Wall clock time and date at job start Tue Mar 31 2020 19:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.67265 * 2 1 4 4 O 1.21287 * 120.00392 * 118.54301 * 3 2 1 5 5 N 1.34985 * 120.00174 * 298.54804 * 3 2 1 6 6 C 1.44771 * 120.00671 * 176.01783 * 5 3 2 7 7 C 1.51414 * 113.21028 * 267.44372 * 6 5 3 8 8 C 1.51222 * 114.17650 * 295.55615 * 7 6 5 9 9 H 1.09690 * 110.74123 * 179.01044 * 8 7 6 10 10 C 1.54117 * 108.49621 * 301.03765 * 8 7 6 11 11 C 1.54007 * 104.76315 * 92.30138 * 10 8 7 12 12 C 1.52088 * 105.53703 * 11.91580 * 11 10 8 13 13 H 1.09401 * 108.29391 * 122.79946 * 12 11 10 14 14 C 1.49283 * 120.00016 * 355.60024 * 5 3 2 15 15 N 1.47744 * 109.53809 * 4.99306 * 12 11 10 16 16 C 1.37125 * 127.15153 * 159.07361 * 15 12 11 17 17 H 1.07997 * 120.00599 * 162.94507 * 16 15 12 18 18 C 1.38814 * 119.99490 * 342.94439 * 16 15 12 19 19 N 1.31622 * 120.00073 * 1.56330 * 18 16 15 20 20 Si 1.86803 * 119.99747 * 181.56521 * 18 16 15 21 21 H 1.48499 * 109.46710 * 89.99885 * 20 18 16 22 22 H 1.48502 * 109.47056 * 209.99618 * 20 18 16 23 23 H 1.48493 * 109.47104 * 330.00002 * 20 18 16 24 24 C 1.53342 * 109.70266 * 120.51372 * 2 1 3 25 25 C 1.52912 * 108.68816 * 52.23394 * 24 2 1 26 26 N 1.45758 * 110.49096 * 50.72104 * 25 24 2 27 27 C 1.33353 * 124.10858 * 340.96757 * 26 25 24 28 28 O 1.21284 * 118.24442 * 182.17603 * 27 26 25 29 29 C 1.50177 * 123.50830 * 2.19861 * 27 26 25 30 30 H 1.08998 * 109.46321 * 62.19893 * 1 2 3 31 31 H 1.08997 * 109.46824 * 182.19674 * 1 2 3 32 32 H 1.08994 * 109.47051 * 302.20014 * 1 2 3 33 33 H 1.09387 * 108.37207 * 27.85927 * 6 5 3 34 34 H 1.08875 * 109.22979 * 145.40948 * 6 5 3 35 35 H 1.09168 * 108.80018 * 57.21820 * 7 6 5 36 36 H 1.09299 * 108.50288 * 174.36790 * 7 6 5 37 37 H 1.09355 * 110.58947 * 211.35170 * 10 8 7 38 38 H 1.09289 * 110.71450 * 333.06717 * 10 8 7 39 39 H 1.09063 * 110.62900 * 252.32571 * 11 10 8 40 40 H 1.09269 * 110.26873 * 130.85459 * 11 10 8 41 41 H 1.09123 * 109.54636 * 256.00366 * 14 5 3 42 42 H 1.09132 * 109.53177 * 15.67535 * 14 5 3 43 43 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.60669 * 171.97594 * 24 2 1 45 45 H 1.08997 * 109.60880 * 292.46601 * 24 2 1 46 46 H 1.09003 * 109.28305 * 290.42072 * 25 24 2 47 47 H 1.08997 * 109.14479 * 170.93554 * 25 24 2 48 48 H 0.97005 * 117.94628 * 160.94279 * 26 25 24 49 49 H 1.08999 * 109.39671 * 222.29391 * 29 27 26 50 50 H 1.08990 * 109.33105 * 102.50467 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7141 1.8212 0.9227 5 7 1.7385 2.2426 -1.0269 6 6 2.1523 3.6294 -0.9867 7 6 1.0997 4.5495 -0.4053 8 6 -0.1686 4.6354 -1.2244 9 1 -0.8966 5.3010 -0.7446 10 6 0.1937 5.1394 -2.6351 11 6 0.4247 3.8604 -3.4614 12 6 -0.0988 2.7201 -2.6020 13 1 -0.8654 2.1854 -3.1706 14 6 0.9895 1.7213 -2.2082 15 7 -0.7271 3.2686 -1.3825 16 6 -1.6413 2.6474 -0.5708 17 1 -1.8225 3.0234 0.4252 18 6 -2.3339 1.5353 -1.0296 19 7 -2.0909 1.0586 -2.2321 20 14 -3.6109 0.7155 0.0598 21 1 -4.9390 1.3339 -0.1829 22 1 -3.6745 -0.7340 -0.2569 23 1 -3.2343 0.8948 1.4849 24 6 2.0470 -0.7330 1.2437 25 6 1.3770 -2.1055 1.3174 26 7 1.5043 -2.8044 0.0446 27 6 1.7817 -2.2043 -1.1135 28 8 1.8236 -2.8845 -2.1168 29 6 2.0455 -0.7315 -1.2418 30 1 -0.3632 0.4793 -0.9091 31 1 -0.3633 -1.0269 0.0394 32 1 -0.3633 0.5476 0.8696 33 1 3.0546 3.7023 -0.3726 34 1 2.4012 3.9586 -1.9942 35 1 0.8461 4.2040 0.5987 36 1 1.5256 5.5523 -0.3179 37 1 -0.6281 5.7245 -3.0572 38 1 1.1011 5.7478 -2.6070 39 1 1.4863 3.7252 -3.6714 40 1 -0.1322 3.9106 -4.4002 41 1 1.6772 1.5812 -3.0438 42 1 0.5325 0.7628 -1.9565 43 1 -2.5752 0.2817 -2.5528 44 1 3.1275 -0.8573 1.1723 45 1 1.8009 -0.1576 2.1361 46 1 0.3207 -1.9782 1.5544 47 1 1.8537 -2.6944 2.1009 48 1 1.3797 -3.7664 0.0397 49 1 1.5355 -0.3481 -2.1256 50 1 3.1179 -0.5644 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045802440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:24 Heat of formation + Delta-G solvation = -34.531672 kcal Electronic energy + Delta-G solvation = -33448.389818 eV Core-core repulsion = 29476.271773 eV Total energy + Delta-G solvation = -3972.118045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.34591 -40.87220 -39.54393 -37.68382 -35.83828 -35.41694 -34.26388 -33.19552 -31.18994 -30.73666 -28.98466 -28.58646 -27.26660 -25.99396 -25.33295 -24.27100 -22.85446 -21.28558 -20.84358 -19.75803 -19.45303 -18.83778 -18.20163 -17.76979 -17.04114 -16.76042 -16.69003 -16.38859 -16.30100 -16.03187 -15.68023 -15.58573 -14.88492 -14.62361 -14.57362 -14.31115 -14.09737 -13.65669 -13.60036 -13.43400 -13.11524 -13.08540 -12.82139 -12.75966 -12.67154 -12.61362 -12.41641 -12.39376 -12.26041 -11.97381 -11.86291 -11.83568 -11.46961 -11.31548 -11.26875 -10.86086 -10.83667 -10.55010 -10.19218 -10.09358 -9.35263 -8.64398 -7.63112 -5.10574 1.43130 1.50330 1.52237 1.54205 1.70971 2.28344 2.30599 2.51979 3.31220 3.42050 3.54421 3.63875 3.75064 3.77116 3.98802 4.11755 4.18213 4.20702 4.26451 4.33671 4.36666 4.43995 4.52565 4.56042 4.61465 4.67350 4.72532 4.78179 4.86668 4.90003 4.92529 4.98335 5.02226 5.11687 5.13398 5.19309 5.25161 5.30045 5.40513 5.55018 5.65481 5.74239 5.81729 5.83026 5.93249 6.02867 6.24967 6.48882 6.62065 7.15757 7.24555 7.34101 7.88060 8.63298 9.30592 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006777 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.485309 B = 4130.905662 C = 5182.010112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C 0.526 3.474 4 O -0.589 6.589 5 N -0.575 5.575 6 C 0.126 3.874 7 C -0.132 4.132 8 C 0.144 3.856 9 H 0.045 0.955 10 C -0.115 4.115 11 C -0.120 4.120 12 C 0.125 3.875 13 H 0.102 0.898 14 C 0.084 3.916 15 N -0.589 5.589 16 C -0.202 4.202 17 H 0.055 0.945 18 C -0.021 4.021 19 N -0.922 5.922 20 Si 0.924 3.076 21 H -0.297 1.297 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.108 4.108 25 C 0.111 3.889 26 N -0.706 5.706 27 C 0.528 3.472 28 O -0.599 6.599 29 C -0.132 4.132 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.019 0.981 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.407 0.593 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 0.160 2.028 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.075 4.075 3 C 0.314 3.686 4 O -0.471 6.471 5 N -0.304 5.304 6 C 0.002 3.998 7 C -0.173 4.173 8 C 0.038 3.962 9 H 0.063 0.937 10 C -0.153 4.153 11 C -0.159 4.159 12 C 0.018 3.982 13 H 0.119 0.881 14 C -0.039 4.039 15 N -0.311 5.311 16 C -0.332 4.332 17 H 0.073 0.927 18 C -0.215 4.215 19 N -0.572 5.572 20 Si 0.755 3.245 21 H -0.225 1.225 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.146 4.146 25 C -0.012 4.012 26 N -0.357 5.357 27 C 0.316 3.684 28 O -0.482 6.482 29 C -0.172 4.172 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.136 0.864 48 H 0.244 0.756 49 H 0.128 0.872 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.655 0.120 2.026 8.890 hybrid contribution -1.271 -0.766 0.891 1.731 sum 7.384 -0.645 2.917 7.966 Atomic orbital electron populations 1.22607 0.91400 1.01561 1.06770 1.20768 0.97896 0.91918 0.96900 1.20545 0.78792 0.87912 0.81341 1.90573 1.41597 1.78243 1.36662 1.47983 1.53829 1.09501 1.19082 1.20618 0.96206 0.80859 1.02076 1.21808 0.97383 0.99372 0.98711 1.21261 0.92596 0.87219 0.95166 0.93664 1.22409 1.01618 0.96952 0.94349 1.22099 1.00854 0.94901 0.98011 1.21553 0.94162 0.93498 0.88985 0.88132 1.23612 0.93576 1.00764 0.85902 1.44891 1.47103 1.11078 1.28069 1.18871 1.11816 1.08611 0.93862 0.92736 1.24946 0.99660 0.99920 0.96955 1.69603 1.44149 1.26106 1.17320 0.85926 0.81117 0.78071 0.79345 1.22516 1.21750 1.20555 1.21712 1.00944 0.94911 0.97050 1.21606 1.01724 0.92979 0.84918 1.45375 1.70530 1.12172 1.07659 1.20065 0.75021 0.90449 0.82853 1.90716 1.54774 1.65887 1.36775 1.22078 1.04378 0.91004 0.99711 0.85469 0.93101 0.94135 0.91993 0.89245 0.96174 0.89864 0.92296 0.89197 0.90507 0.91971 0.91908 0.88240 0.94131 0.90168 0.89598 0.91141 0.86428 0.75610 0.87152 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.39 5.76 71.98 0.41 -5.98 16 2 C -0.07 -2.38 0.49 -52.79 -0.03 -2.40 16 3 C 0.53 19.75 6.46 87.62 0.57 20.32 16 4 O -0.59 -24.50 15.35 -3.05 -0.05 -24.55 16 5 N -0.57 -20.53 2.58 -821.10 -2.12 -22.65 16 6 C 0.13 4.04 5.05 86.18 0.43 4.47 16 7 C -0.13 -4.39 5.03 29.49 0.15 -4.24 16 8 C 0.14 5.15 3.82 44.40 0.17 5.32 16 9 H 0.05 1.70 8.20 -2.02 -0.02 1.68 16 10 C -0.11 -3.28 5.99 31.31 0.19 -3.09 16 11 C -0.12 -3.67 5.73 30.63 0.18 -3.49 16 12 C 0.12 4.85 2.32 44.41 0.10 4.96 16 13 H 0.10 4.68 5.40 -2.17 -0.01 4.67 16 14 C 0.08 3.04 3.70 85.80 0.32 3.36 16 15 N -0.59 -25.21 2.37 -647.92 -1.53 -26.74 16 16 C -0.20 -9.83 9.18 84.00 0.77 -9.06 16 17 H 0.05 2.80 7.83 -2.91 -0.02 2.77 16 18 C -0.02 -1.02 3.22 84.86 0.27 -0.74 16 19 N -0.92 -45.61 8.97 21.65 0.19 -45.42 16 20 Si 0.92 41.68 29.09 68.60 2.00 43.68 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C -0.11 -2.93 4.36 30.68 0.13 -2.79 16 25 C 0.11 2.38 6.38 86.49 0.55 2.93 16 26 N -0.71 -17.67 5.25 -467.32 -2.45 -20.12 16 27 C 0.53 17.12 7.18 87.71 0.63 17.75 16 28 O -0.60 -23.63 17.78 -3.04 -0.05 -23.69 16 29 C -0.13 -4.19 4.27 29.71 0.13 -4.07 16 30 H 0.13 5.43 1.39 -2.39 0.00 5.42 16 31 H 0.05 1.86 5.83 -2.39 -0.01 1.84 16 32 H 0.04 1.68 8.02 -2.39 -0.02 1.66 16 33 H 0.06 2.04 7.23 -2.18 -0.02 2.03 16 34 H 0.09 2.43 5.54 -2.45 -0.01 2.42 16 35 H 0.02 0.79 8.16 -2.30 -0.02 0.77 16 36 H 0.08 2.23 8.15 -2.23 -0.02 2.21 16 37 H 0.06 1.67 8.17 -2.20 -0.02 1.65 16 38 H 0.09 2.03 7.69 -2.23 -0.02 2.01 16 39 H 0.08 1.99 6.47 -2.35 -0.02 1.97 16 40 H 0.06 1.86 8.16 -2.24 -0.02 1.84 16 41 H 0.06 2.00 7.82 -2.32 -0.02 1.98 16 42 H 0.10 3.98 2.12 -2.32 0.00 3.97 16 43 H 0.25 12.44 8.31 -92.71 -0.77 11.67 16 44 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.09 2.46 7.87 -2.39 -0.02 2.44 16 46 H 0.07 1.59 6.82 -2.39 -0.02 1.57 16 47 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.41 8.66 8.80 -92.70 -0.82 7.84 16 49 H 0.11 3.81 4.77 -2.39 -0.01 3.80 16 50 H 0.11 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -61.71 348.76 1.15 -60.56 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.18 Total: 35.70 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 4.98 Total: 23.23 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -5.91 Total: -114.93 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.10 Total: -48.24 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.00 Total: 43.68 kcal Total: -61.71 1.15 -60.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045802440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.028 kcal (2) G-P(sol) polarization free energy of solvation -61.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds