Wall clock time and date at job start Tue Mar 31 2020 19:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.21411 * 2 1 4 4 O 1.21285 * 120.00219 * 97.13713 * 3 2 1 5 5 N 1.34773 * 120.00176 * 277.13029 * 3 2 1 6 6 C 1.47488 * 125.66435 * 174.62853 * 5 3 2 7 7 C 1.55027 * 104.90649 * 204.03633 * 6 5 3 8 8 C 1.54486 * 101.53150 * 323.65854 * 7 6 5 9 9 C 1.47193 * 125.66346 * 354.65894 * 5 3 2 10 10 C 1.52238 * 110.28481 * 276.20868 * 8 7 6 11 11 C 1.53171 * 109.65194 * 178.00595 * 10 8 7 12 12 C 1.53194 * 109.27377 * 60.17158 * 11 10 8 13 13 N 1.46935 * 108.92934 * 304.78305 * 12 11 10 14 14 C 1.36931 * 120.70421 * 234.18428 * 13 12 11 15 15 H 1.07999 * 120.00055 * 33.16117 * 14 13 12 16 16 C 1.38809 * 120.00032 * 213.16605 * 14 13 12 17 17 N 1.31617 * 120.00288 * 7.40395 * 16 14 13 18 18 Si 1.86808 * 119.99930 * 187.41089 * 16 14 13 19 19 H 1.48502 * 109.47034 * 89.99764 * 18 16 14 20 20 H 1.48500 * 109.46971 * 209.99699 * 18 16 14 21 21 H 1.48497 * 109.46928 * 329.99785 * 18 16 14 22 22 C 1.47078 * 118.59058 * 54.16176 * 13 12 11 23 23 C 1.54479 * 110.32114 * 121.97573 * 2 1 3 24 24 C 1.54623 * 101.76727 * 144.45546 * 23 2 1 25 25 C 1.51288 * 104.19460 * 335.20587 * 24 23 2 26 26 O 1.21284 * 124.93970 * 196.23004 * 25 24 23 27 27 N 1.34418 * 110.11389 * 16.25151 * 25 24 23 28 28 H 1.09007 * 109.47033 * 59.30035 * 1 2 3 29 29 H 1.08998 * 109.46847 * 179.30060 * 1 2 3 30 30 H 1.08999 * 109.47518 * 299.29968 * 1 2 3 31 31 H 1.09000 * 110.35097 * 322.89029 * 6 5 3 32 32 H 1.08995 * 110.35360 * 85.07319 * 6 5 3 33 33 H 1.09005 * 111.01394 * 81.71715 * 7 6 5 34 34 H 1.09001 * 111.01773 * 205.55477 * 7 6 5 35 35 H 1.09001 * 109.90308 * 297.80735 * 9 5 3 36 36 H 1.08996 * 109.90825 * 59.07500 * 9 5 3 37 37 H 1.08997 * 109.44410 * 298.06429 * 10 8 7 38 38 H 1.08998 * 109.44153 * 57.95588 * 10 8 7 39 39 H 1.08994 * 109.50620 * 180.11186 * 11 10 8 40 40 H 1.09006 * 109.50204 * 300.19548 * 11 10 8 41 41 H 1.09004 * 109.55913 * 64.61475 * 12 11 10 42 42 H 1.08999 * 109.56181 * 184.94922 * 12 11 10 43 43 H 0.97001 * 120.00269 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.57838 * 187.73961 * 22 13 12 45 45 H 1.08998 * 109.58324 * 67.34670 * 22 13 12 46 46 H 1.09000 * 110.97243 * 262.57477 * 23 2 1 47 47 H 1.09004 * 110.96986 * 26.33855 * 23 2 1 48 48 H 1.09001 * 110.49109 * 216.52785 * 24 23 2 49 49 H 1.09001 * 110.60068 * 93.93925 * 24 23 2 50 50 H 0.97002 * 124.34363 * 180.42954 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3827 1.9382 1.0422 5 7 2.1476 2.0966 -1.1581 6 6 2.5314 3.5144 -1.2912 7 6 1.9147 3.9698 -2.6386 8 6 2.0853 2.6996 -3.5013 9 6 1.8873 1.5509 -2.5001 10 6 3.4827 2.6544 -4.1035 11 6 3.6527 1.3662 -4.9145 12 6 2.6140 1.3365 -6.0401 13 7 1.2747 1.4956 -5.4571 14 6 0.2864 0.5840 -5.7167 15 1 0.5360 -0.4567 -5.8610 16 6 -1.0364 0.9977 -5.7945 17 7 -1.3275 2.2810 -5.7645 18 14 -2.4034 -0.2669 -5.9414 19 1 -2.8648 -0.6569 -4.5848 20 1 -3.5379 0.3167 -6.7014 21 1 -1.8942 -1.4656 -6.6547 22 6 1.0183 2.6544 -4.5884 23 6 2.0665 -0.7671 1.2288 24 6 3.3310 -1.4437 0.6508 25 6 3.0536 -1.5423 -0.8331 26 8 3.6597 -2.2522 -1.6074 27 7 2.0379 -0.7282 -1.1686 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3634 0.5029 0.8962 31 1 2.1179 4.0979 -0.4686 32 1 3.6166 3.6126 -1.3168 33 1 0.8611 4.2234 -2.5204 34 1 2.4710 4.8070 -3.0602 35 1 2.5893 0.7454 -2.7158 36 1 0.8639 1.1803 -2.5580 37 1 3.6245 3.5156 -4.7565 38 1 4.2233 2.6801 -3.3042 39 1 4.6545 1.3353 -5.3429 40 1 3.5088 0.5043 -4.2629 41 1 2.8078 2.1519 -6.7371 42 1 2.6724 0.3833 -6.5656 43 1 -2.2518 2.5700 -5.8185 44 1 0.0340 2.5567 -4.1302 45 1 1.0592 3.5697 -5.1788 46 1 2.3253 -0.0806 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4365 1.0810 49 1 4.2125 -0.8293 0.8342 50 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040380429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:57 Heat of formation + Delta-G solvation = -41.558802 kcal Electronic energy + Delta-G solvation = -32279.238092 eV Core-core repulsion = 28306.815328 eV Total energy + Delta-G solvation = -3972.422764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.33323 -39.63770 -38.42383 -36.42224 -35.81146 -33.13316 -32.00460 -31.18352 -30.83996 -30.05561 -29.04175 -25.96931 -25.39224 -25.04107 -23.71857 -22.26287 -21.65691 -20.80707 -20.38333 -19.55206 -18.35511 -17.31133 -16.83061 -16.68225 -16.07693 -15.72381 -15.18203 -14.88320 -14.52070 -14.16303 -14.10662 -13.85326 -13.73317 -13.47210 -13.33068 -13.05578 -13.02332 -12.79381 -12.66501 -12.46767 -12.31927 -12.26381 -11.94803 -11.76633 -11.31359 -11.28945 -11.16951 -11.00301 -10.94364 -10.75484 -10.51408 -10.40177 -10.29940 -10.22528 -9.92753 -9.81968 -9.59586 -9.49275 -8.96833 -8.59698 -8.46882 -6.67649 -5.88950 -3.38521 2.47927 2.57216 3.04481 3.28327 3.33172 3.37477 3.38575 4.12951 4.32729 4.39004 4.40296 4.65030 4.80944 4.92297 4.97524 5.13286 5.16555 5.33380 5.37847 5.41250 5.45372 5.54172 5.56343 5.57773 5.67400 5.72094 5.74601 5.83663 5.86914 5.93370 6.00040 6.04877 6.11890 6.23027 6.28004 6.35496 6.40847 6.56242 6.60174 6.70942 6.73349 6.82832 6.95720 6.98551 7.20390 7.52918 7.61468 7.71070 8.12379 8.22681 8.38507 9.13174 9.73163 10.33596 11.19094 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.005214 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.014882 B = 5368.896024 C = 6023.817558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C 0.527 3.473 4 O -0.545 6.545 5 N -0.606 5.606 6 C 0.108 3.892 7 C -0.123 4.123 8 C -0.091 4.091 9 C 0.112 3.888 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.144 3.856 13 N -0.591 5.591 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.009 3.991 17 N -0.904 5.904 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.190 3.810 23 C -0.114 4.114 24 C -0.158 4.158 25 C 0.519 3.481 26 O -0.529 6.529 27 N -0.721 5.721 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.053 0.947 43 H 0.255 0.745 44 H 0.090 0.910 45 H 0.024 0.976 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -0.394 11.973 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.055 3.945 3 C 0.313 3.687 4 O -0.423 6.423 5 N -0.338 5.338 6 C -0.015 4.015 7 C -0.162 4.162 8 C -0.093 4.093 9 C -0.010 4.010 10 C -0.132 4.132 11 C -0.177 4.177 12 C 0.018 3.982 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.064 3.936 23 C -0.152 4.152 24 C -0.198 4.198 25 C 0.306 3.694 26 O -0.405 6.405 27 N -0.382 5.382 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.042 0.958 46 H 0.126 0.874 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.099 -0.490 12.229 13.675 hybrid contribution -0.974 -0.408 -0.643 1.236 sum 5.125 -0.898 11.587 12.702 Atomic orbital electron populations 1.22072 0.90804 1.04083 1.04148 1.21145 0.96575 0.89167 0.87654 1.20346 0.78105 0.87650 0.82584 1.90668 1.50214 1.70262 1.31152 1.48656 1.66335 1.12137 1.06678 1.22267 0.99346 0.81398 0.98447 1.22782 1.01761 0.97923 0.93689 1.21862 0.98729 0.92380 0.96378 1.22426 1.01551 0.97389 0.79616 1.21287 0.95053 0.98450 0.98430 1.22087 0.98969 0.97307 0.99292 1.20937 0.85837 0.98782 0.92680 1.44007 1.07198 1.27355 1.52788 1.19165 0.86292 0.88943 1.43919 0.91788 1.25205 0.98254 0.95658 0.99927 1.69932 1.17951 1.12876 1.54029 0.86331 0.81971 0.80934 0.77784 1.21419 1.21631 1.20347 1.20681 0.95013 0.89594 0.88312 1.22657 0.96633 0.99600 0.96300 1.22402 1.00045 1.03919 0.93484 1.20886 0.79121 0.78435 0.90988 1.90770 1.51692 1.40621 1.57401 1.46863 1.36372 1.43337 1.11588 0.90776 0.90335 0.90260 0.90898 0.91816 0.90283 0.90086 0.90697 0.90563 0.92161 0.93607 0.93024 0.92403 0.96428 0.92826 0.93525 0.89185 0.95756 0.87401 0.88977 0.87738 0.87863 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.79 37.16 0.33 -1.35 16 2 C 0.15 1.78 0.89 -132.06 -0.12 1.66 16 3 C 0.53 7.77 6.82 -10.99 -0.07 7.69 16 4 O -0.55 -9.09 15.94 5.55 0.09 -9.00 16 5 N -0.61 -9.00 3.33 -170.68 -0.57 -9.57 16 6 C 0.11 1.48 6.57 -2.43 -0.02 1.47 16 7 C -0.12 -1.73 5.99 -24.88 -0.15 -1.87 16 8 C -0.09 -1.49 0.53 -154.09 -0.08 -1.57 16 9 C 0.11 1.79 3.95 -3.32 -0.01 1.77 16 10 C -0.09 -1.47 4.59 -27.03 -0.12 -1.60 16 11 C -0.14 -2.30 5.90 -26.54 -0.16 -2.46 16 12 C 0.14 2.85 6.49 -3.70 -0.02 2.82 16 13 N -0.59 -13.35 2.86 -172.67 -0.49 -13.84 16 14 C -0.25 -6.37 9.58 -15.06 -0.14 -6.52 16 15 H 0.06 1.62 7.84 -52.49 -0.41 1.21 16 16 C 0.01 0.22 5.11 -17.43 -0.09 0.13 16 17 N -0.90 -24.27 11.03 55.49 0.61 -23.66 16 18 Si 0.90 20.49 29.56 -169.99 -5.02 15.46 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.19 3.98 3.78 -4.04 -0.02 3.97 16 23 C -0.11 -1.13 6.14 -25.10 -0.15 -1.28 16 24 C -0.16 -1.70 6.85 -26.74 -0.18 -1.88 16 25 C 0.52 7.59 8.43 -10.86 -0.09 7.50 16 26 O -0.53 -9.82 18.03 5.55 0.10 -9.72 16 27 N -0.72 -9.89 3.91 -47.68 -0.19 -10.07 16 28 H 0.07 0.93 7.30 -51.92 -0.38 0.55 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.06 0.85 7.78 -51.93 -0.40 0.44 16 33 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 34 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 35 H 0.08 1.26 4.23 -51.93 -0.22 1.04 16 36 H 0.08 1.33 6.45 -51.93 -0.33 1.00 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.67 7.52 -51.93 -0.39 0.28 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.09 2.13 6.02 -51.93 -0.31 1.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.11 1.11 6.88 -51.93 -0.36 0.75 16 47 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 48 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.42 6.31 6.28 -40.82 -0.26 6.05 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -29.87 376.46 -8.90 -38.77 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.99 Total: 7.48 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -1.11 Total: 8.48 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.64 Total: -57.15 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.19 Total: -18.72 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.87 -8.90 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040380429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.788 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds