Wall clock time and date at job start Tue Mar 31 2020 19:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.69720 * 2 1 4 4 O 1.21279 * 119.99997 * 123.74961 * 3 2 1 5 5 N 1.34778 * 119.99939 * 303.75484 * 3 2 1 6 6 C 1.47163 * 125.59597 * 5.58609 * 5 3 2 7 7 C 1.54665 * 107.34978 * 180.90793 * 6 5 3 8 8 C 1.53307 * 102.71685 * 20.50966 * 7 6 5 9 9 C 1.53299 * 112.22138 * 204.98606 * 8 7 6 10 10 C 1.54669 * 102.71716 * 271.82548 * 9 8 7 11 11 N 1.47164 * 107.34788 * 339.48762 * 10 9 8 12 12 C 1.36942 * 125.59325 * 179.06448 * 11 10 9 13 13 H 1.07998 * 119.99797 * 180.02562 * 12 11 10 14 14 C 1.38815 * 119.99555 * 0.02588 * 12 11 10 15 15 N 1.31617 * 120.00317 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99656 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47349 * 89.99618 * 16 14 12 18 18 H 1.48502 * 109.47057 * 210.00070 * 16 14 12 19 19 H 1.48502 * 109.47415 * 329.99789 * 16 14 12 20 20 C 1.47788 * 108.81729 * 359.09938 * 11 10 9 21 21 C 1.47785 * 125.59039 * 185.28260 * 5 3 2 22 22 C 1.53349 * 109.67629 * 239.48814 * 2 1 3 23 23 C 1.52910 * 108.67649 * 172.73007 * 22 2 1 24 24 N 1.45753 * 110.48805 * 50.75141 * 23 22 2 25 25 C 1.33352 * 124.10931 * 340.94933 * 24 23 22 26 26 O 1.21273 * 118.25266 * 182.17631 * 25 24 23 27 27 C 1.50182 * 123.50462 * 2.20021 * 25 24 23 28 28 H 1.09005 * 109.46783 * 193.41667 * 1 2 3 29 29 H 1.08999 * 109.47348 * 313.41087 * 1 2 3 30 30 H 1.09003 * 109.47536 * 73.42077 * 1 2 3 31 31 H 1.08999 * 109.86675 * 300.34910 * 6 5 3 32 32 H 1.08997 * 109.87031 * 61.46932 * 6 5 3 33 33 H 1.08998 * 110.75828 * 138.81675 * 7 6 5 34 34 H 1.09001 * 110.76226 * 262.01420 * 7 6 5 35 35 H 1.09001 * 110.75855 * 30.12881 * 9 8 7 36 36 H 1.08996 * 110.76174 * 153.51727 * 9 8 7 37 37 H 1.09003 * 109.86464 * 98.93164 * 10 9 8 38 38 H 1.08994 * 109.86534 * 220.04705 * 10 9 8 39 39 H 0.96999 * 120.00217 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.40041 * 263.37965 * 20 11 10 41 41 H 1.08996 * 110.40553 * 140.95960 * 20 11 10 42 42 H 1.09004 * 110.40676 * 276.61316 * 21 5 3 43 43 H 1.09005 * 110.40712 * 39.03363 * 21 5 3 44 44 H 1.09004 * 109.59982 * 52.97460 * 22 2 1 45 45 H 1.08998 * 109.60069 * 292.48827 * 22 2 1 46 46 H 1.09001 * 109.30137 * 171.06121 * 23 22 2 47 47 H 1.09003 * 109.30506 * 290.43995 * 23 22 2 48 48 H 0.97004 * 117.94621 * 160.92247 * 24 23 22 49 49 H 1.08990 * 109.40446 * 102.54582 * 27 25 24 50 50 H 1.08999 * 109.39923 * 222.37443 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4189 0.0000 4 8 2.7917 1.7931 0.8733 5 7 1.6545 2.2719 -0.9704 6 6 0.6604 1.9872 -2.0176 7 6 0.5631 3.2432 -2.9149 8 6 1.8843 3.9660 -2.6282 9 6 1.7894 5.4733 -2.8908 10 6 2.1534 5.5813 -4.3901 11 7 2.8850 4.3572 -4.7533 12 6 3.3672 4.0569 -5.9994 13 1 3.8931 3.1283 -6.1655 14 6 3.1801 4.9460 -7.0488 15 7 2.5387 6.0774 -6.8464 16 14 3.8372 4.5361 -8.7486 17 1 2.8008 3.7991 -9.5156 18 1 4.1816 5.7920 -9.4623 19 1 5.0516 3.6913 -8.6195 20 6 3.0133 3.5046 -3.5530 21 6 2.1587 3.6489 -1.1538 22 6 2.0463 -0.7331 -1.2440 23 6 3.5642 -0.5636 -1.3175 24 7 4.1795 -0.9195 -0.0450 25 6 3.5210 -0.9796 1.1131 26 8 4.1473 -1.2486 2.1162 27 6 2.0453 -0.7324 1.2415 28 1 -0.3633 -0.9997 0.2385 29 1 -0.3634 0.7062 0.7465 30 1 -0.3634 0.2932 -0.9849 31 1 0.9825 1.1317 -2.6113 32 1 -0.3083 1.7810 -1.5626 33 1 0.4962 2.9627 -3.9661 34 1 -0.2884 3.8593 -2.6260 35 1 0.7762 5.8335 -2.7123 36 1 2.5078 6.0182 -2.2785 37 1 1.2448 5.6609 -4.9871 38 1 2.7855 6.4537 -4.5559 39 1 2.4083 6.6989 -7.5796 40 1 3.9816 3.6610 -3.0776 41 1 2.8835 2.4551 -3.8167 42 1 1.6189 4.3406 -0.5068 43 1 3.2285 3.6924 -0.9493 44 1 1.5872 -0.3073 -2.1362 45 1 1.7996 -1.7924 -1.1729 46 1 3.9611 -1.2078 -2.1021 47 1 3.7999 0.4740 -1.5538 48 1 5.1273 -1.1260 -0.0403 49 1 1.5258 -1.6853 1.3413 50 1 1.8558 -0.1225 2.1248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041409359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:53 Heat of formation + Delta-G solvation = -61.739660 kcal Electronic energy + Delta-G solvation = -31342.734730 eV Core-core repulsion = 27369.436858 eV Total energy + Delta-G solvation = -3973.297872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.37432 -40.96011 -39.67035 -37.51519 -37.18970 -35.26124 -34.37212 -32.01999 -30.82504 -30.73000 -29.96246 -28.77937 -27.45470 -25.86898 -24.70521 -24.32344 -22.79693 -22.10059 -21.27384 -20.29790 -19.49936 -18.76626 -18.26712 -17.58536 -17.17541 -17.06141 -16.73830 -16.52518 -16.00710 -15.95420 -15.72506 -15.51386 -14.96790 -14.68446 -14.43725 -14.27710 -14.18428 -13.90778 -13.79863 -13.72517 -13.35801 -13.14300 -12.97426 -12.94502 -12.86709 -12.79937 -12.62840 -12.55547 -12.26796 -12.13553 -12.01576 -11.75697 -11.70735 -11.49477 -11.35054 -11.19993 -10.85648 -10.72589 -10.66026 -10.12026 -9.59424 -8.86152 -7.81762 -5.16530 1.48287 1.49689 1.57851 1.59111 1.63058 1.93809 2.34506 2.51571 3.24693 3.36305 3.43977 3.53535 3.58464 3.58771 3.71071 3.76725 3.90853 4.00706 4.24240 4.26918 4.32360 4.35532 4.37490 4.54062 4.56335 4.64492 4.66927 4.72197 4.75086 4.75822 4.85410 4.89939 4.93479 5.00248 5.04388 5.08618 5.11515 5.14712 5.28064 5.33517 5.38667 5.43449 5.49112 5.71100 5.76718 5.82299 6.22603 6.32592 6.54845 7.12307 7.13855 7.18315 7.80907 8.45446 9.28360 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.003257 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.617595 B = 8594.139798 C = 9229.650939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C 0.531 3.469 4 O -0.586 6.586 5 N -0.608 5.608 6 C 0.094 3.906 7 C -0.108 4.108 8 C -0.072 4.072 9 C -0.118 4.118 10 C 0.189 3.811 11 N -0.623 5.623 12 C -0.238 4.238 13 H 0.082 0.918 14 C -0.063 4.063 15 N -0.950 5.950 16 Si 0.973 3.027 17 H -0.282 1.282 18 H -0.299 1.299 19 H -0.272 1.272 20 C 0.155 3.845 21 C 0.130 3.870 22 C -0.126 4.126 23 C 0.098 3.902 24 N -0.714 5.714 25 C 0.523 3.477 26 O -0.615 6.615 27 C -0.108 4.108 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.019 0.981 38 H -0.002 1.002 39 H 0.245 0.755 40 H 0.003 0.997 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.043 0.957 48 H 0.399 0.601 49 H 0.142 0.858 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -15.096 10.358 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C 0.321 3.679 4 O -0.466 6.466 5 N -0.340 5.340 6 C -0.027 4.027 7 C -0.145 4.145 8 C -0.073 4.073 9 C -0.157 4.157 10 C 0.064 3.936 11 N -0.349 5.349 12 C -0.367 4.367 13 H 0.099 0.901 14 C -0.256 4.256 15 N -0.599 5.599 16 Si 0.802 3.198 17 H -0.209 1.209 18 H -0.226 1.226 19 H -0.197 1.197 20 C 0.030 3.970 21 C 0.007 3.993 22 C -0.163 4.163 23 C -0.025 4.025 24 N -0.363 5.363 25 C 0.312 3.688 26 O -0.498 6.498 27 C -0.148 4.148 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.016 0.984 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.128 0.872 47 H 0.061 0.939 48 H 0.233 0.767 49 H 0.159 0.841 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.508 -14.947 11.147 20.930 hybrid contribution 1.497 0.784 -1.089 2.010 sum -8.011 -14.163 10.058 19.130 Atomic orbital electron populations 1.22157 0.88779 1.05007 1.04582 1.20924 1.00043 0.89659 0.96968 1.20720 0.79878 0.87686 0.79638 1.90736 1.38721 1.79059 1.38129 1.48584 1.42210 1.13878 1.29323 1.22791 0.92855 0.98547 0.88539 1.22363 0.95860 0.96033 1.00286 1.21448 0.96758 0.96077 0.93047 1.22517 1.02194 0.94615 0.96349 1.20939 0.94038 0.87827 0.90803 1.44859 1.65573 1.19200 1.05262 1.19414 1.29017 1.02814 0.85449 0.90051 1.25566 1.01654 0.96798 1.01616 1.70176 1.47546 1.10980 1.31212 0.85152 0.78172 0.76457 0.79987 1.20908 1.22615 1.19689 1.21296 0.94539 0.94447 0.86722 1.21855 0.99025 0.83519 0.94886 1.22211 0.93154 1.03525 0.97389 1.21620 0.95223 1.00724 0.84961 1.45453 1.13567 1.69157 1.08128 1.20546 0.91647 0.74345 0.82255 1.90700 1.69700 1.52352 1.37078 1.21621 0.90326 1.03816 0.99020 0.88324 0.92379 0.88735 0.89187 0.87350 0.90622 0.88982 0.89106 0.91849 0.96316 0.98399 0.94541 0.97910 0.93276 0.90370 0.92821 0.86794 0.86454 0.87152 0.93893 0.76672 0.84061 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.80 71.98 0.56 -0.60 16 2 C -0.07 -1.08 0.50 -52.78 -0.03 -1.10 16 3 C 0.53 12.69 4.92 87.66 0.43 13.12 16 4 O -0.59 -20.11 15.49 -3.03 -0.05 -20.16 16 5 N -0.61 -13.19 3.34 -813.00 -2.71 -15.90 16 6 C 0.09 1.45 5.09 86.82 0.44 1.90 16 7 C -0.11 -2.39 5.90 31.26 0.18 -2.21 16 8 C -0.07 -2.07 0.62 -51.86 -0.03 -2.10 16 9 C -0.12 -3.91 5.98 31.26 0.19 -3.72 16 10 C 0.19 8.79 5.37 86.82 0.47 9.26 16 11 N -0.62 -29.98 3.41 -693.63 -2.37 -32.34 16 12 C -0.24 -12.69 10.28 84.03 0.86 -11.82 16 13 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 14 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 15 N -0.95 -55.38 10.30 21.65 0.22 -55.15 16 16 Si 0.97 44.19 29.55 68.60 2.03 46.21 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C 0.15 5.78 6.21 86.15 0.53 6.32 16 21 C 0.13 3.45 5.93 86.23 0.51 3.96 16 22 C -0.13 -1.32 4.74 30.68 0.15 -1.17 16 23 C 0.10 1.57 6.60 86.49 0.57 2.14 16 24 N -0.71 -15.41 5.44 -467.33 -2.54 -17.95 16 25 C 0.52 13.90 6.70 87.72 0.59 14.49 16 26 O -0.62 -22.25 17.78 -3.01 -0.05 -22.30 16 27 C -0.11 -2.03 4.47 29.71 0.13 -1.89 16 28 H 0.10 0.32 7.94 -2.38 -0.02 0.30 16 29 H 0.06 0.59 8.07 -2.39 -0.02 0.57 16 30 H 0.09 0.46 4.89 -2.39 -0.01 0.45 16 31 H 0.09 1.12 5.52 -2.39 -0.01 1.11 16 32 H 0.11 1.04 5.84 -2.39 -0.01 1.03 16 33 H 0.08 2.01 8.00 -2.39 -0.02 1.99 16 34 H 0.09 1.76 7.83 -2.39 -0.02 1.74 16 35 H 0.09 2.54 7.79 -2.39 -0.02 2.52 16 36 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 37 H 0.02 0.96 7.39 -2.39 -0.02 0.94 16 38 H 0.00 -0.12 7.49 -2.39 -0.02 -0.14 16 39 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.00 0.13 7.86 -2.39 -0.02 0.11 16 41 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 42 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 43 H 0.05 1.68 7.81 -2.38 -0.02 1.66 16 44 H 0.11 0.88 5.21 -2.38 -0.01 0.86 16 45 H 0.12 0.64 8.12 -2.39 -0.02 0.62 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.04 0.92 7.37 -2.39 -0.02 0.91 16 48 H 0.40 8.38 8.80 -92.71 -0.82 7.56 16 49 H 0.14 1.59 7.95 -2.39 -0.02 1.57 16 50 H 0.09 2.05 7.80 -2.39 -0.02 2.03 16 Total: -1.00 -80.73 373.36 0.70 -80.04 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.14 Total: 14.01 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 6.03 Total: 23.56 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -7.40 Total: -121.35 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.10 Total: -42.46 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.73 0.70 -80.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041409359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.297 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds