Wall clock time and date at job start Tue Mar 31 2020 19:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.59988 * 2 1 4 4 O 1.21284 * 120.00076 * 129.18181 * 3 2 1 5 5 N 1.34782 * 119.99927 * 309.18109 * 3 2 1 6 6 C 1.47575 * 125.67820 * 355.39521 * 5 3 2 7 7 C 1.55218 * 105.02825 * 203.83660 * 6 5 3 8 8 C 1.53563 * 101.41299 * 324.69222 * 7 6 5 9 9 C 1.53474 * 111.86575 * 155.63114 * 8 7 6 10 10 C 1.54631 * 102.74070 * 154.38854 * 9 8 7 11 11 N 1.47149 * 107.34309 * 339.33126 * 10 9 8 12 12 C 1.36935 * 125.60148 * 179.06612 * 11 10 9 13 13 H 1.08005 * 120.00543 * 185.09884 * 12 11 10 14 14 C 1.38810 * 120.00165 * 5.10190 * 12 11 10 15 15 N 1.31626 * 119.99736 * 354.87311 * 14 12 11 16 16 Si 1.86801 * 120.00629 * 174.87479 * 14 12 11 17 17 H 1.48503 * 109.47029 * 94.99560 * 16 14 12 18 18 H 1.48497 * 109.47273 * 215.00081 * 16 14 12 19 19 H 1.48503 * 109.46828 * 334.99928 * 16 14 12 20 20 C 1.47758 * 108.80441 * 359.09073 * 11 10 9 21 21 C 1.47445 * 125.67268 * 175.39381 * 5 3 2 22 22 C 1.53349 * 109.60301 * 120.32235 * 2 1 3 23 23 C 1.53068 * 108.42410 * 52.39094 * 22 2 1 24 24 C 1.50182 * 109.89305 * 48.89611 * 23 22 2 25 25 O 1.21283 * 118.24155 * 162.39537 * 24 23 22 26 26 N 1.33347 * 123.50507 * 342.42064 * 24 23 22 27 27 C 1.45752 * 124.11205 * 2.21675 * 26 24 23 28 28 H 1.08995 * 109.47234 * 59.99704 * 1 2 3 29 29 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46825 * 299.99979 * 1 2 3 31 31 H 1.09004 * 110.32895 * 322.72177 * 6 5 3 32 32 H 1.09001 * 110.33155 * 84.84278 * 6 5 3 33 33 H 1.08997 * 111.04139 * 82.69782 * 7 6 5 34 34 H 1.08995 * 111.03942 * 206.64513 * 7 6 5 35 35 H 1.09003 * 110.75610 * 272.69736 * 9 8 7 36 36 H 1.08996 * 110.75698 * 35.88700 * 9 8 7 37 37 H 1.09001 * 109.87473 * 98.77472 * 10 9 8 38 38 H 1.09005 * 109.86651 * 219.75692 * 10 9 8 39 39 H 0.96997 * 119.99774 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.39666 * 263.54808 * 20 11 10 41 41 H 1.08997 * 110.39687 * 141.13820 * 20 11 10 42 42 H 1.08995 * 109.99907 * 297.10254 * 21 5 3 43 43 H 1.09000 * 109.99702 * 58.39766 * 21 5 3 44 44 H 1.08997 * 109.67089 * 172.12157 * 22 2 1 45 45 H 1.09000 * 109.67094 * 292.62282 * 22 2 1 46 46 H 1.09003 * 109.40185 * 169.03028 * 23 22 2 47 47 H 1.09007 * 109.40140 * 288.85312 * 23 22 2 48 48 H 0.97006 * 117.94426 * 182.22283 * 26 24 23 49 49 H 1.08998 * 109.30686 * 220.61332 * 27 26 24 50 50 H 1.08998 * 109.29934 * 101.23764 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.8641 1.7683 0.8142 5 7 1.5669 2.3019 -0.9048 6 6 0.6352 1.9920 -2.0065 7 6 0.8853 3.0966 -3.0678 8 6 1.1825 4.3119 -2.1773 9 6 2.0275 5.3636 -2.9089 10 6 1.6542 6.6722 -2.1745 11 7 0.3642 6.4459 -1.5036 12 6 -0.3027 7.3579 -0.7300 13 1 -1.2055 7.0693 -0.2120 14 6 0.1813 8.6535 -0.6114 15 7 1.3333 8.9783 -1.1591 16 14 -0.8019 9.9360 0.3255 17 1 -0.3168 10.0048 1.7274 18 1 -0.6317 11.2611 -0.3229 19 1 -2.2389 9.5616 0.3168 20 6 -0.0932 5.0728 -1.8014 21 6 1.8998 3.7372 -0.9585 22 6 2.0446 -0.7293 1.2470 23 6 1.3720 -2.1026 1.3162 24 6 1.4774 -2.7909 -0.0144 25 8 1.2962 -3.9894 -0.0566 26 7 1.7599 -2.1548 -1.1518 27 6 2.0464 -0.7285 -1.2414 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 0.8555 1.0093 -2.4236 32 1 -0.3952 2.0304 -1.6532 33 1 1.7436 2.8513 -3.6933 34 1 -0.0041 3.2644 -3.6751 35 1 3.0906 5.1491 -2.7997 36 1 1.7518 5.4162 -3.9621 37 1 2.4186 6.9136 -1.4359 38 1 1.5627 7.4870 -2.8928 39 1 1.6717 9.8835 -1.0760 40 1 -0.7925 5.0783 -2.6375 41 1 -0.5558 4.6271 -0.9209 42 1 1.5527 4.2346 -0.0529 43 1 2.9769 3.8663 -1.0648 44 1 3.1254 -0.8531 1.1799 45 1 1.7957 -0.1529 2.1380 46 1 1.8635 -2.7086 2.0773 47 1 0.3206 -1.9782 1.5758 48 1 1.7758 -2.6739 -1.9712 49 1 1.5617 -0.3185 -2.1274 50 1 3.1234 -0.5818 -1.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041587581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:55 Heat of formation + Delta-G solvation = -58.735381 kcal Electronic energy + Delta-G solvation = -30704.035909 eV Core-core repulsion = 26730.868313 eV Total energy + Delta-G solvation = -3973.167597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.32973 -41.08159 -39.86504 -37.70607 -37.23637 -34.61926 -34.37641 -32.50715 -31.59478 -30.84940 -29.34713 -28.05062 -27.43045 -26.15884 -25.57611 -23.95804 -23.09635 -22.06230 -21.14121 -20.23198 -19.26170 -18.71655 -18.31154 -17.84818 -17.16429 -16.90950 -16.85227 -16.58333 -16.19929 -15.83547 -15.66994 -15.47374 -15.40202 -14.76850 -14.56917 -14.41485 -14.28670 -13.84050 -13.80954 -13.53247 -13.47957 -13.11832 -13.05140 -12.98587 -12.88749 -12.80954 -12.57720 -12.42808 -12.41538 -12.05518 -12.01585 -11.81350 -11.78551 -11.50571 -11.32650 -11.22404 -10.84972 -10.81685 -10.67924 -10.13080 -9.67160 -8.86174 -7.85114 -5.18843 1.44773 1.45620 1.47044 1.54865 1.58141 1.84653 2.29895 2.49358 3.22712 3.32925 3.36110 3.53613 3.57809 3.61084 3.62711 3.69530 3.88344 4.00953 4.09465 4.11943 4.24004 4.33156 4.39787 4.44251 4.55781 4.66374 4.68607 4.73964 4.75815 4.77432 4.83712 4.87711 4.95670 4.99908 5.02040 5.05485 5.09610 5.14022 5.22530 5.29846 5.30941 5.42340 5.47296 5.70853 5.80078 5.80326 6.21574 6.23350 6.51377 7.06192 7.11831 7.16678 7.80121 8.43780 9.25380 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.002698 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.227213 B =10374.368776 C =10795.135140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C 0.537 3.463 4 O -0.582 6.582 5 N -0.608 5.608 6 C 0.086 3.914 7 C -0.108 4.108 8 C -0.073 4.073 9 C -0.114 4.114 10 C 0.183 3.817 11 N -0.628 5.628 12 C -0.238 4.238 13 H 0.080 0.920 14 C -0.067 4.067 15 N -0.950 5.950 16 Si 0.973 3.027 17 H -0.292 1.292 18 H -0.294 1.294 19 H -0.266 1.266 20 C 0.149 3.851 21 C 0.137 3.863 22 C -0.097 4.097 23 C -0.129 4.129 24 C 0.521 3.479 25 O -0.602 6.602 26 N -0.701 5.701 27 C 0.122 3.878 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.088 0.912 37 H -0.003 1.003 38 H 0.009 0.991 39 H 0.245 0.755 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.120 0.880 48 H 0.411 0.589 49 H 0.118 0.882 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -22.473 -5.417 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.086 4.086 3 C 0.326 3.674 4 O -0.462 6.462 5 N -0.341 5.341 6 C -0.034 4.034 7 C -0.146 4.146 8 C -0.074 4.074 9 C -0.153 4.153 10 C 0.058 3.942 11 N -0.354 5.354 12 C -0.367 4.367 13 H 0.098 0.902 14 C -0.260 4.260 15 N -0.600 5.600 16 Si 0.801 3.199 17 H -0.219 1.219 18 H -0.221 1.221 19 H -0.191 1.191 20 C 0.024 3.976 21 C 0.014 3.986 22 C -0.135 4.135 23 C -0.169 4.169 24 C 0.309 3.691 25 O -0.485 6.485 26 N -0.353 5.353 27 C -0.002 4.002 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.015 0.985 38 H 0.027 0.973 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.128 0.872 47 H 0.138 0.862 48 H 0.248 0.752 49 H 0.136 0.864 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.198 -22.604 -4.697 23.118 hybrid contribution 0.045 1.616 0.736 1.776 sum -1.154 -20.988 -3.962 21.390 Atomic orbital electron populations 1.22247 0.90326 1.04110 1.04713 1.20979 0.99177 0.90124 0.98274 1.20442 0.80411 0.87204 0.79382 1.90720 1.34655 1.80325 1.40487 1.48723 1.46640 1.08330 1.30365 1.23126 0.93691 1.00611 0.86004 1.22694 1.04645 0.90888 0.96332 1.21449 0.95638 0.95659 0.94690 1.22572 0.99372 0.93735 0.99606 1.20978 0.86390 0.93666 0.93153 1.44894 1.21731 1.11222 1.57570 1.19416 1.05676 0.90586 1.21011 0.90195 1.25619 0.98516 0.99428 1.02459 1.70197 1.20445 1.18524 1.50805 0.85144 0.78679 0.78597 0.77445 1.21917 1.22051 1.19069 1.21551 0.94338 0.84009 0.97682 1.21454 0.98907 0.80514 0.97719 1.21479 1.00658 0.94390 0.96984 1.21716 1.05109 0.95875 0.94183 1.20457 0.74677 0.86701 0.87251 1.90759 1.53043 1.16948 1.87711 1.45267 1.70118 1.09815 1.10068 1.21569 1.01583 0.79550 0.97520 0.88900 0.90182 0.92044 0.86640 0.89375 0.88257 0.87298 0.90597 0.89331 0.98457 0.97279 0.94569 0.94189 0.94775 0.94850 0.92538 0.91179 0.90389 0.87215 0.86248 0.75171 0.86408 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.57 71.98 0.54 -1.27 16 2 C -0.08 -1.23 0.49 -52.84 -0.03 -1.26 16 3 C 0.54 12.91 6.57 87.66 0.58 13.49 16 4 O -0.58 -19.93 16.35 -3.04 -0.05 -19.98 16 5 N -0.61 -13.63 3.31 -812.93 -2.69 -16.33 16 6 C 0.09 1.13 4.91 86.93 0.43 1.55 16 7 C -0.11 -1.66 6.06 31.54 0.19 -1.47 16 8 C -0.07 -2.02 0.61 -51.87 -0.03 -2.06 16 9 C -0.11 -3.67 5.97 31.31 0.19 -3.49 16 10 C 0.18 8.75 5.37 86.81 0.47 9.21 16 11 N -0.63 -30.98 3.41 -693.51 -2.36 -33.34 16 12 C -0.24 -13.16 10.27 84.03 0.86 -12.30 16 13 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 14 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 15 N -0.95 -57.51 10.33 21.65 0.22 -57.28 16 16 Si 0.97 45.96 29.56 68.60 2.03 47.99 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.15 5.34 6.09 86.21 0.52 5.87 16 21 C 0.14 4.24 6.08 86.08 0.52 4.76 16 22 C -0.10 -1.58 4.28 30.73 0.13 -1.45 16 23 C -0.13 -1.79 5.40 29.71 0.16 -1.63 16 24 C 0.52 9.02 6.91 87.72 0.61 9.63 16 25 O -0.60 -15.65 17.78 -3.04 -0.05 -15.71 16 26 N -0.70 -8.06 5.32 -467.33 -2.49 -10.55 16 27 C 0.12 1.22 5.63 86.49 0.49 1.71 16 28 H 0.09 0.81 4.23 -2.39 -0.01 0.80 16 29 H 0.08 0.78 5.79 -2.39 -0.01 0.77 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 0.65 4.59 -2.38 -0.01 0.64 16 32 H 0.09 1.04 6.85 -2.39 -0.02 1.02 16 33 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.11 1.34 7.77 -2.39 -0.02 1.32 16 35 H 0.08 2.25 7.64 -2.39 -0.02 2.23 16 36 H 0.09 2.44 8.05 -2.39 -0.02 2.42 16 37 H 0.00 -0.16 7.54 -2.39 -0.02 -0.18 16 38 H 0.01 0.49 7.36 -2.38 -0.02 0.47 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.04 1.34 7.80 -2.39 -0.02 1.32 16 41 H 0.03 1.24 7.97 -2.39 -0.02 1.22 16 42 H 0.03 1.32 7.80 -2.39 -0.02 1.30 16 43 H 0.06 1.87 7.56 -2.39 -0.02 1.85 16 44 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 45 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 46 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.12 1.32 6.95 -2.38 -0.02 1.30 16 48 H 0.41 3.64 8.80 -92.70 -0.82 2.83 16 49 H 0.12 0.52 5.14 -2.39 -0.01 0.51 16 50 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 Total: -1.00 -80.81 371.70 0.85 -79.96 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.15 Total: 7.32 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.10 Total: 17.92 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -7.32 Total: -117.50 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.10 Total: -35.68 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -80.81 0.85 -79.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041587581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.229 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds