Wall clock time and date at job start Tue Mar 31 2020 19:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.67265 * 2 1 4 4 O 1.21287 * 120.00392 * 118.54301 * 3 2 1 5 5 N 1.34985 * 120.00174 * 298.54804 * 3 2 1 6 6 C 1.44771 * 120.00671 * 176.01783 * 5 3 2 7 7 C 1.51414 * 113.21028 * 267.44372 * 6 5 3 8 8 C 1.51222 * 114.17650 * 295.55615 * 7 6 5 9 9 H 1.09690 * 110.74123 * 179.01044 * 8 7 6 10 10 C 1.54117 * 108.49621 * 301.03765 * 8 7 6 11 11 C 1.54007 * 104.76315 * 92.30138 * 10 8 7 12 12 C 1.52088 * 105.53703 * 11.91580 * 11 10 8 13 13 H 1.09401 * 108.29391 * 122.79946 * 12 11 10 14 14 C 1.49283 * 120.00016 * 355.60024 * 5 3 2 15 15 N 1.47744 * 109.53809 * 4.99306 * 12 11 10 16 16 C 1.37125 * 127.15153 * 159.07361 * 15 12 11 17 17 H 1.07997 * 120.00599 * 162.94507 * 16 15 12 18 18 C 1.38814 * 119.99490 * 342.94439 * 16 15 12 19 19 N 1.31622 * 120.00073 * 1.56330 * 18 16 15 20 20 Si 1.86803 * 119.99747 * 181.56521 * 18 16 15 21 21 H 1.48499 * 109.46710 * 89.99885 * 20 18 16 22 22 H 1.48502 * 109.47056 * 209.99618 * 20 18 16 23 23 H 1.48493 * 109.47104 * 330.00002 * 20 18 16 24 24 C 1.53342 * 109.70266 * 120.51372 * 2 1 3 25 25 C 1.52912 * 108.68816 * 52.23394 * 24 2 1 26 26 N 1.45758 * 110.49096 * 50.72104 * 25 24 2 27 27 C 1.33353 * 124.10858 * 340.96757 * 26 25 24 28 28 O 1.21284 * 118.24442 * 182.17603 * 27 26 25 29 29 C 1.50177 * 123.50830 * 2.19861 * 27 26 25 30 30 H 1.08998 * 109.46321 * 62.19893 * 1 2 3 31 31 H 1.08997 * 109.46824 * 182.19674 * 1 2 3 32 32 H 1.08994 * 109.47051 * 302.20014 * 1 2 3 33 33 H 1.09387 * 108.37207 * 27.85927 * 6 5 3 34 34 H 1.08875 * 109.22979 * 145.40948 * 6 5 3 35 35 H 1.09168 * 108.80018 * 57.21820 * 7 6 5 36 36 H 1.09299 * 108.50288 * 174.36790 * 7 6 5 37 37 H 1.09355 * 110.58947 * 211.35170 * 10 8 7 38 38 H 1.09289 * 110.71450 * 333.06717 * 10 8 7 39 39 H 1.09063 * 110.62900 * 252.32571 * 11 10 8 40 40 H 1.09269 * 110.26873 * 130.85459 * 11 10 8 41 41 H 1.09123 * 109.54636 * 256.00366 * 14 5 3 42 42 H 1.09132 * 109.53177 * 15.67535 * 14 5 3 43 43 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.60669 * 171.97594 * 24 2 1 45 45 H 1.08997 * 109.60880 * 292.46601 * 24 2 1 46 46 H 1.09003 * 109.28305 * 290.42072 * 25 24 2 47 47 H 1.08997 * 109.14479 * 170.93554 * 25 24 2 48 48 H 0.97005 * 117.94628 * 160.94279 * 26 25 24 49 49 H 1.08999 * 109.39671 * 222.29391 * 29 27 26 50 50 H 1.08990 * 109.33105 * 102.50467 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7141 1.8212 0.9227 5 7 1.7385 2.2426 -1.0269 6 6 2.1523 3.6294 -0.9867 7 6 1.0997 4.5495 -0.4053 8 6 -0.1686 4.6354 -1.2244 9 1 -0.8966 5.3010 -0.7446 10 6 0.1937 5.1394 -2.6351 11 6 0.4247 3.8604 -3.4614 12 6 -0.0988 2.7201 -2.6020 13 1 -0.8654 2.1854 -3.1706 14 6 0.9895 1.7213 -2.2082 15 7 -0.7271 3.2686 -1.3825 16 6 -1.6413 2.6474 -0.5708 17 1 -1.8225 3.0234 0.4252 18 6 -2.3339 1.5353 -1.0296 19 7 -2.0909 1.0586 -2.2321 20 14 -3.6109 0.7155 0.0598 21 1 -4.9390 1.3339 -0.1829 22 1 -3.6745 -0.7340 -0.2569 23 1 -3.2343 0.8948 1.4849 24 6 2.0470 -0.7330 1.2437 25 6 1.3770 -2.1055 1.3174 26 7 1.5043 -2.8044 0.0446 27 6 1.7817 -2.2043 -1.1135 28 8 1.8236 -2.8845 -2.1168 29 6 2.0455 -0.7315 -1.2418 30 1 -0.3632 0.4793 -0.9091 31 1 -0.3633 -1.0269 0.0394 32 1 -0.3633 0.5476 0.8696 33 1 3.0546 3.7023 -0.3726 34 1 2.4012 3.9586 -1.9942 35 1 0.8461 4.2040 0.5987 36 1 1.5256 5.5523 -0.3179 37 1 -0.6281 5.7245 -3.0572 38 1 1.1011 5.7478 -2.6070 39 1 1.4863 3.7252 -3.6714 40 1 -0.1322 3.9106 -4.4002 41 1 1.6772 1.5812 -3.0438 42 1 0.5325 0.7628 -1.9565 43 1 -2.5752 0.2817 -2.5528 44 1 3.1275 -0.8573 1.1723 45 1 1.8009 -0.1576 2.1361 46 1 0.3207 -1.9782 1.5544 47 1 1.8537 -2.6944 2.1009 48 1 1.3797 -3.7664 0.0397 49 1 1.5355 -0.3481 -2.1256 50 1 3.1179 -0.5644 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045802440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:25 Heat of formation + Delta-G solvation = -17.141507 kcal Electronic energy + Delta-G solvation = -33447.635724 eV Core-core repulsion = 29476.271773 eV Total energy + Delta-G solvation = -3971.363951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.97349 -39.48436 -38.06986 -36.31395 -34.41134 -33.87588 -32.76144 -31.72572 -29.58245 -29.47002 -27.58419 -27.12775 -25.75810 -24.54613 -23.79458 -22.97342 -21.49536 -19.84907 -19.26989 -18.42167 -18.10857 -17.35292 -16.72234 -16.42530 -15.69216 -15.39538 -15.05780 -14.96337 -14.78676 -14.66532 -14.31773 -13.92446 -13.54847 -13.24014 -13.20263 -12.88462 -12.58390 -12.25215 -12.16251 -11.91590 -11.61697 -11.52732 -11.48665 -11.27525 -11.12430 -11.11400 -11.01978 -10.92799 -10.79631 -10.49956 -10.38413 -10.21410 -9.90302 -9.86630 -9.70769 -9.45888 -9.33388 -8.98544 -8.92847 -8.54589 -7.87251 -6.91084 -5.80121 -3.27776 2.85277 3.20500 3.27839 3.35211 3.37378 3.45136 3.69829 4.33452 4.64249 4.83095 4.87258 4.98880 5.19902 5.23780 5.36189 5.41969 5.46853 5.49616 5.58343 5.64537 5.65138 5.75182 5.84297 5.85121 5.93186 5.97531 6.09136 6.13401 6.15354 6.24268 6.27951 6.32337 6.40227 6.44435 6.57163 6.62921 6.63747 6.69413 6.82291 6.89802 7.00726 7.08037 7.27462 7.45279 7.50162 7.58185 7.66183 8.09453 8.23577 8.38847 8.81726 9.06484 9.64406 10.40073 11.18339 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006777 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.485309 B = 4130.905662 C = 5182.010112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C 0.533 3.467 4 O -0.565 6.565 5 N -0.575 5.575 6 C 0.130 3.870 7 C -0.143 4.143 8 C 0.153 3.847 9 H 0.057 0.943 10 C -0.126 4.126 11 C -0.125 4.125 12 C 0.126 3.874 13 H 0.135 0.865 14 C 0.080 3.920 15 N -0.574 5.574 16 C -0.201 4.201 17 H 0.073 0.927 18 C -0.001 4.001 19 N -0.918 5.918 20 Si 0.894 3.106 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.281 1.281 24 C -0.110 4.110 25 C 0.109 3.891 26 N -0.719 5.719 27 C 0.531 3.469 28 O -0.561 6.561 29 C -0.139 4.139 30 H 0.143 0.857 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.115 0.885 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.396 0.604 49 H 0.123 0.877 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 -0.192 2.121 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.080 4.080 3 C 0.321 3.679 4 O -0.446 6.446 5 N -0.305 5.305 6 C 0.006 3.994 7 C -0.183 4.183 8 C 0.045 3.955 9 H 0.075 0.925 10 C -0.164 4.164 11 C -0.163 4.163 12 C 0.018 3.982 13 H 0.152 0.848 14 C -0.043 4.043 15 N -0.296 5.296 16 C -0.329 4.329 17 H 0.091 0.909 18 C -0.195 4.195 19 N -0.567 5.567 20 Si 0.725 3.275 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.206 1.206 24 C -0.148 4.148 25 C -0.015 4.015 26 N -0.371 5.371 27 C 0.318 3.682 28 O -0.440 6.440 29 C -0.178 4.178 30 H 0.161 0.839 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.132 0.868 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.231 0.769 49 H 0.140 0.860 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.044 -0.246 2.096 7.353 hybrid contribution -0.730 -0.722 0.805 1.305 sum 6.314 -0.969 2.901 7.016 Atomic orbital electron populations 1.22780 0.89712 1.02047 1.08673 1.20823 0.99517 0.92526 0.95129 1.20182 0.79053 0.87062 0.81622 1.90594 1.40402 1.77641 1.35931 1.47906 1.54406 1.08894 1.19322 1.20480 0.96616 0.81586 1.00729 1.21919 0.97656 0.97691 1.01059 1.21075 0.92562 0.88722 0.93094 0.92534 1.22474 1.00013 0.97072 0.96874 1.22148 0.99547 0.96067 0.98575 1.21628 0.94595 0.92309 0.89624 0.84802 1.23746 0.93445 1.01730 0.85332 1.44776 1.47180 1.09708 1.27933 1.18955 1.11341 1.08486 0.94148 0.90942 1.24741 0.98822 0.99531 0.96454 1.69418 1.44011 1.26343 1.16907 0.86395 0.82423 0.78849 0.79869 1.21552 1.21370 1.20615 1.21711 1.00309 0.94056 0.98757 1.21465 1.01508 0.93716 0.84824 1.45442 1.72234 1.11454 1.07999 1.20033 0.75097 0.90528 0.82517 1.90732 1.52693 1.65250 1.35356 1.22180 1.03765 0.91198 1.00675 0.83929 0.93412 0.91954 0.91783 0.91734 0.92609 0.93005 0.92535 0.92441 0.92831 0.92357 0.94018 0.86801 0.93226 0.91025 0.89015 0.91035 0.90647 0.76935 0.85950 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 5.76 37.16 0.21 -3.13 16 2 C -0.08 -1.30 0.49 -155.45 -0.08 -1.37 16 3 C 0.53 10.18 6.46 -10.89 -0.07 10.11 16 4 O -0.57 -11.93 15.35 5.55 0.09 -11.85 16 5 N -0.58 -10.59 2.58 -173.50 -0.45 -11.04 16 6 C 0.13 2.22 5.05 -5.77 -0.03 2.20 16 7 C -0.14 -2.48 5.03 -28.43 -0.14 -2.62 16 8 C 0.15 2.82 3.82 -67.14 -0.26 2.57 16 9 H 0.06 1.07 8.20 -51.54 -0.42 0.65 16 10 C -0.13 -1.99 5.99 -25.62 -0.15 -2.14 16 11 C -0.12 -2.07 5.73 -26.67 -0.15 -2.23 16 12 C 0.13 2.49 2.32 -67.78 -0.16 2.33 16 13 H 0.14 3.10 5.40 -51.70 -0.28 2.82 16 14 C 0.08 1.49 3.70 -2.56 -0.01 1.48 16 15 N -0.57 -12.29 2.37 -156.14 -0.37 -12.66 16 16 C -0.20 -4.78 9.18 -14.97 -0.14 -4.92 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C 0.00 -0.02 3.22 -17.43 -0.06 -0.07 16 19 N -0.92 -22.28 8.97 55.49 0.50 -21.78 16 20 Si 0.89 20.01 29.09 -169.99 -4.94 15.07 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.11 -1.58 4.36 -26.60 -0.12 -1.69 16 25 C 0.11 1.30 6.38 -4.49 -0.03 1.27 16 26 N -0.72 -9.70 5.25 -61.39 -0.32 -10.02 16 27 C 0.53 8.87 7.18 -11.87 -0.09 8.79 16 28 O -0.56 -11.20 17.78 5.55 0.10 -11.10 16 29 C -0.14 -2.26 4.27 -28.10 -0.12 -2.38 16 30 H 0.14 3.00 1.39 -51.93 -0.07 2.93 16 31 H 0.05 0.87 5.83 -51.93 -0.30 0.57 16 32 H 0.06 1.27 8.02 -51.93 -0.42 0.85 16 33 H 0.06 1.12 7.23 -51.71 -0.37 0.75 16 34 H 0.06 1.00 5.54 -52.00 -0.29 0.72 16 35 H 0.06 1.12 8.16 -51.83 -0.42 0.69 16 36 H 0.05 0.77 8.15 -51.76 -0.42 0.35 16 37 H 0.06 0.88 8.17 -51.73 -0.42 0.46 16 38 H 0.06 0.79 7.69 -51.77 -0.40 0.39 16 39 H 0.05 0.80 6.47 -51.89 -0.34 0.47 16 40 H 0.06 0.94 8.16 -51.78 -0.42 0.52 16 41 H 0.04 0.70 7.82 -51.86 -0.41 0.30 16 42 H 0.11 2.27 2.12 -51.85 -0.11 2.16 16 43 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 44 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 45 H 0.09 1.36 7.87 -51.93 -0.41 0.95 16 46 H 0.07 0.88 6.82 -51.93 -0.35 0.52 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.40 4.64 8.80 -40.82 -0.36 4.28 16 49 H 0.12 2.13 4.77 -51.93 -0.25 1.88 16 50 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -27.90 348.76 -8.80 -36.70 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.27 Total: 13.24 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.38 Total: 8.18 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.64 Total: -55.50 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.18 Total: -22.95 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.94 Total: 15.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.90 -8.80 -36.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045802440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.561 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds