Wall clock time and date at job start Tue Mar 31 2020 19:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.67460 * 2 1 4 4 O 1.21280 * 120.00455 * 123.94161 * 3 2 1 5 5 N 1.34785 * 119.99351 * 303.94325 * 3 2 1 6 6 C 1.47151 * 125.60089 * 5.50822 * 5 3 2 7 7 C 1.54628 * 107.33985 * 180.88047 * 6 5 3 8 8 C 1.53470 * 102.74704 * 20.65806 * 7 6 5 9 9 C 1.53503 * 111.82164 * 87.16342 * 8 7 6 10 10 C 1.55215 * 101.39087 * 155.70616 * 9 8 7 11 11 N 1.47582 * 105.02406 * 324.66477 * 10 9 8 12 12 C 1.36941 * 125.67339 * 203.86653 * 11 10 9 13 13 H 1.07995 * 119.99367 * 179.97438 * 12 11 10 14 14 C 1.38814 * 120.00033 * 359.96185 * 12 11 10 15 15 N 1.31621 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99674 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47489 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46902 * 120.00253 * 16 14 12 19 19 H 1.48498 * 109.47139 * 239.99965 * 16 14 12 20 20 C 1.47448 * 108.64780 * 23.83365 * 11 10 9 21 21 C 1.47751 * 125.59295 * 185.20171 * 5 3 2 22 22 C 1.53343 * 109.67321 * 239.45886 * 2 1 3 23 23 C 1.52912 * 108.68689 * 172.74987 * 22 2 1 24 24 N 1.45751 * 110.49570 * 50.72512 * 23 22 2 25 25 C 1.33351 * 124.10439 * 340.96626 * 24 23 22 26 26 O 1.21282 * 118.24625 * 182.17981 * 25 24 23 27 27 C 1.50174 * 123.51178 * 2.19367 * 25 24 23 28 28 H 1.09001 * 109.46560 * 313.95774 * 1 2 3 29 29 H 1.08993 * 109.47338 * 193.95942 * 1 2 3 30 30 H 1.08994 * 109.46896 * 73.95366 * 1 2 3 31 31 H 1.08995 * 109.87337 * 300.32308 * 6 5 3 32 32 H 1.09004 * 109.87157 * 61.44823 * 6 5 3 33 33 H 1.09006 * 110.75840 * 138.96911 * 7 6 5 34 34 H 1.08996 * 110.76209 * 262.16284 * 7 6 5 35 35 H 1.09004 * 111.03919 * 273.72872 * 9 8 7 36 36 H 1.08993 * 111.04033 * 37.67505 * 9 8 7 37 37 H 1.09003 * 110.32549 * 205.78424 * 10 9 8 38 38 H 1.08998 * 110.33181 * 83.55207 * 10 9 8 39 39 H 0.96995 * 120.00089 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.99422 * 238.44368 * 20 11 10 41 41 H 1.09003 * 110.02759 * 117.13040 * 20 11 10 42 42 H 1.09003 * 110.39574 * 276.48596 * 21 5 3 43 43 H 1.09000 * 110.40329 * 38.89190 * 21 5 3 44 44 H 1.08994 * 109.60580 * 292.49439 * 22 2 1 45 45 H 1.09004 * 109.60058 * 52.98623 * 22 2 1 46 46 H 1.09006 * 109.28168 * 290.42136 * 23 22 2 47 47 H 1.08995 * 109.14481 * 170.94379 * 23 22 2 48 48 H 0.97000 * 117.94840 * 160.94250 * 24 23 22 49 49 H 1.09001 * 109.40839 * 222.28781 * 27 25 24 50 50 H 1.09000 * 109.40297 * 102.54857 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7938 1.7927 0.8713 5 7 1.6505 2.2729 -0.9684 6 6 0.6546 1.9884 -2.0137 7 6 0.5532 3.2456 -2.9081 8 6 1.8768 3.9695 -2.6261 9 6 3.0035 3.4769 -3.5449 10 6 3.9587 4.7003 -3.5416 11 7 3.0715 5.8782 -3.4829 12 6 3.3899 7.1399 -3.9095 13 1 2.6670 7.9376 -3.8231 14 6 4.6419 7.3936 -4.4526 15 7 5.5232 6.4216 -4.5572 16 14 5.0760 9.1145 -5.0351 17 1 3.9205 10.0197 -4.8095 18 1 6.2511 9.6124 -4.2759 19 1 5.4012 9.0795 -6.4836 20 6 1.7849 5.4703 -2.8893 21 6 2.1521 3.6507 -1.1509 22 6 2.0463 -0.7337 -1.2436 23 6 3.5643 -0.5649 -1.3172 24 7 4.1795 -0.9199 -0.0445 25 6 3.5210 -0.9790 1.1136 26 8 4.1473 -1.2472 2.1170 27 6 2.0454 -0.7314 1.2420 28 1 -0.3632 0.7134 0.7398 29 1 -0.3633 -0.9972 0.2479 30 1 -0.3633 0.2841 -0.9876 31 1 0.9767 1.1346 -2.6097 32 1 -0.3128 1.7799 -1.5568 33 1 0.4817 2.9670 -3.9595 34 1 -0.2970 3.8612 -2.6145 35 1 3.4930 2.5972 -3.1269 36 1 2.6298 3.2749 -4.5487 37 1 4.5531 4.7191 -4.4552 38 1 4.6081 4.6714 -2.6667 39 1 6.3979 6.5988 -4.9371 40 1 0.9713 5.6778 -3.5843 41 1 1.6201 6.0034 -1.9529 42 1 1.6112 4.3408 -0.5034 43 1 3.2218 3.6958 -0.9463 44 1 1.7995 -1.7930 -1.1720 45 1 1.5873 -0.3083 -2.1361 46 1 3.8000 0.4726 -1.5543 47 1 3.9583 -1.2120 -2.1007 48 1 5.1273 -1.1264 -0.0396 49 1 1.8558 -0.1222 2.1257 50 1 1.5258 -1.6843 1.3426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041409355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:46 Heat of formation + Delta-G solvation = -35.036763 kcal Electronic energy + Delta-G solvation = -31299.165886 eV Core-core repulsion = 27327.025938 eV Total energy + Delta-G solvation = -3972.139948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46364 -39.82596 -38.43312 -36.55373 -35.78911 -34.37361 -32.67841 -30.69017 -29.94747 -29.32464 -28.66040 -27.96518 -25.94920 -24.54984 -23.98894 -22.90857 -21.94777 -20.52687 -20.23749 -19.04319 -18.48059 -17.40075 -16.85677 -16.65506 -16.22634 -16.13357 -15.61191 -15.07390 -14.89776 -14.69357 -14.45663 -14.14438 -13.88105 -13.63635 -13.48209 -13.35777 -13.00530 -12.85412 -12.61272 -12.51493 -12.19204 -12.10904 -11.96456 -11.86751 -11.80893 -11.44205 -11.35730 -11.17131 -11.01563 -10.92017 -10.81876 -10.31457 -10.07760 -9.98023 -9.85541 -9.79768 -9.71683 -9.52244 -9.17657 -8.68067 -8.59028 -6.87041 -5.68317 -3.09861 2.55751 2.64029 2.89540 3.19904 3.38073 3.43722 3.46164 4.02754 4.13731 4.24260 4.45515 4.46761 4.51925 4.58661 4.78674 4.89766 4.94291 5.01013 5.08580 5.15276 5.23356 5.27279 5.33261 5.35505 5.39170 5.47226 5.54502 5.61963 5.68208 5.72162 5.76995 5.86329 5.89013 5.93969 6.03025 6.12997 6.22649 6.31080 6.48867 6.55183 6.66853 6.69334 6.77455 7.24170 7.47507 7.51678 7.59457 7.81618 8.12130 8.16893 8.31873 9.18700 9.79481 10.44022 11.35826 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.003109 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.279109 B = 9005.309431 C = 9652.288672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C 0.534 3.466 4 O -0.530 6.530 5 N -0.611 5.611 6 C 0.093 3.907 7 C -0.118 4.118 8 C -0.080 4.080 9 C -0.128 4.128 10 C 0.153 3.847 11 N -0.604 5.604 12 C -0.223 4.223 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.921 5.921 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.151 3.849 21 C 0.127 3.873 22 C -0.128 4.128 23 C 0.104 3.896 24 N -0.718 5.718 25 C 0.533 3.467 26 O -0.560 6.560 27 C -0.111 4.111 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.011 0.989 39 H 0.251 0.749 40 H 0.030 0.970 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.400 0.600 49 H 0.108 0.892 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 -17.651 2.871 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C 0.321 3.679 4 O -0.406 6.406 5 N -0.345 5.345 6 C -0.030 4.030 7 C -0.156 4.156 8 C -0.081 4.081 9 C -0.166 4.166 10 C 0.029 3.971 11 N -0.330 5.330 12 C -0.351 4.351 13 H 0.096 0.904 14 C -0.206 4.206 15 N -0.570 5.570 16 Si 0.744 3.256 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.025 3.975 21 C 0.005 3.995 22 C -0.166 4.166 23 C -0.020 4.020 24 N -0.370 5.370 25 C 0.321 3.679 26 O -0.438 6.438 27 C -0.151 4.151 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.235 0.765 49 H 0.126 0.874 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.582 -17.449 3.836 21.852 hybrid contribution 0.583 0.955 -0.402 1.189 sum -11.998 -16.495 3.434 20.684 Atomic orbital electron populations 1.22114 0.91655 1.03303 1.03740 1.20909 0.97991 0.92750 0.96844 1.19955 0.80964 0.86265 0.80707 1.90772 1.36005 1.77866 1.35966 1.48565 1.41930 1.14905 1.29124 1.22526 0.91976 0.98959 0.89527 1.22505 0.98031 0.95277 0.99837 1.21583 0.95245 0.97299 0.94020 1.22800 0.96742 0.99530 0.97552 1.21987 0.90919 0.81839 1.02394 1.44639 1.10153 1.06635 1.71601 1.19115 0.98020 0.85032 1.32916 0.90430 1.24779 0.96271 0.97930 1.01624 1.69807 1.06406 1.29864 1.50939 0.86011 0.78042 0.83415 0.78100 1.20529 1.21753 1.21760 1.20998 0.90554 0.89848 0.96090 1.22121 1.00604 0.81190 0.95552 1.22095 0.95054 1.01688 0.97757 1.21415 0.93343 1.01637 0.85615 1.45342 1.13436 1.70540 1.07643 1.19873 0.90220 0.75273 0.82573 1.90740 1.68298 1.49595 1.35207 1.21573 0.92309 1.02203 0.99017 0.91651 0.91088 0.90397 0.91155 0.90851 0.89756 0.90559 0.92578 0.91792 0.87716 0.97098 0.93787 0.95224 0.95845 0.91522 0.90083 0.89572 0.88592 0.91303 0.89883 0.76489 0.87359 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 7.78 37.16 0.29 -0.64 16 2 C -0.08 -0.73 0.50 -155.44 -0.08 -0.81 16 3 C 0.53 7.06 4.92 -10.98 -0.05 7.01 16 4 O -0.53 -9.56 15.48 5.56 0.09 -9.48 16 5 N -0.61 -7.54 3.33 -170.88 -0.57 -8.11 16 6 C 0.09 0.82 5.06 -2.83 -0.01 0.80 16 7 C -0.12 -1.27 5.84 -25.63 -0.15 -1.42 16 8 C -0.08 -1.22 0.61 -153.97 -0.09 -1.32 16 9 C -0.13 -2.17 5.99 -25.30 -0.15 -2.32 16 10 C 0.15 3.57 5.83 -2.28 -0.01 3.56 16 11 N -0.60 -14.86 3.41 -170.43 -0.58 -15.44 16 12 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 13 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 14 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 15 N -0.92 -26.49 10.10 55.49 0.56 -25.93 16 16 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.15 2.92 6.51 -3.70 -0.02 2.89 16 21 C 0.13 1.97 5.76 -3.14 -0.02 1.95 16 22 C -0.13 -0.88 4.74 -26.60 -0.13 -1.01 16 23 C 0.10 0.92 6.60 -4.49 -0.03 0.89 16 24 N -0.72 -8.11 5.44 -61.40 -0.33 -8.45 16 25 C 0.53 7.33 6.70 -11.87 -0.08 7.25 16 26 O -0.56 -10.05 17.78 5.56 0.10 -9.95 16 27 C -0.11 -1.17 4.46 -28.10 -0.13 -1.29 16 28 H 0.06 0.46 8.07 -51.93 -0.42 0.05 16 29 H 0.07 0.31 7.93 -51.93 -0.41 -0.10 16 30 H 0.08 0.38 4.92 -51.93 -0.26 0.13 16 31 H 0.07 0.50 5.54 -51.93 -0.29 0.21 16 32 H 0.07 0.50 5.84 -51.93 -0.30 0.20 16 33 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 34 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 36 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 37 H 0.11 2.77 5.90 -51.93 -0.31 2.47 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.56 7.89 -51.93 -0.41 0.15 16 41 H 0.02 0.46 7.61 -51.93 -0.40 0.07 16 42 H 0.07 1.05 7.79 -51.93 -0.40 0.64 16 43 H 0.08 1.51 7.96 -51.93 -0.41 1.09 16 44 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.10 0.53 5.22 -51.93 -0.27 0.26 16 46 H 0.07 0.77 7.37 -51.93 -0.38 0.38 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.40 4.27 8.80 -40.82 -0.36 3.91 16 49 H 0.11 1.31 7.80 -51.93 -0.41 0.91 16 50 H 0.11 0.79 7.95 -51.93 -0.41 0.37 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -35.41 372.36 -8.97 -44.38 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.90 Total: 1.61 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.92 Total: 8.93 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.93 Total: -57.92 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.41 -8.97 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041409355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.348 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds