Wall clock time and date at job start Tue Mar 31 2020 19:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.73410 * 2 1 4 4 O 1.21282 * 120.00313 * 112.42626 * 3 2 1 5 5 N 1.34780 * 119.99582 * 292.42002 * 3 2 1 6 6 C 1.46941 * 120.44549 * 5.69577 * 5 3 2 7 7 C 1.54062 * 108.30251 * 125.71772 * 6 5 3 8 8 H 1.09000 * 110.52366 * 172.86627 * 7 6 5 9 9 C 1.53369 * 108.83616 * 294.51430 * 7 6 5 10 10 C 1.53001 * 109.25453 * 60.25316 * 9 7 6 11 11 C 1.53004 * 109.79889 * 60.57961 * 10 9 7 12 12 C 1.53369 * 109.27961 * 299.44017 * 11 10 9 13 13 H 1.08996 * 110.59614 * 178.09519 * 12 11 10 14 14 C 1.46953 * 120.43573 * 185.96579 * 5 3 2 15 15 N 1.47563 * 107.98265 * 56.33643 * 12 11 10 16 16 C 1.36942 * 121.61216 * 122.28306 * 15 12 11 17 17 H 1.08001 * 119.99538 * 325.30582 * 16 15 12 18 18 C 1.38807 * 120.00327 * 145.30573 * 16 15 12 19 19 N 1.31621 * 119.99921 * 342.72400 * 18 16 15 20 20 Si 1.86796 * 120.00420 * 162.72406 * 18 16 15 21 21 H 1.48503 * 109.47112 * 59.99869 * 20 18 16 22 22 H 1.48501 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47193 * 300.00467 * 20 18 16 24 24 C 1.53347 * 109.60440 * 239.59141 * 2 1 3 25 25 C 1.53063 * 108.42351 * 172.71178 * 24 2 1 26 26 C 1.50180 * 109.89000 * 48.91850 * 25 24 2 27 27 O 1.21275 * 118.24893 * 162.37456 * 26 25 24 28 28 N 1.33350 * 123.50263 * 342.38100 * 26 25 24 29 29 C 1.45752 * 124.10858 * 2.25938 * 28 26 25 30 30 H 1.08998 * 109.46790 * 172.11859 * 1 2 3 31 31 H 1.08998 * 109.46976 * 292.11526 * 1 2 3 32 32 H 1.08997 * 109.47030 * 52.11421 * 1 2 3 33 33 H 1.08999 * 109.61917 * 245.48495 * 6 5 3 34 34 H 1.08997 * 109.62230 * 6.04199 * 6 5 3 35 35 H 1.09004 * 109.50538 * 300.31987 * 9 7 6 36 36 H 1.09001 * 109.54369 * 180.21179 * 9 7 6 37 37 H 1.08998 * 109.41870 * 300.47609 * 10 9 7 38 38 H 1.08997 * 109.41859 * 180.68095 * 10 9 7 39 39 H 1.09003 * 109.50186 * 179.50106 * 11 10 9 40 40 H 1.09001 * 109.54014 * 59.40341 * 11 10 9 41 41 H 1.08993 * 109.63245 * 353.96475 * 14 5 3 42 42 H 1.09006 * 109.62489 * 114.54867 * 14 5 3 43 43 H 0.97003 * 120.00594 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.67431 * 292.44780 * 24 2 1 45 45 H 1.09002 * 109.67220 * 52.97825 * 24 2 1 46 46 H 1.09009 * 109.39846 * 169.02636 * 25 24 2 47 47 H 1.08999 * 109.40586 * 288.77095 * 25 24 2 48 48 H 0.96998 * 117.94256 * 182.24957 * 28 26 25 49 49 H 1.09003 * 109.30041 * 220.59352 * 29 28 26 50 50 H 1.09004 * 109.30067 * 101.22633 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0389 1.4185 0.0000 4 8 2.6208 1.8541 0.9709 5 7 1.8474 2.2031 -1.0790 6 6 1.0373 1.7293 -2.2098 7 6 -0.0661 2.7690 -2.4837 8 1 -0.6110 2.5173 -3.3935 9 6 -1.0158 2.8119 -1.2802 10 6 -0.2291 3.2123 -0.0306 11 6 0.3858 4.5994 -0.2277 12 6 1.3408 4.5642 -1.4273 13 1 1.7660 5.5514 -1.6080 14 6 2.4508 3.5414 -1.1429 15 7 0.5813 4.0901 -2.6003 16 6 0.4821 4.8396 -3.7421 17 1 0.4339 5.9167 -3.6783 18 6 0.4435 4.2152 -4.9812 19 7 0.8363 2.9647 -5.1004 20 14 -0.1661 5.1496 -6.4794 21 1 0.6933 6.3397 -6.7040 22 1 -0.1082 4.2658 -7.6713 23 1 -1.5673 5.5865 -6.2540 24 6 2.0446 -0.7312 -1.2459 25 6 3.5638 -0.5583 -1.3153 26 6 4.1768 -0.8870 0.0157 27 8 5.3664 -1.1187 0.0583 28 7 3.4828 -0.9378 1.1533 29 6 2.0431 -0.7291 1.2424 30 1 -0.3633 -1.0180 -0.1409 31 1 -0.3633 0.3869 0.9521 32 1 -0.3633 0.6311 -0.8111 33 1 1.6684 1.6199 -3.0917 34 1 0.5845 0.7700 -1.9591 35 1 -1.4592 1.8273 -1.1312 36 1 -1.8041 3.5420 -1.4636 37 1 0.5642 2.4861 0.1464 38 1 -0.8992 3.2319 0.8288 39 1 0.9376 4.8835 0.6684 40 1 -0.4053 5.3259 -0.4135 41 1 2.9277 3.7739 -0.1908 42 1 3.1904 3.5718 -1.9431 43 1 0.8097 2.5284 -5.9664 44 1 1.7985 -1.7908 -1.1773 45 1 1.5855 -0.3044 -2.1376 46 1 3.9698 -1.2259 -2.0754 47 1 3.7993 0.4730 -1.5779 48 1 3.9666 -1.1257 1.9728 49 1 1.8195 -0.1336 2.1276 50 1 1.5435 -1.6943 1.3258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039860604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:59 Heat of formation + Delta-G solvation = -5.141487 kcal Electronic energy + Delta-G solvation = -33289.866886 eV Core-core repulsion = 29319.023295 eV Total energy + Delta-G solvation = -3970.843591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.70627 -39.70893 -37.91713 -36.35118 -34.40674 -33.30589 -32.88443 -31.96888 -31.13294 -30.31303 -27.02578 -26.36623 -25.88776 -24.21484 -24.08727 -22.53031 -21.51613 -21.41465 -20.33495 -18.61043 -18.28130 -17.16905 -16.57767 -16.35826 -15.86548 -15.49122 -15.36938 -14.99956 -14.69227 -14.20843 -14.05782 -13.84005 -13.71228 -13.53450 -13.32922 -13.01866 -12.84688 -12.65150 -12.52996 -12.37212 -12.17145 -12.00828 -11.88654 -11.56269 -11.34136 -11.11559 -11.01863 -10.86841 -10.79253 -10.59199 -10.42215 -10.20868 -10.16436 -10.14500 -9.65860 -9.58373 -9.54369 -9.10826 -8.97934 -8.65342 -7.83209 -6.60549 -5.96367 -3.41804 2.76262 2.90729 3.30077 3.36125 3.36907 3.37832 3.42492 4.33893 4.36713 4.47542 4.60431 4.71550 4.95536 5.09528 5.22186 5.25070 5.30817 5.43811 5.48778 5.56734 5.57755 5.65332 5.66798 5.71054 5.74077 5.81127 5.82689 5.93888 5.95519 6.01702 6.06787 6.20478 6.31418 6.35238 6.42715 6.48871 6.55576 6.60218 6.67534 6.81417 6.82488 6.97740 7.04204 7.11463 7.34536 7.38664 7.69973 7.94531 8.29870 8.31368 8.53090 9.04150 9.64306 10.30940 11.12218 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.004674 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.756416 B = 5988.843280 C = 6527.339016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C 0.521 3.479 4 O -0.552 6.552 5 N -0.583 5.583 6 C 0.077 3.923 7 C 0.183 3.817 8 H 0.100 0.900 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.121 4.121 12 C 0.154 3.846 13 H 0.077 0.923 14 C 0.100 3.900 15 N -0.575 5.575 16 C -0.255 4.255 17 H 0.062 0.938 18 C 0.014 3.986 19 N -0.897 5.897 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.130 4.130 25 C -0.139 4.139 26 C 0.524 3.476 27 O -0.566 6.566 28 N -0.709 5.709 29 C 0.136 3.864 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.398 0.602 49 H 0.085 0.915 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -8.187 8.856 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.100 4.100 3 C 0.309 3.691 4 O -0.431 6.431 5 N -0.314 5.314 6 C -0.045 4.045 7 C 0.075 3.925 8 H 0.118 0.882 9 C -0.177 4.177 10 C -0.177 4.177 11 C -0.161 4.161 12 C 0.047 3.953 13 H 0.095 0.905 14 C -0.024 4.024 15 N -0.296 5.296 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.540 5.540 20 Si 0.731 3.269 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.168 4.168 25 C -0.179 4.179 26 C 0.312 3.688 27 O -0.446 6.446 28 N -0.360 5.360 29 C 0.011 3.989 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.233 0.767 49 H 0.103 0.897 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.585 -8.091 8.955 12.343 hybrid contribution -0.297 0.503 -0.560 0.809 sum -2.882 -7.589 8.395 11.678 Atomic orbital electron populations 1.22388 0.91230 1.03864 1.04704 1.21118 0.98277 0.93636 0.96974 1.19927 0.79488 0.86702 0.82958 1.90673 1.43846 1.74898 1.33731 1.48148 1.49616 1.16035 1.17637 1.23176 0.95208 0.97666 0.88485 1.21006 0.90500 0.85385 0.95565 0.88174 1.22252 0.98988 0.99319 0.97114 1.22131 1.00166 0.99010 0.96442 1.21902 0.99245 0.97033 0.97874 1.21236 0.90384 0.95644 0.88081 0.90485 1.22239 0.96547 0.82389 1.01256 1.44232 1.55938 1.18159 1.11298 1.19021 1.45977 0.90255 0.83241 0.92035 1.25108 0.99318 0.96663 0.97463 1.69925 1.47974 1.12154 1.23917 0.86397 0.79071 0.79176 0.82214 1.20876 1.21639 1.21023 1.22221 0.94927 1.01249 0.98365 1.21671 0.96058 1.05269 0.94877 1.20133 0.86698 0.75623 0.86391 1.90724 1.15894 1.50628 1.87306 1.45247 1.09039 1.71895 1.09812 1.21222 0.80301 0.99377 0.98030 0.91133 0.91530 0.88504 0.88856 0.89959 0.93294 0.92629 0.89306 0.95005 0.93515 0.92793 0.90572 0.91683 0.93461 0.90195 0.87627 0.87777 0.87963 0.76680 0.89661 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.19 37.16 0.27 -1.42 16 2 C -0.10 -1.16 0.50 -155.52 -0.08 -1.24 16 3 C 0.52 8.29 2.43 -10.98 -0.03 8.26 16 4 O -0.55 -10.37 14.96 5.56 0.08 -10.28 16 5 N -0.58 -9.86 1.44 -171.95 -0.25 -10.10 16 6 C 0.08 1.32 3.80 -3.25 -0.01 1.31 16 7 C 0.18 3.56 2.61 -66.60 -0.17 3.39 16 8 H 0.10 2.22 6.52 -51.93 -0.34 1.88 16 9 C -0.14 -2.32 5.07 -26.54 -0.13 -2.45 16 10 C -0.14 -2.31 5.09 -26.73 -0.14 -2.45 16 11 C -0.12 -2.14 5.58 -26.54 -0.15 -2.29 16 12 C 0.15 2.99 3.61 -66.85 -0.24 2.75 16 13 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 14 C 0.10 1.86 5.89 -3.48 -0.02 1.84 16 15 N -0.58 -12.52 2.49 -155.15 -0.39 -12.90 16 16 C -0.26 -6.30 9.66 -15.06 -0.15 -6.44 16 17 H 0.06 1.54 7.89 -52.49 -0.41 1.13 16 18 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 19 N -0.90 -22.40 10.89 55.49 0.60 -21.80 16 20 Si 0.90 20.04 29.59 -169.99 -5.03 15.01 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.13 -1.49 4.48 -26.52 -0.12 -1.60 16 25 C -0.14 -1.91 5.50 -28.10 -0.15 -2.07 16 26 C 0.52 8.18 7.44 -11.87 -0.09 8.09 16 27 O -0.57 -10.94 17.78 5.56 0.10 -10.84 16 28 N -0.71 -9.13 5.15 -61.39 -0.32 -9.44 16 29 C 0.14 1.46 5.41 -4.49 -0.02 1.44 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.14 1.96 -51.93 -0.10 1.04 16 33 H 0.09 1.87 7.36 -51.93 -0.38 1.49 16 34 H 0.08 1.16 2.52 -51.93 -0.13 1.03 16 35 H 0.05 0.70 6.09 -51.93 -0.32 0.38 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.46 1.75 -52.42 -0.09 1.37 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.42 6.98 -51.93 -0.36 1.06 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 44 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.11 1.25 4.67 -51.93 -0.24 1.01 16 46 H 0.10 1.30 8.14 -51.92 -0.42 0.87 16 47 H 0.10 1.63 7.28 -51.93 -0.38 1.25 16 48 H 0.40 4.70 8.80 -40.82 -0.36 4.34 16 49 H 0.09 0.94 7.70 -51.93 -0.40 0.54 16 50 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -29.47 350.03 -8.53 -38.00 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.29 Total: 9.69 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.32 Total: 7.39 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.35 Total: -54.25 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.18 Total: -21.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.47 -8.53 -38.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039860604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.862 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds