78 86.39 0.33 2.38 16 15 N -0.60 -25.70 2.31 -646.60 -1.50 -27.19 16 16 C -0.35 -17.85 9.51 84.03 0.80 -17.05 16 17 H 0.05 2.58 7.99 -2.91 -0.02 2.56 16 18 C -0.06 -3.29 4.59 84.86 0.39 -2.90 16 19 N -0.94 -53.99 12.57 21.65 0.27 -53.72 16 20 Si 1.10 48.56 30.01 68.60 2.06 50.62 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 C -0.09 -1.59 4.30 30.71 0.13 -1.46 16 25 C -0.13 -1.88 5.39 29.69 0.16 -1.72 16 26 C 0.52 10.27 6.89 87.72 0.60 10.88 16 27 O -0.60 -16.86 17.78 -3.05 -0.05 -16.91 16 28 N -0.70 -11.25 5.28 -467.31 -2.47 -13.72 16 29 C 0.11 1.76 4.09 86.49 0.35 2.12 16 30 H 0.09 1.19 4.39 -2.39 -0.01 1.18 16 31 H 0.08 0.97 6.00 -2.39 -0.01 0.95 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 2.86 6.98 -2.38 -0.02 2.85 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.55 6.17 -2.39 -0.01 1.54 16 37 H 0.10 2.85 1.53 -3.42 -0.01 2.84 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.91 5.98 -2.39 -0.01 1.89 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.88 8.02 -2.39 -0.02 1.86 16 42 H 0.13 2.23 2.40 -2.39 -0.01 2.22 16 43 H 0.26 15.26 5.57 -92.71 -0.52 14.74 16 44 H 0.07 1.33 8.13 -2.38 -0.02 1.31 16 45 H 0.09 1.55 7.99 -2.39 -0.02 1.53 16 46 H 0.12 1.36 7.07 -2.39 -0.02 1.34 16 47 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.41 5.75 8.80 -92.71 -0.82 4.94 16 49 H 0.11 1.63 3.06 -2.39 -0.01 1.62 16 50 H 0.07 1.35 6.92 -2.39 -0.02 1.33 16 Total: -1.00 -69.08 344.38 2.23 -66.84 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.43 Total: 24.08 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.88 Total: 6.89 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.04 Total: -112.48 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.10 Total: -35.96 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.06 Total: 50.62 kcal Total: -69.08 2.23 -66.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039860603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.615 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds