Wall clock time and date at job start Tue Mar 31 2020 19:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.21411 * 2 1 4 4 O 1.21285 * 120.00219 * 97.13713 * 3 2 1 5 5 N 1.34773 * 120.00176 * 277.13029 * 3 2 1 6 6 C 1.47488 * 125.66435 * 174.62853 * 5 3 2 7 7 C 1.55027 * 104.90649 * 204.03633 * 6 5 3 8 8 C 1.54486 * 101.53150 * 323.65854 * 7 6 5 9 9 C 1.47193 * 125.66346 * 354.65894 * 5 3 2 10 10 C 1.52238 * 110.28481 * 276.20868 * 8 7 6 11 11 C 1.53171 * 109.65194 * 178.00595 * 10 8 7 12 12 C 1.53194 * 109.27377 * 60.17158 * 11 10 8 13 13 N 1.46935 * 108.92934 * 304.78305 * 12 11 10 14 14 C 1.36931 * 120.70421 * 234.18428 * 13 12 11 15 15 H 1.07999 * 120.00055 * 33.16117 * 14 13 12 16 16 C 1.38809 * 120.00032 * 213.16605 * 14 13 12 17 17 N 1.31617 * 120.00288 * 7.40395 * 16 14 13 18 18 Si 1.86808 * 119.99930 * 187.41089 * 16 14 13 19 19 H 1.48502 * 109.47034 * 89.99764 * 18 16 14 20 20 H 1.48500 * 109.46971 * 209.99699 * 18 16 14 21 21 H 1.48497 * 109.46928 * 329.99785 * 18 16 14 22 22 C 1.47078 * 118.59058 * 54.16176 * 13 12 11 23 23 C 1.54479 * 110.32114 * 121.97573 * 2 1 3 24 24 C 1.54623 * 101.76727 * 144.45546 * 23 2 1 25 25 C 1.51288 * 104.19460 * 335.20587 * 24 23 2 26 26 O 1.21284 * 124.93970 * 196.23004 * 25 24 23 27 27 N 1.34418 * 110.11389 * 16.25151 * 25 24 23 28 28 H 1.09007 * 109.47033 * 59.30035 * 1 2 3 29 29 H 1.08998 * 109.46847 * 179.30060 * 1 2 3 30 30 H 1.08999 * 109.47518 * 299.29968 * 1 2 3 31 31 H 1.09000 * 110.35097 * 322.89029 * 6 5 3 32 32 H 1.08995 * 110.35360 * 85.07319 * 6 5 3 33 33 H 1.09005 * 111.01394 * 81.71715 * 7 6 5 34 34 H 1.09001 * 111.01773 * 205.55477 * 7 6 5 35 35 H 1.09001 * 109.90308 * 297.80735 * 9 5 3 36 36 H 1.08996 * 109.90825 * 59.07500 * 9 5 3 37 37 H 1.08997 * 109.44410 * 298.06429 * 10 8 7 38 38 H 1.08998 * 109.44153 * 57.95588 * 10 8 7 39 39 H 1.08994 * 109.50620 * 180.11186 * 11 10 8 40 40 H 1.09006 * 109.50204 * 300.19548 * 11 10 8 41 41 H 1.09004 * 109.55913 * 64.61475 * 12 11 10 42 42 H 1.08999 * 109.56181 * 184.94922 * 12 11 10 43 43 H 0.97001 * 120.00269 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.57838 * 187.73961 * 22 13 12 45 45 H 1.08998 * 109.58324 * 67.34670 * 22 13 12 46 46 H 1.09000 * 110.97243 * 262.57477 * 23 2 1 47 47 H 1.09004 * 110.96986 * 26.33855 * 23 2 1 48 48 H 1.09001 * 110.49109 * 216.52785 * 24 23 2 49 49 H 1.09001 * 110.60068 * 93.93925 * 24 23 2 50 50 H 0.97002 * 124.34363 * 180.42954 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3827 1.9382 1.0422 5 7 2.1476 2.0966 -1.1581 6 6 2.5314 3.5144 -1.2912 7 6 1.9147 3.9698 -2.6386 8 6 2.0853 2.6996 -3.5013 9 6 1.8873 1.5509 -2.5001 10 6 3.4827 2.6544 -4.1035 11 6 3.6527 1.3662 -4.9145 12 6 2.6140 1.3365 -6.0401 13 7 1.2747 1.4956 -5.4571 14 6 0.2864 0.5840 -5.7167 15 1 0.5360 -0.4567 -5.8610 16 6 -1.0364 0.9977 -5.7945 17 7 -1.3275 2.2810 -5.7645 18 14 -2.4034 -0.2669 -5.9414 19 1 -2.8648 -0.6569 -4.5848 20 1 -3.5379 0.3167 -6.7014 21 1 -1.8942 -1.4656 -6.6547 22 6 1.0183 2.6544 -4.5884 23 6 2.0665 -0.7671 1.2288 24 6 3.3310 -1.4437 0.6508 25 6 3.0536 -1.5423 -0.8331 26 8 3.6597 -2.2522 -1.6074 27 7 2.0379 -0.7282 -1.1686 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3634 0.5029 0.8962 31 1 2.1179 4.0979 -0.4686 32 1 3.6166 3.6126 -1.3168 33 1 0.8611 4.2234 -2.5204 34 1 2.4710 4.8070 -3.0602 35 1 2.5893 0.7454 -2.7158 36 1 0.8639 1.1803 -2.5580 37 1 3.6245 3.5156 -4.7565 38 1 4.2233 2.6801 -3.3042 39 1 4.6545 1.3353 -5.3429 40 1 3.5088 0.5043 -4.2629 41 1 2.8078 2.1519 -6.7371 42 1 2.6724 0.3833 -6.5656 43 1 -2.2518 2.5700 -5.8185 44 1 0.0340 2.5567 -4.1302 45 1 1.0592 3.5697 -5.1788 46 1 2.3253 -0.0806 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4365 1.0810 49 1 4.2125 -0.8293 0.8342 50 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040380429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:56 Heat of formation + Delta-G solvation = -59.861554 kcal Electronic energy + Delta-G solvation = -32280.031759 eV Core-core repulsion = 28306.815328 eV Total energy + Delta-G solvation = -3973.216431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.45401 -40.90442 -39.71008 -37.62726 -37.27069 -34.81453 -33.26768 -32.27563 -31.92384 -31.75562 -30.29295 -27.43654 -27.07742 -26.04282 -24.87232 -23.90565 -22.82876 -21.98041 -21.66621 -20.69819 -19.81920 -18.60878 -18.38659 -17.89558 -17.30422 -17.02853 -16.60788 -16.28622 -15.78044 -15.63421 -15.31991 -15.24898 -14.98165 -14.83591 -14.55180 -14.40044 -14.34014 -14.12620 -13.75890 -13.56833 -13.47923 -13.34922 -13.27713 -13.01456 -12.84008 -12.80071 -12.63828 -12.24176 -12.20193 -12.12187 -12.05372 -11.94183 -11.89001 -11.49652 -11.44979 -11.09675 -11.02714 -10.98932 -10.54634 -10.12114 -9.71002 -8.55291 -7.85353 -5.36719 1.32334 1.44515 1.44849 1.48552 1.55515 1.90828 2.24920 2.50105 3.17927 3.25189 3.29983 3.44517 3.50589 3.70574 3.78502 3.83302 3.90511 4.05804 4.20607 4.25050 4.30130 4.33410 4.47413 4.52473 4.56602 4.60382 4.67205 4.73350 4.77146 4.81283 4.89063 4.96737 4.98273 5.03282 5.05796 5.08300 5.12700 5.14239 5.19679 5.32340 5.33319 5.44419 5.57270 5.60601 5.67837 5.78053 5.86867 6.40253 6.44703 6.94836 7.08025 7.19664 7.87276 8.42185 9.19804 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.005214 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.014882 B = 5368.896024 C = 6023.817558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 C 0.524 3.476 4 O -0.562 6.562 5 N -0.609 5.609 6 C 0.109 3.891 7 C -0.114 4.114 8 C -0.087 4.087 9 C 0.129 3.871 10 C -0.089 4.089 11 C -0.127 4.127 12 C 0.141 3.859 13 N -0.605 5.605 14 C -0.256 4.256 15 H 0.059 0.941 16 C -0.036 4.036 17 N -0.930 5.930 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.204 3.796 23 C -0.103 4.103 24 C -0.149 4.149 25 C 0.512 3.488 26 O -0.576 6.576 27 N -0.720 5.720 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.046 0.954 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.000 1.000 46 H 0.110 0.890 47 H 0.121 0.879 48 H 0.129 0.871 49 H 0.107 0.893 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -0.689 13.895 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 C 0.311 3.689 4 O -0.441 6.441 5 N -0.341 5.341 6 C -0.013 4.013 7 C -0.153 4.153 8 C -0.090 4.090 9 C 0.007 3.993 10 C -0.127 4.127 11 C -0.166 4.166 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.387 4.387 15 H 0.076 0.924 16 C -0.232 4.232 17 N -0.575 5.575 18 Si 0.784 3.216 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.201 1.201 22 C 0.078 3.922 23 C -0.141 4.141 24 C -0.189 4.189 25 C 0.301 3.699 26 O -0.456 6.456 27 N -0.378 5.378 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.018 0.982 46 H 0.129 0.871 47 H 0.139 0.861 48 H 0.147 0.853 49 H 0.125 0.875 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.058 -0.772 14.181 15.859 hybrid contribution -1.264 -0.288 -1.296 1.833 sum 5.794 -1.059 12.884 14.167 Atomic orbital electron populations 1.22076 0.89794 1.05040 1.03827 1.21350 0.97293 0.87930 0.88170 1.20790 0.77523 0.88479 0.82077 1.90659 1.50976 1.70946 1.31500 1.48720 1.66395 1.12688 1.06305 1.22336 1.00024 0.80782 0.98142 1.22738 1.01698 0.97363 0.93491 1.21668 0.97867 0.94093 0.95348 1.22091 1.00103 0.96877 0.80266 1.21258 0.94508 0.98001 0.98883 1.21957 0.98997 0.97571 0.98056 1.21036 0.85366 0.98269 0.93809 1.44212 1.07797 1.27222 1.53623 1.19347 0.87147 0.89278 1.42916 0.92354 1.25772 1.00008 0.97016 1.00435 1.70080 1.17769 1.14242 1.55451 0.85462 0.79387 0.79036 0.77733 1.20755 1.22348 1.20060 1.20385 0.95141 0.87895 0.88736 1.22729 0.96687 0.99810 0.94875 1.22429 1.00537 1.05555 0.90347 1.21574 0.78424 0.77498 0.92446 1.90738 1.53220 1.42590 1.59020 1.46978 1.36151 1.43049 1.11658 0.92937 0.88699 0.88756 0.90325 0.90562 0.91292 0.87943 0.91329 0.92645 0.91385 0.91622 0.90561 0.93529 0.96626 0.93526 0.94111 0.92304 0.98191 0.87125 0.86070 0.85284 0.87463 0.74658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.79 71.98 0.63 -2.42 16 2 C 0.14 3.26 0.89 3.31 0.00 3.26 16 3 C 0.52 14.64 6.82 87.66 0.60 15.23 16 4 O -0.56 -17.58 15.94 -3.05 -0.05 -17.62 16 5 N -0.61 -17.43 3.33 -812.28 -2.71 -20.14 16 6 C 0.11 2.79 6.57 86.88 0.57 3.36 16 7 C -0.11 -3.08 5.99 31.79 0.19 -2.89 16 8 C -0.09 -2.83 0.53 -51.91 -0.03 -2.86 16 9 C 0.13 4.11 3.95 86.47 0.34 4.45 16 10 C -0.09 -2.61 4.59 30.40 0.14 -2.47 16 11 C -0.13 -4.09 5.90 30.72 0.18 -3.91 16 12 C 0.14 5.58 6.49 86.36 0.56 6.14 16 13 N -0.61 -27.99 2.86 -700.21 -2.00 -29.99 16 14 C -0.26 -13.22 9.58 84.03 0.80 -12.41 16 15 H 0.06 3.02 7.84 -2.91 -0.02 3.00 16 16 C -0.04 -1.90 5.11 84.86 0.43 -1.46 16 17 N -0.93 -51.48 11.03 21.65 0.24 -51.24 16 18 Si 0.95 42.86 29.56 68.60 2.03 44.89 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 C 0.20 8.79 3.78 86.07 0.33 9.11 16 23 C -0.10 -1.73 6.14 31.65 0.19 -1.53 16 24 C -0.15 -2.81 6.85 30.59 0.21 -2.60 16 25 C 0.51 14.48 8.43 87.90 0.74 15.22 16 26 O -0.58 -21.37 18.03 -3.04 -0.05 -21.43 16 27 N -0.72 -19.31 3.91 -423.36 -1.65 -20.96 16 28 H 0.05 1.31 7.30 -2.38 -0.02 1.29 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 32 H 0.08 1.80 7.78 -2.39 -0.02 1.78 16 33 H 0.07 2.00 8.02 -2.38 -0.02 1.99 16 34 H 0.10 2.33 8.01 -2.39 -0.02 2.31 16 35 H 0.07 2.30 4.23 -2.39 -0.01 2.29 16 36 H 0.06 2.01 6.45 -2.39 -0.02 1.99 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.72 7.52 -2.39 -0.02 1.70 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.62 6.34 -2.38 -0.02 1.61 16 41 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.05 1.87 7.93 -2.39 -0.02 1.86 16 43 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 44 H 0.06 2.90 6.02 -2.38 -0.01 2.89 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.11 1.90 6.88 -2.39 -0.02 1.88 16 47 H 0.12 1.36 7.92 -2.38 -0.02 1.34 16 48 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.41 12.52 6.28 -92.71 -0.58 11.94 16 Total: -1.00 -65.97 376.46 2.07 -63.90 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.37 Total: 28.36 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 5.90 Total: 24.23 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -6.13 Total: -122.33 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.10 Total: -39.05 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -65.97 2.07 -63.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040380429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.043 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds