Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 C 1.52997 * 109.47500 * 239.99604 * 2 1 3 5 5 C 1.50704 * 109.46936 * 119.99344 * 2 1 3 6 6 C 1.35321 * 126.66351 * 60.30402 * 5 2 1 7 7 C 1.42266 * 103.92384 * 180.09846 * 6 5 2 8 8 C 1.48330 * 126.94041 * 179.89028 * 7 6 5 9 9 O 1.21487 * 119.99940 * 359.42802 * 8 7 6 10 10 N 1.34776 * 119.99723 * 179.71051 * 8 7 6 11 11 C 1.46500 * 119.99928 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46160 * 60.02174 * 11 10 8 13 13 C 1.53049 * 109.45750 * 300.06395 * 11 10 8 14 14 C 1.53183 * 109.31048 * 301.34577 * 13 11 10 15 15 N 1.46927 * 108.77761 * 305.36371 * 14 13 11 16 16 C 1.36940 * 120.63237 * 233.63259 * 15 14 13 17 17 H 1.08002 * 119.99820 * 152.60136 * 16 15 14 18 18 C 1.38809 * 119.99883 * 332.60598 * 16 15 14 19 19 N 1.31625 * 120.00028 * 159.37126 * 18 16 15 20 20 Si 1.86797 * 120.00281 * 339.37260 * 18 16 15 21 21 H 1.48498 * 109.47361 * 92.92608 * 20 18 16 22 22 H 1.48504 * 109.47351 * 212.93054 * 20 18 16 23 23 H 1.48506 * 109.46799 * 332.92491 * 20 18 16 24 24 C 1.46921 * 118.73778 * 53.61058 * 15 14 13 25 25 C 1.53033 * 109.46323 * 179.97438 * 11 10 8 26 26 N 1.30994 * 106.12045 * 359.62324 * 7 6 5 27 27 O 1.20904 * 111.43912 * 0.24349 * 26 7 6 28 28 H 1.08998 * 109.47653 * 300.00413 * 1 2 3 29 29 H 1.09011 * 109.46815 * 60.00378 * 1 2 3 30 30 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47316 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46358 * 300.00000 * 3 2 1 33 33 H 1.08998 * 109.47091 * 59.99244 * 3 2 1 34 34 H 1.09000 * 109.46832 * 300.00548 * 4 2 1 35 35 H 1.08996 * 109.46771 * 59.99789 * 4 2 1 36 36 H 1.08995 * 109.47386 * 180.02562 * 4 2 1 37 37 H 1.08002 * 128.03654 * 359.97438 * 6 5 2 38 38 H 0.96997 * 120.00686 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47342 * 60.00592 * 12 11 10 40 40 H 1.08998 * 109.47388 * 180.02562 * 12 11 10 41 41 H 1.09007 * 109.47174 * 300.00254 * 12 11 10 42 42 H 1.09005 * 109.49511 * 61.29434 * 13 11 10 43 43 H 1.09002 * 109.49765 * 181.39008 * 13 11 10 44 44 H 1.09002 * 109.58692 * 185.57603 * 14 13 11 45 45 H 1.08995 * 109.59073 * 65.14934 * 14 13 11 46 46 H 0.97000 * 119.99962 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.58554 * 186.61107 * 24 15 14 48 48 H 1.08993 * 109.70923 * 66.24925 * 24 15 14 49 49 H 1.09004 * 109.50201 * 178.60344 * 25 11 10 50 50 H 1.09002 * 109.49664 * 298.66428 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.7946 -1.9974 1.5742 7 6 2.4868 -2.1560 2.8070 8 6 2.5612 -3.3837 3.6360 9 8 1.9822 -4.3915 3.2824 10 7 3.2663 -3.3795 4.7846 11 6 3.3403 -4.5922 5.6032 12 6 3.9719 -5.7211 4.7861 13 6 1.9304 -5.0027 6.0347 14 6 1.2882 -3.8570 6.8230 15 7 2.1769 -3.4911 7.9344 16 6 1.7074 -3.4543 9.2202 17 1 2.3814 -3.6266 10.0464 18 6 0.3651 -3.1957 9.4618 19 7 -0.1770 -3.5481 10.6082 20 14 -0.6717 -2.3476 8.1599 21 1 -1.3406 -3.3703 7.3161 22 1 -1.6985 -1.5009 8.8188 23 1 0.1997 -1.4973 7.3096 24 6 3.5792 -3.1660 7.6400 25 6 4.1962 -4.3197 6.8421 26 7 3.0501 -1.0005 3.0591 27 8 2.8061 -0.1918 2.1941 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 1.2127 -2.7327 1.0383 38 1 3.7256 -2.5738 5.0689 39 1 4.9758 -5.4289 4.4781 40 1 4.0265 -6.6236 5.3948 41 1 3.3629 -5.9151 3.9031 42 1 1.3284 -5.2193 5.1522 43 1 1.9868 -5.8908 6.6643 44 1 0.3244 -4.1796 7.2169 45 1 1.1483 -2.9966 6.1687 46 1 -1.1151 -3.3677 10.7769 47 1 4.1271 -3.0329 8.5729 48 1 3.6284 -2.2488 7.0532 49 1 4.2313 -5.2142 7.4641 50 1 5.2068 -4.0510 6.5342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045500590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = 20.112872 kcal Electronic energy + Delta-G solvation = -30602.282096 eV Core-core repulsion = 26632.533616 eV Total energy + Delta-G solvation = -3969.748480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -46.23895 -41.64502 -39.18366 -38.30981 -36.36577 -35.18922 -33.92123 -32.74099 -32.09989 -31.81817 -29.36846 -28.32292 -28.18740 -26.14841 -25.66569 -24.51743 -24.27549 -23.11478 -22.42569 -20.85396 -20.37078 -18.95253 -18.92518 -18.24361 -18.00641 -17.30092 -16.64751 -16.19350 -15.98259 -15.91238 -15.38652 -15.29817 -15.21120 -14.99534 -14.96670 -14.72468 -14.64256 -14.32607 -13.80248 -13.64375 -13.28682 -13.24396 -13.22956 -12.96541 -12.78047 -12.72160 -12.65788 -12.58620 -12.29412 -12.25403 -12.12439 -12.04329 -11.81295 -11.75299 -11.70805 -11.55981 -11.43013 -10.91889 -10.82589 -10.50820 -10.20051 -8.99290 -8.23565 -5.53512 -0.01573 0.59715 1.19567 1.29018 1.37151 1.74770 1.92520 2.02723 2.32562 2.80921 2.98602 3.26863 3.30932 3.65441 3.78618 3.82443 3.90923 3.93556 3.96249 4.00252 4.20821 4.24673 4.35933 4.37439 4.53807 4.56350 4.71844 4.75981 4.76284 4.77743 4.79021 4.83288 4.87009 4.90261 4.98734 4.98987 5.01529 5.04123 5.08144 5.11266 5.25680 5.27176 5.30593 5.37168 5.40621 5.50444 5.81420 6.07637 6.30251 6.84797 6.86747 6.99899 7.55762 7.97869 8.96371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003578 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.863029 B = 7822.650290 C = 8912.567945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.017 3.983 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.009 4.009 6 C -0.189 4.189 7 C -0.046 4.046 8 C 0.596 3.404 9 O -0.542 6.542 10 N -0.695 5.695 11 C 0.183 3.817 12 C -0.151 4.151 13 C -0.136 4.136 14 C 0.135 3.865 15 N -0.616 5.616 16 C -0.242 4.242 17 H 0.064 0.936 18 C -0.028 4.028 19 N -0.951 5.951 20 Si 0.936 3.064 21 H -0.286 1.286 22 H -0.306 1.306 23 H -0.274 1.274 24 C 0.140 3.860 25 C -0.125 4.125 26 N -0.350 5.350 27 O 0.128 5.872 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.190 0.810 38 H 0.408 0.592 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.012 0.988 46 H 0.262 0.738 47 H 0.068 0.932 48 H 0.029 0.971 49 H 0.083 0.917 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 6.661 -27.578 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.206 4.206 4 C -0.197 4.197 5 C -0.072 4.072 6 C -0.211 4.211 7 C -0.204 4.204 8 C 0.380 3.620 9 O -0.419 6.419 10 N -0.346 5.346 11 C 0.098 3.902 12 C -0.209 4.209 13 C -0.176 4.176 14 C 0.009 3.991 15 N -0.341 5.341 16 C -0.372 4.372 17 H 0.082 0.918 18 C -0.223 4.223 19 N -0.598 5.598 20 Si 0.767 3.233 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.199 1.199 24 C 0.016 3.984 25 C -0.164 4.164 26 N -0.050 5.050 27 O 0.052 5.948 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.207 0.793 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.102 0.898 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.430 6.317 -26.641 28.648 hybrid contribution -1.324 0.241 -0.012 1.345 sum 7.106 6.558 -26.653 28.353 Atomic orbital electron populations 1.22001 0.91279 1.03177 1.03652 1.19449 0.96565 0.95782 0.86634 1.21945 1.01883 0.92992 1.03743 1.21967 1.01639 1.00726 0.95354 1.25130 0.95028 0.93111 0.93945 1.22531 1.05031 0.97874 0.95707 1.23625 1.03453 0.94323 0.99002 1.17067 0.78905 0.85334 0.80659 1.90702 1.46034 1.33076 1.72114 1.46048 1.51244 1.15948 1.21394 1.20385 0.95022 0.84364 0.90389 1.22121 1.00751 0.97450 1.00549 1.22309 0.97059 0.98685 0.99569 1.21120 0.93699 0.95103 0.89142 1.44484 1.07745 1.79234 1.02606 1.18938 0.93728 1.40566 0.83924 0.91827 1.25754 0.98321 1.00758 0.97455 1.69931 1.12964 1.50386 1.26494 0.86073 0.78601 0.79193 0.79410 1.21401 1.23413 1.19900 1.21143 0.83563 0.95139 0.98593 1.22239 0.98772 1.00727 0.94689 1.74177 1.19461 1.00415 1.10917 1.84741 1.50974 1.34888 1.24245 0.92971 0.88552 0.91974 0.91824 0.89022 0.92534 0.91897 0.88710 0.92168 0.79267 0.75528 0.91015 0.90372 0.92123 0.91043 0.90892 0.93999 0.96999 0.92919 0.91370 0.95286 0.89849 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.36 71.98 0.60 -0.88 16 2 C 0.02 0.20 0.94 -52.93 -0.05 0.15 16 3 C -0.15 -1.41 8.07 71.98 0.58 -0.83 16 4 C -0.14 -1.14 8.36 71.98 0.60 -0.54 16 5 C -0.01 -0.17 5.76 25.01 0.14 -0.03 16 6 C -0.19 -4.39 10.40 22.60 0.24 -4.15 16 7 C -0.05 -1.35 7.19 42.96 0.31 -1.05 16 8 C 0.60 19.58 7.27 86.93 0.63 20.21 16 9 O -0.54 -19.73 13.17 -3.67 -0.05 -19.78 16 10 N -0.69 -21.53 4.10 -425.19 -1.74 -23.27 16 11 C 0.18 5.67 0.66 3.63 0.00 5.67 16 12 C -0.15 -3.93 8.40 71.98 0.60 -3.33 16 13 C -0.14 -5.23 4.67 30.67 0.14 -5.09 16 14 C 0.13 6.25 3.94 86.36 0.34 6.59 16 15 N -0.62 -29.54 2.77 -699.03 -1.94 -31.48 16 16 C -0.24 -13.89 10.03 84.03 0.84 -13.04 16 17 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 18 C -0.03 -1.67 5.23 84.86 0.44 -1.23 16 19 N -0.95 -60.89 13.97 21.65 0.30 -60.59 16 20 Si 0.94 49.78 24.35 68.60 1.67 51.45 16 21 H -0.29 -14.93 6.62 99.48 0.66 -14.27 16 22 H -0.31 -16.19 7.11 99.48 0.71 -15.49 16 23 H -0.27 -14.37 6.64 99.48 0.66 -13.71 16 24 C 0.14 5.22 6.24 86.38 0.54 5.76 16 25 C -0.13 -3.64 4.96 30.69 0.15 -3.48 16 26 N -0.35 -9.95 11.84 -49.50 -0.59 -10.54 16 27 O 0.13 3.05 10.65 71.92 0.77 3.81 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.68 8.03 -2.39 -0.02 0.66 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.55 8.02 -2.39 -0.02 0.53 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.41 11.95 7.03 -92.71 -0.65 11.30 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.79 6.18 -2.38 -0.01 1.77 16 42 H 0.07 2.82 6.19 -2.38 -0.01 2.81 16 43 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.04 2.18 4.49 -2.39 -0.01 2.17 16 45 H 0.01 0.58 6.67 -2.39 -0.02 0.56 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 47 H 0.07 2.52 7.93 -2.38 -0.02 2.50 16 48 H 0.03 1.04 6.94 -2.39 -0.02 1.02 16 49 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 50 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -73.12 385.31 4.74 -68.37 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.19 Total: 17.28 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.12 Total: 4.73 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -3.96 Total: -125.87 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.72 Total: -15.97 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.67 Total: 51.45 kcal Total: -73.12 4.74 -68.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045500590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.486 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds