Wall clock time and date at job start Tue Mar 31 2020 19:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.69720 * 2 1 4 4 O 1.21279 * 119.99997 * 123.74961 * 3 2 1 5 5 N 1.34778 * 119.99939 * 303.75484 * 3 2 1 6 6 C 1.47163 * 125.59597 * 5.58609 * 5 3 2 7 7 C 1.54665 * 107.34978 * 180.90793 * 6 5 3 8 8 C 1.53307 * 102.71685 * 20.50966 * 7 6 5 9 9 C 1.53299 * 112.22138 * 204.98606 * 8 7 6 10 10 C 1.54669 * 102.71716 * 271.82548 * 9 8 7 11 11 N 1.47164 * 107.34788 * 339.48762 * 10 9 8 12 12 C 1.36942 * 125.59325 * 179.06448 * 11 10 9 13 13 H 1.07998 * 119.99797 * 180.02562 * 12 11 10 14 14 C 1.38815 * 119.99555 * 0.02588 * 12 11 10 15 15 N 1.31617 * 120.00317 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99656 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47349 * 89.99618 * 16 14 12 18 18 H 1.48502 * 109.47057 * 210.00070 * 16 14 12 19 19 H 1.48502 * 109.47415 * 329.99789 * 16 14 12 20 20 C 1.47788 * 108.81729 * 359.09938 * 11 10 9 21 21 C 1.47785 * 125.59039 * 185.28260 * 5 3 2 22 22 C 1.53349 * 109.67629 * 239.48814 * 2 1 3 23 23 C 1.52910 * 108.67649 * 172.73007 * 22 2 1 24 24 N 1.45753 * 110.48805 * 50.75141 * 23 22 2 25 25 C 1.33352 * 124.10931 * 340.94933 * 24 23 22 26 26 O 1.21273 * 118.25266 * 182.17631 * 25 24 23 27 27 C 1.50182 * 123.50462 * 2.20021 * 25 24 23 28 28 H 1.09005 * 109.46783 * 193.41667 * 1 2 3 29 29 H 1.08999 * 109.47348 * 313.41087 * 1 2 3 30 30 H 1.09003 * 109.47536 * 73.42077 * 1 2 3 31 31 H 1.08999 * 109.86675 * 300.34910 * 6 5 3 32 32 H 1.08997 * 109.87031 * 61.46932 * 6 5 3 33 33 H 1.08998 * 110.75828 * 138.81675 * 7 6 5 34 34 H 1.09001 * 110.76226 * 262.01420 * 7 6 5 35 35 H 1.09001 * 110.75855 * 30.12881 * 9 8 7 36 36 H 1.08996 * 110.76174 * 153.51727 * 9 8 7 37 37 H 1.09003 * 109.86464 * 98.93164 * 10 9 8 38 38 H 1.08994 * 109.86534 * 220.04705 * 10 9 8 39 39 H 0.96999 * 120.00217 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.40041 * 263.37965 * 20 11 10 41 41 H 1.08996 * 110.40553 * 140.95960 * 20 11 10 42 42 H 1.09004 * 110.40676 * 276.61316 * 21 5 3 43 43 H 1.09005 * 110.40712 * 39.03363 * 21 5 3 44 44 H 1.09004 * 109.59982 * 52.97460 * 22 2 1 45 45 H 1.08998 * 109.60069 * 292.48827 * 22 2 1 46 46 H 1.09001 * 109.30137 * 171.06121 * 23 22 2 47 47 H 1.09003 * 109.30506 * 290.43995 * 23 22 2 48 48 H 0.97004 * 117.94621 * 160.92247 * 24 23 22 49 49 H 1.08990 * 109.40446 * 102.54582 * 27 25 24 50 50 H 1.08999 * 109.39923 * 222.37443 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4189 0.0000 4 8 2.7917 1.7931 0.8733 5 7 1.6545 2.2719 -0.9704 6 6 0.6604 1.9872 -2.0176 7 6 0.5631 3.2432 -2.9149 8 6 1.8843 3.9660 -2.6282 9 6 1.7894 5.4733 -2.8908 10 6 2.1534 5.5813 -4.3901 11 7 2.8850 4.3572 -4.7533 12 6 3.3672 4.0569 -5.9994 13 1 3.8931 3.1283 -6.1655 14 6 3.1801 4.9460 -7.0488 15 7 2.5387 6.0774 -6.8464 16 14 3.8372 4.5361 -8.7486 17 1 2.8008 3.7991 -9.5156 18 1 4.1816 5.7920 -9.4623 19 1 5.0516 3.6913 -8.6195 20 6 3.0133 3.5046 -3.5530 21 6 2.1587 3.6489 -1.1538 22 6 2.0463 -0.7331 -1.2440 23 6 3.5642 -0.5636 -1.3175 24 7 4.1795 -0.9195 -0.0450 25 6 3.5210 -0.9796 1.1131 26 8 4.1473 -1.2486 2.1162 27 6 2.0453 -0.7324 1.2415 28 1 -0.3633 -0.9997 0.2385 29 1 -0.3634 0.7062 0.7465 30 1 -0.3634 0.2932 -0.9849 31 1 0.9825 1.1317 -2.6113 32 1 -0.3083 1.7810 -1.5626 33 1 0.4962 2.9627 -3.9661 34 1 -0.2884 3.8593 -2.6260 35 1 0.7762 5.8335 -2.7123 36 1 2.5078 6.0182 -2.2785 37 1 1.2448 5.6609 -4.9871 38 1 2.7855 6.4537 -4.5559 39 1 2.4083 6.6989 -7.5796 40 1 3.9816 3.6610 -3.0776 41 1 2.8835 2.4551 -3.8167 42 1 1.6189 4.3406 -0.5068 43 1 3.2285 3.6924 -0.9493 44 1 1.5872 -0.3073 -2.1362 45 1 1.7996 -1.7924 -1.1729 46 1 3.9611 -1.2078 -2.1021 47 1 3.7999 0.4740 -1.5538 48 1 5.1273 -1.1260 -0.0403 49 1 1.5258 -1.6853 1.3413 50 1 1.8558 -0.1225 2.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041409359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:54 Heat of formation + Delta-G solvation = -36.897731 kcal Electronic energy + Delta-G solvation = -31341.657504 eV Core-core repulsion = 27369.436858 eV Total energy + Delta-G solvation = -3972.220645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.45760 -39.81911 -38.46174 -36.55960 -35.77874 -34.37441 -32.70400 -30.50717 -29.91583 -29.54390 -28.71754 -27.91078 -25.86893 -24.55878 -23.93937 -23.00802 -21.94359 -20.44609 -20.23635 -19.11457 -18.45970 -17.39808 -16.85974 -16.65879 -16.24829 -16.06947 -15.60734 -14.98044 -14.86651 -14.70129 -14.50770 -14.04772 -13.98080 -13.63946 -13.48422 -13.39424 -12.98046 -12.93025 -12.58510 -12.45119 -12.27068 -12.07471 -12.03925 -11.89119 -11.68273 -11.38682 -11.34710 -11.11688 -10.99174 -10.89741 -10.81179 -10.25611 -10.10420 -10.00223 -9.88103 -9.82918 -9.74126 -9.66429 -9.18045 -8.65137 -8.60122 -6.88814 -5.76625 -3.10148 2.53869 2.63136 2.88907 3.19543 3.35238 3.40999 3.42825 4.04519 4.16036 4.26224 4.43062 4.48151 4.54529 4.66046 4.84826 4.91798 4.98021 5.03180 5.11067 5.19316 5.26670 5.30372 5.36480 5.40104 5.41363 5.48186 5.58316 5.64438 5.68095 5.71213 5.75688 5.82861 5.88565 5.93818 6.07646 6.17576 6.27533 6.32451 6.44746 6.53850 6.65212 6.65833 6.75785 7.23553 7.49652 7.50333 7.57097 7.77290 8.09491 8.15736 8.19825 9.16507 9.76619 10.42491 11.34872 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.003257 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.617595 B = 8594.139798 C = 9229.650939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C 0.535 3.465 4 O -0.535 6.535 5 N -0.610 5.610 6 C 0.091 3.909 7 C -0.111 4.111 8 C -0.083 4.083 9 C -0.131 4.131 10 C 0.180 3.820 11 N -0.604 5.604 12 C -0.229 4.229 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.155 3.845 21 C 0.124 3.876 22 C -0.129 4.129 23 C 0.105 3.895 24 N -0.718 5.718 25 C 0.534 3.466 26 O -0.561 6.561 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.252 0.748 40 H 0.018 0.982 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.399 0.601 49 H 0.106 0.894 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -12.514 10.621 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 C 0.323 3.677 4 O -0.411 6.411 5 N -0.344 5.344 6 C -0.032 4.032 7 C -0.149 4.149 8 C -0.085 4.085 9 C -0.170 4.170 10 C 0.055 3.945 11 N -0.331 5.331 12 C -0.357 4.357 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.029 3.971 21 C 0.001 3.999 22 C -0.167 4.167 23 C -0.020 4.020 24 N -0.369 5.369 25 C 0.321 3.679 26 O -0.440 6.440 27 C -0.151 4.151 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.234 0.766 49 H 0.124 0.876 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.140 -12.339 11.444 18.281 hybrid contribution 0.667 -0.061 -1.162 1.341 sum -6.473 -12.400 10.281 17.360 Atomic orbital electron populations 1.22120 0.91613 1.03310 1.03835 1.20905 0.98037 0.92693 0.96838 1.19955 0.80834 0.86300 0.80613 1.90750 1.36383 1.77919 1.36071 1.48563 1.42078 1.14779 1.28967 1.22606 0.91787 0.99470 0.89294 1.22387 0.97134 0.94817 1.00566 1.21630 0.96496 0.97374 0.92969 1.22649 1.00695 0.92889 1.00737 1.21207 0.96377 0.89521 0.87347 1.44582 1.65815 1.18053 1.04633 1.19024 1.29660 1.02833 0.84172 0.90567 1.24779 1.00743 0.96681 0.98096 1.69954 1.46047 1.10083 1.30762 0.86149 0.78431 0.77093 0.84249 1.21619 1.21687 1.20744 1.21193 0.93709 0.94487 0.87739 1.22086 1.00035 0.81773 0.95971 1.22105 0.95000 1.01754 0.97840 1.21414 0.93411 1.01663 0.85514 1.45360 1.13400 1.70482 1.07704 1.19878 0.90232 0.75241 0.82554 1.90733 1.68325 1.49675 1.35256 1.21575 0.92286 1.02219 0.99000 0.91069 0.91690 0.90286 0.91021 0.90849 0.88913 0.90805 0.91777 0.92154 0.93487 0.93992 0.93748 0.96462 0.94486 0.91481 0.90524 0.88421 0.89539 0.89811 0.91327 0.76558 0.87626 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.80 37.16 0.29 -0.70 16 2 C -0.08 -0.74 0.50 -155.44 -0.08 -0.82 16 3 C 0.54 6.89 4.92 -10.98 -0.05 6.83 16 4 O -0.53 -9.14 15.49 5.56 0.09 -9.06 16 5 N -0.61 -7.40 3.34 -170.90 -0.57 -7.97 16 6 C 0.09 0.90 5.09 -2.80 -0.01 0.89 16 7 C -0.11 -1.41 5.90 -25.70 -0.15 -1.56 16 8 C -0.08 -1.26 0.62 -154.01 -0.10 -1.35 16 9 C -0.13 -2.20 5.98 -25.70 -0.15 -2.36 16 10 C 0.18 4.06 5.37 -2.80 -0.02 4.05 16 11 N -0.60 -14.31 3.41 -170.59 -0.58 -14.89 16 12 C -0.23 -6.03 10.28 -15.06 -0.15 -6.19 16 13 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 15 N -0.92 -25.97 10.30 55.49 0.57 -25.40 16 16 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.15 2.91 6.21 -3.30 -0.02 2.89 16 21 C 0.12 1.72 5.93 -3.19 -0.02 1.70 16 22 C -0.13 -0.97 4.74 -26.60 -0.13 -1.09 16 23 C 0.10 0.96 6.60 -4.49 -0.03 0.93 16 24 N -0.72 -8.05 5.44 -61.39 -0.33 -8.38 16 25 C 0.53 7.23 6.70 -11.87 -0.08 7.15 16 26 O -0.56 -9.89 17.78 5.56 0.10 -9.79 16 27 C -0.11 -1.16 4.47 -28.09 -0.13 -1.28 16 28 H 0.07 0.34 7.94 -51.93 -0.41 -0.07 16 29 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.45 4.89 -51.93 -0.25 0.19 16 31 H 0.07 0.63 5.52 -51.93 -0.29 0.35 16 32 H 0.07 0.58 5.84 -51.93 -0.30 0.27 16 33 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 34 H 0.07 0.85 7.83 -51.93 -0.41 0.45 16 35 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 36 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 38 H 0.04 1.08 7.49 -51.93 -0.39 0.69 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 41 H 0.04 0.67 8.00 -51.93 -0.42 0.25 16 42 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.08 1.19 7.81 -51.93 -0.41 0.78 16 44 H 0.10 0.65 5.21 -51.93 -0.27 0.38 16 45 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.78 7.37 -51.93 -0.38 0.40 16 48 H 0.40 4.19 8.80 -40.82 -0.36 3.83 16 49 H 0.11 0.80 7.95 -51.93 -0.41 0.38 16 50 H 0.11 1.28 7.80 -51.93 -0.40 0.87 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -34.20 373.36 -9.01 -43.21 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.96 Total: 1.57 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -0.92 Total: 8.81 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.91 Total: -56.64 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.19 Total: -18.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.20 -9.01 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041409359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.316 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds