Wall clock time and date at job start Tue Mar 31 2020 19:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.73857 * 2 1 4 4 O 1.21284 * 119.99762 * 124.02318 * 3 2 1 5 5 N 1.34770 * 120.00184 * 304.03603 * 3 2 1 6 6 C 1.47174 * 125.59356 * 5.58471 * 5 3 2 7 7 C 1.54664 * 107.35053 * 180.91161 * 6 5 3 8 8 C 1.53306 * 102.71398 * 20.50660 * 7 6 5 9 9 C 1.53308 * 112.21807 * 204.98184 * 8 7 6 10 10 C 1.54655 * 102.71907 * 271.82917 * 9 8 7 11 11 N 1.47161 * 107.35389 * 339.49053 * 10 9 8 12 12 C 1.36939 * 125.59578 * 179.06405 * 11 10 9 13 13 H 1.08002 * 119.99884 * 180.02562 * 12 11 10 14 14 C 1.38809 * 119.99753 * 0.02562 * 12 11 10 15 15 N 1.31621 * 120.00336 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99842 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47251 * 119.99930 * 16 14 12 19 19 H 1.48497 * 109.47293 * 239.99888 * 16 14 12 20 20 C 1.47790 * 108.81108 * 359.09916 * 11 10 9 21 21 C 1.47792 * 125.59636 * 185.28760 * 5 3 2 22 22 C 1.53350 * 109.60531 * 239.59087 * 2 1 3 23 23 C 1.53065 * 108.42562 * 172.71320 * 22 2 1 24 24 C 1.50178 * 109.89072 * 48.90534 * 23 22 2 25 25 O 1.21278 * 118.25030 * 162.41462 * 24 23 22 26 26 N 1.33356 * 123.50906 * 342.41640 * 24 23 22 27 27 C 1.45758 * 124.10502 * 2.22092 * 26 24 23 28 28 H 1.09004 * 109.47446 * 193.61567 * 1 2 3 29 29 H 1.08996 * 109.47195 * 313.62440 * 1 2 3 30 30 H 1.09003 * 109.46500 * 73.61801 * 1 2 3 31 31 H 1.08998 * 109.86746 * 300.35504 * 6 5 3 32 32 H 1.09003 * 109.86720 * 61.47131 * 6 5 3 33 33 H 1.09000 * 110.75979 * 138.81242 * 7 6 5 34 34 H 1.09000 * 110.75764 * 262.01721 * 7 6 5 35 35 H 1.08998 * 110.75816 * 30.14158 * 9 8 7 36 36 H 1.09004 * 110.76088 * 153.52072 * 9 8 7 37 37 H 1.09003 * 109.87076 * 98.93479 * 10 9 8 38 38 H 1.09006 * 109.86730 * 220.04797 * 10 9 8 39 39 H 0.96997 * 119.99852 * 179.97438 * 15 14 12 40 40 H 1.09004 * 110.39910 * 263.37580 * 20 11 10 41 41 H 1.09000 * 110.40243 * 140.96508 * 20 11 10 42 42 H 1.09007 * 110.39707 * 276.60775 * 21 5 3 43 43 H 1.08999 * 110.39945 * 39.02262 * 21 5 3 44 44 H 1.09004 * 109.66866 * 52.98013 * 22 2 1 45 45 H 1.08998 * 109.70307 * 292.46683 * 22 2 1 46 46 H 1.09000 * 109.39998 * 169.03078 * 23 22 2 47 47 H 1.09000 * 109.40214 * 288.77635 * 23 22 2 48 48 H 0.96996 * 117.95026 * 182.22939 * 26 24 23 49 49 H 1.08995 * 109.30194 * 220.61543 * 27 26 24 50 50 H 1.08998 * 109.30092 * 101.24012 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0389 1.4184 0.0000 4 8 2.7969 1.7907 0.8706 5 7 1.6517 2.2733 -0.9672 6 6 0.6525 1.9910 -2.0103 7 6 0.5520 3.2485 -2.9051 8 6 1.8750 3.9699 -2.6232 9 6 1.7800 5.4778 -2.8830 10 6 2.1372 5.5879 -4.3837 11 7 2.8662 4.3638 -4.7524 12 6 3.3425 4.0652 -6.0011 13 1 3.8669 3.1365 -6.1712 14 6 3.1511 4.9562 -7.0481 15 7 2.5125 6.0882 -6.8407 16 14 3.8014 4.5492 -8.7514 17 1 4.4773 3.2274 -8.7204 18 1 2.6721 4.5047 -9.7148 19 1 4.7710 5.5918 -9.1733 20 6 2.9994 3.5093 -3.5539 21 6 2.1561 3.6503 -1.1507 22 6 2.0445 -0.7312 -1.2459 23 6 3.5638 -0.5584 -1.3153 24 6 4.1768 -0.8868 0.0158 25 8 5.3666 -1.1178 0.0585 26 7 3.4828 -0.9380 1.1534 27 6 2.0430 -0.7292 1.2425 28 1 -0.3634 -0.9988 0.2419 29 1 -0.3633 0.7090 0.7439 30 1 -0.3632 0.2899 -0.9860 31 1 0.9712 1.1363 -2.6068 32 1 -0.3143 1.7848 -1.5510 33 1 0.4802 2.9698 -3.9564 34 1 -0.2977 3.8648 -2.6112 35 1 0.7680 5.8384 -2.6992 36 1 2.5017 6.0212 -2.2731 37 1 1.2261 5.6691 -4.9765 38 1 2.7692 6.4601 -4.5510 39 1 2.3791 6.7109 -7.5724 40 1 3.9701 3.6641 -3.0828 41 1 2.8676 2.4602 -3.8188 42 1 1.6197 4.3412 -0.5001 43 1 3.2268 3.6925 -0.9510 44 1 1.5855 -0.3043 -2.1376 45 1 1.7984 -1.7909 -1.1779 46 1 3.9698 -1.2259 -2.0754 47 1 3.7993 0.4730 -1.5778 48 1 3.9664 -1.1259 1.9729 49 1 1.8194 -0.1338 2.1276 50 1 1.5434 -1.6944 1.3257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041587586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:07 Heat of formation + Delta-G solvation = -61.443841 kcal Electronic energy + Delta-G solvation = -31386.950661 eV Core-core repulsion = 27413.665617 eV Total energy + Delta-G solvation = -3973.285044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.36610 -40.96886 -39.74558 -37.49376 -37.21056 -34.91543 -34.11121 -32.46818 -31.88974 -30.83054 -29.82153 -27.55823 -27.17913 -25.84865 -25.29879 -24.30954 -22.96941 -22.12287 -21.49423 -20.31364 -19.28063 -18.67890 -18.27700 -17.61037 -17.17158 -17.04390 -16.76658 -16.51907 -16.06361 -15.99755 -15.72271 -15.41447 -14.95309 -14.68886 -14.45065 -14.31289 -14.18437 -13.89881 -13.85030 -13.78497 -13.37138 -13.33960 -13.11421 -12.92980 -12.88210 -12.77571 -12.60051 -12.48390 -12.23921 -12.07144 -11.98118 -11.79397 -11.72502 -11.51648 -11.39060 -11.21489 -10.85446 -10.71404 -10.68863 -10.06175 -9.58769 -8.88276 -7.84024 -5.18824 1.46043 1.47425 1.56994 1.57057 1.59870 1.95424 2.34553 2.49573 3.23768 3.34248 3.41798 3.52639 3.57452 3.61612 3.67139 3.74561 3.89302 3.98814 4.24043 4.26467 4.29146 4.33700 4.36039 4.52942 4.58989 4.66669 4.69193 4.71552 4.74144 4.74303 4.83592 4.88946 4.92946 4.98828 5.03362 5.07683 5.09957 5.14100 5.26483 5.33689 5.39481 5.42467 5.46819 5.69752 5.79680 5.80659 6.20824 6.30656 6.55831 7.12272 7.12838 7.16558 7.78507 8.42954 9.26145 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003414 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.939270 B = 8200.331484 C = 8984.857808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C 0.529 3.471 4 O -0.581 6.581 5 N -0.610 5.610 6 C 0.094 3.906 7 C -0.108 4.108 8 C -0.072 4.072 9 C -0.117 4.117 10 C 0.189 3.811 11 N -0.622 5.622 12 C -0.239 4.239 13 H 0.078 0.922 14 C -0.061 4.061 15 N -0.948 5.948 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.296 1.296 20 C 0.153 3.847 21 C 0.130 3.870 22 C -0.108 4.108 23 C -0.142 4.142 24 C 0.517 3.483 25 O -0.618 6.618 26 N -0.702 5.702 27 C 0.130 3.870 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.020 0.980 38 H -0.002 1.002 39 H 0.246 0.754 40 H 0.000 1.000 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.401 0.599 49 H 0.084 0.916 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -15.033 15.845 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C 0.319 3.681 4 O -0.461 6.461 5 N -0.342 5.342 6 C -0.027 4.027 7 C -0.145 4.145 8 C -0.074 4.074 9 C -0.155 4.155 10 C 0.064 3.936 11 N -0.349 5.349 12 C -0.368 4.368 13 H 0.096 0.904 14 C -0.255 4.255 15 N -0.598 5.598 16 Si 0.802 3.198 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.224 1.224 20 C 0.028 3.972 21 C 0.007 3.993 22 C -0.146 4.146 23 C -0.181 4.181 24 C 0.305 3.695 25 O -0.502 6.502 26 N -0.350 5.350 27 C 0.006 3.994 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.017 0.983 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.120 0.880 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.092 0.908 48 H 0.236 0.764 49 H 0.102 0.898 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.253 -14.889 15.985 25.047 hybrid contribution 1.408 0.765 -0.903 1.839 sum -10.845 -14.124 15.082 23.336 Atomic orbital electron populations 1.22097 0.88105 1.05382 1.04703 1.21216 1.00464 0.89747 0.97813 1.20752 0.80025 0.87612 0.79708 1.90717 1.38177 1.79075 1.38137 1.48623 1.41974 1.13917 1.29728 1.22782 0.92853 0.98350 0.88701 1.22367 0.95860 0.96089 1.00234 1.21450 0.96616 0.96201 0.93112 1.22516 1.02338 0.94441 0.96244 1.20954 0.94084 0.87703 0.90897 1.44862 1.65780 1.19178 1.05061 1.19431 1.29213 1.02761 0.85439 0.90407 1.25553 1.01564 0.96765 1.01583 1.70179 1.47518 1.10832 1.31231 0.85086 0.77271 0.77429 0.80009 1.19258 1.21508 1.22377 1.21299 0.94655 0.94262 0.86971 1.21853 0.98913 0.83667 0.94839 1.21951 0.91716 1.03428 0.97464 1.21684 0.98748 1.03599 0.94114 1.20476 0.86221 0.75160 0.87661 1.90712 1.18218 1.53127 1.88113 1.45294 1.10342 1.70227 1.09170 1.21577 0.78813 1.01566 0.97436 0.87888 0.91700 0.89154 0.89775 0.86931 0.90908 0.88624 0.88822 0.91799 0.96210 0.98345 0.94454 0.98200 0.93805 0.89886 0.93126 0.87974 0.86511 0.87059 0.90833 0.76353 0.89776 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 7.77 71.98 0.56 -0.25 16 2 C -0.09 -1.17 0.50 -52.84 -0.03 -1.19 16 3 C 0.53 12.14 4.85 87.66 0.42 12.57 16 4 O -0.58 -18.60 15.61 -3.04 -0.05 -18.65 16 5 N -0.61 -13.44 3.34 -812.99 -2.71 -16.15 16 6 C 0.09 1.54 5.07 86.82 0.44 1.98 16 7 C -0.11 -2.49 5.90 31.26 0.18 -2.30 16 8 C -0.07 -2.17 0.62 -51.87 -0.03 -2.20 16 9 C -0.12 -3.94 5.98 31.26 0.19 -3.75 16 10 C 0.19 8.96 5.37 86.82 0.47 9.43 16 11 N -0.62 -31.11 3.41 -693.65 -2.37 -33.48 16 12 C -0.24 -13.25 10.28 84.03 0.86 -12.38 16 13 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 14 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 15 N -0.95 -56.15 10.30 21.65 0.22 -55.93 16 16 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 C 0.15 6.09 6.21 86.15 0.53 6.63 16 21 C 0.13 3.52 5.93 86.22 0.51 4.03 16 22 C -0.11 -1.36 4.75 30.73 0.15 -1.21 16 23 C -0.14 -3.16 5.50 29.71 0.16 -3.00 16 24 C 0.52 14.33 7.28 87.71 0.64 14.97 16 25 O -0.62 -23.38 17.78 -3.02 -0.05 -23.44 16 26 N -0.70 -14.36 4.92 -467.30 -2.30 -16.66 16 27 C 0.13 1.62 5.40 86.49 0.47 2.08 16 28 H 0.10 0.04 7.95 -2.38 -0.02 0.02 16 29 H 0.06 0.44 8.07 -2.39 -0.02 0.42 16 30 H 0.09 0.36 4.90 -2.39 -0.01 0.35 16 31 H 0.08 1.22 5.53 -2.39 -0.01 1.21 16 32 H 0.11 1.06 5.85 -2.39 -0.01 1.05 16 33 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 34 H 0.10 1.84 7.83 -2.39 -0.02 1.82 16 35 H 0.09 2.62 7.79 -2.39 -0.02 2.61 16 36 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 37 H 0.02 1.03 7.39 -2.39 -0.02 1.01 16 38 H 0.00 -0.10 7.49 -2.38 -0.02 -0.11 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.00 0.01 7.86 -2.38 -0.02 -0.01 16 41 H 0.04 1.67 8.01 -2.39 -0.02 1.65 16 42 H 0.08 2.02 8.08 -2.38 -0.02 2.00 16 43 H 0.05 1.64 7.81 -2.39 -0.02 1.62 16 44 H 0.10 1.09 5.22 -2.39 -0.01 1.08 16 45 H 0.12 0.81 8.13 -2.39 -0.02 0.79 16 46 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.07 2.06 7.43 -2.39 -0.02 2.04 16 48 H 0.40 7.87 8.80 -92.71 -0.82 7.05 16 49 H 0.08 1.10 7.88 -2.39 -0.02 1.08 16 50 H 0.12 0.56 7.98 -2.39 -0.02 0.54 16 Total: -1.00 -82.18 373.48 0.91 -81.28 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.14 Total: 13.16 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 5.99 Total: 22.40 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -7.16 Total: -122.22 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.10 Total: -42.09 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -82.18 0.91 -81.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041587586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.834 kcal (2) G-P(sol) polarization free energy of solvation -82.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds