Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.60336 * 2 1 4 4 O 1.21276 * 120.00412 * 236.81107 * 3 2 1 5 5 N 1.34780 * 119.99573 * 56.81204 * 3 2 1 6 6 C 1.44798 * 120.18013 * 353.69916 * 5 3 2 7 7 C 1.51511 * 112.21785 * 264.53314 * 6 5 3 8 8 C 1.51314 * 113.25138 * 285.36440 * 7 6 5 9 9 H 1.09001 * 111.31218 * 185.23782 * 8 7 6 10 10 C 1.54713 * 106.48325 * 307.66732 * 8 7 6 11 11 C 1.54620 * 104.29139 * 88.99121 * 10 8 7 12 12 C 1.50866 * 105.21120 * 11.53936 * 11 10 8 13 13 H 1.09007 * 105.90544 * 122.36517 * 12 11 10 14 14 C 1.49813 * 120.17838 * 173.67668 * 5 3 2 15 15 N 1.48066 * 109.91036 * 8.03430 * 12 11 10 16 16 C 1.36935 * 127.84233 * 155.15544 * 15 12 11 17 17 H 1.07995 * 120.00260 * 179.68390 * 16 15 12 18 18 C 1.38813 * 119.99902 * 359.96495 * 16 15 12 19 19 N 1.31626 * 120.00118 * 359.72039 * 18 16 15 20 20 Si 1.86796 * 120.00165 * 179.71912 * 18 16 15 21 21 H 1.48504 * 109.47190 * 89.99968 * 20 18 16 22 22 H 1.48501 * 109.47410 * 209.99954 * 20 18 16 23 23 H 1.48504 * 109.47325 * 330.00218 * 20 18 16 24 24 C 1.53349 * 109.60463 * 239.67650 * 2 1 3 25 25 C 1.53068 * 108.42421 * 172.54747 * 24 2 1 26 26 C 1.50173 * 109.89198 * 48.90545 * 25 24 2 27 27 O 1.21288 * 118.24611 * 162.44037 * 26 25 24 28 28 N 1.33350 * 123.50925 * 342.41099 * 26 25 24 29 29 C 1.45752 * 124.10380 * 2.22978 * 28 26 25 30 30 H 1.09000 * 109.46973 * 42.98595 * 1 2 3 31 31 H 1.09009 * 109.46742 * 162.98170 * 1 2 3 32 32 H 1.08994 * 109.47480 * 282.97985 * 1 2 3 33 33 H 1.08995 * 108.92975 * 143.82530 * 6 5 3 34 34 H 1.08993 * 108.85727 * 25.19188 * 6 5 3 35 35 H 1.08999 * 108.72483 * 164.39581 * 7 6 5 36 36 H 1.09000 * 108.63026 * 46.27072 * 7 6 5 37 37 H 1.09001 * 110.45277 * 207.83806 * 10 8 7 38 38 H 1.09000 * 110.45516 * 330.38951 * 10 8 7 39 39 H 1.08994 * 110.16862 * 252.68243 * 11 10 8 40 40 H 1.09001 * 110.53474 * 130.58175 * 11 10 8 41 41 H 1.09003 * 109.54155 * 270.57446 * 14 5 3 42 42 H 1.08993 * 109.55073 * 30.76070 * 14 5 3 43 43 H 0.96999 * 119.99758 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.67861 * 292.28554 * 24 2 1 45 45 H 1.09003 * 109.67295 * 52.82102 * 24 2 1 46 46 H 1.09006 * 109.39812 * 169.03161 * 25 24 2 47 47 H 1.09003 * 109.40423 * 288.77027 * 25 24 2 48 48 H 0.97000 * 117.94984 * 182.22402 * 28 26 25 49 49 H 1.09007 * 109.30012 * 220.60627 * 29 28 26 50 50 H 1.08997 * 109.30292 * 101.23496 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7806 1.7981 -0.8789 5 7 1.6597 2.2688 0.9769 6 6 0.6662 1.8651 1.9498 7 6 -0.7268 2.3251 1.5708 8 6 -0.9469 3.8061 1.7892 9 1 -1.9823 4.0857 1.5946 10 6 -0.5292 4.1014 3.2493 11 6 0.9801 4.4242 3.1566 12 6 1.2612 4.5834 1.6830 13 1 1.6748 5.5850 1.5642 14 6 2.2680 3.6352 1.0622 15 7 -0.0094 4.5680 0.9228 16 6 -0.2619 5.1244 -0.3027 17 1 -1.2423 5.0319 -0.7460 18 6 0.7439 5.8023 -0.9777 19 7 1.9388 5.9151 -0.4374 20 14 0.4017 6.5545 -2.6529 21 1 -0.0805 7.9485 -2.4805 22 1 1.6494 6.5584 -3.4581 23 1 -0.6361 5.7548 -3.3520 24 6 2.0445 -0.7294 -1.2470 25 6 3.5633 -0.5529 -1.3184 26 6 4.1788 -0.8805 0.0116 27 8 5.3694 -1.1083 0.0526 28 7 3.4866 -0.9339 1.1501 29 6 2.0465 -0.7286 1.2413 30 1 -0.3633 0.7518 -0.7007 31 1 -0.3633 -0.9828 -0.3008 32 1 -0.3634 0.2308 1.0013 33 1 0.9274 2.2898 2.9190 34 1 0.6707 0.7780 2.0277 35 1 -1.4523 1.7719 2.1671 36 1 -0.8941 2.0979 0.5180 37 1 -1.0812 4.9573 3.6377 38 1 -0.6923 3.2252 3.8768 39 1 1.5662 3.6016 3.5664 40 1 1.2065 5.3494 3.6866 41 1 3.1646 3.5971 1.6809 42 1 2.5293 3.9812 0.0623 43 1 2.6417 6.3884 -0.9093 44 1 1.8010 -1.7896 -1.1787 45 1 1.5833 -0.3030 -2.1379 46 1 3.9697 -1.2191 -2.0795 47 1 3.7960 0.4791 -1.5808 48 1 3.9718 -1.1212 1.9689 49 1 1.8227 -0.1342 2.1272 50 1 1.5493 -1.6950 1.3247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045832189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = 0.007727 kcal Electronic energy + Delta-G solvation = -33058.466299 eV Core-core repulsion = 29087.845995 eV Total energy + Delta-G solvation = -3970.620304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.28141 -39.56080 -38.20402 -36.22559 -34.63284 -33.42737 -32.95949 -31.82209 -30.67657 -29.49111 -27.57345 -26.35235 -25.95819 -24.18057 -24.05847 -23.00182 -21.72135 -20.32390 -19.42894 -19.21486 -17.89582 -17.20673 -17.00073 -16.36741 -15.76387 -15.45038 -15.39754 -14.81245 -14.73729 -14.39986 -14.05876 -13.90675 -13.71403 -13.40863 -13.05618 -12.97489 -12.60823 -12.57416 -12.36970 -12.18964 -12.03283 -11.82231 -11.48439 -11.40371 -11.31438 -11.07677 -10.96243 -10.83159 -10.81084 -10.72486 -10.44134 -10.20633 -9.95385 -9.72477 -9.62903 -9.54201 -9.40648 -9.12890 -8.83140 -8.52456 -7.76622 -6.90933 -5.72819 -3.11001 2.83958 3.17597 3.35045 3.39251 3.44399 3.48018 3.65139 4.41339 4.43891 4.53872 4.72728 4.89253 5.02282 5.11370 5.22098 5.28808 5.36838 5.39283 5.45221 5.48586 5.52324 5.55875 5.62560 5.68395 5.77972 5.81164 5.87450 5.94559 6.04224 6.06763 6.10719 6.20097 6.24692 6.39464 6.42177 6.47436 6.54901 6.67403 6.74864 6.82323 6.93560 7.00926 7.22362 7.39332 7.48186 7.64148 7.85762 8.22564 8.24076 8.35047 8.85825 9.14155 9.74298 10.45878 11.33601 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.005402 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.184264 B = 5182.378485 C = 6103.785871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C 0.520 3.480 4 O -0.537 6.537 5 N -0.583 5.583 6 C 0.090 3.910 7 C -0.158 4.158 8 C 0.151 3.849 9 H 0.062 0.938 10 C -0.130 4.130 11 C -0.124 4.124 12 C 0.141 3.859 13 H 0.099 0.901 14 C 0.126 3.874 15 N -0.577 5.577 16 C -0.211 4.211 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.291 1.291 22 H -0.290 1.290 23 H -0.284 1.284 24 C -0.093 4.093 25 C -0.158 4.158 26 C 0.528 3.472 27 O -0.567 6.567 28 N -0.722 5.722 29 C 0.116 3.884 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.130 0.870 43 H 0.254 0.746 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.147 0.853 48 H 0.397 0.603 49 H 0.088 0.912 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -12.723 7.616 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C 0.306 3.694 4 O -0.415 6.415 5 N -0.315 5.315 6 C -0.033 4.033 7 C -0.198 4.198 8 C 0.043 3.957 9 H 0.080 0.920 10 C -0.169 4.169 11 C -0.162 4.162 12 C 0.035 3.965 13 H 0.117 0.883 14 C 0.005 3.995 15 N -0.299 5.299 16 C -0.339 4.339 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.131 4.131 25 C -0.197 4.197 26 C 0.316 3.684 27 O -0.446 6.446 28 N -0.374 5.374 29 C -0.009 4.009 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.147 0.853 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.165 0.835 48 H 0.232 0.768 49 H 0.106 0.894 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.439 -12.379 6.740 14.777 hybrid contribution -0.184 0.251 -0.424 0.527 sum -4.624 -12.127 6.315 14.434 Atomic orbital electron populations 1.22385 0.91424 1.02837 1.04330 1.21132 0.98102 0.94337 0.96677 1.20051 0.81253 0.86389 0.81709 1.90486 1.37726 1.77404 1.35919 1.48409 1.39294 1.16007 1.27746 1.21498 0.89381 0.98799 0.93667 1.22283 0.95691 0.99669 1.02205 1.21127 0.94656 0.90081 0.89862 0.92020 1.22737 0.96410 1.00072 0.97708 1.22032 0.95883 1.00069 0.98218 1.20378 0.87953 1.01364 0.86834 0.88341 1.23201 0.93190 0.77584 1.05534 1.44933 1.05775 1.61292 1.17942 1.18932 0.96531 1.26570 0.91878 0.90463 1.24665 0.95670 1.01190 0.98700 1.69690 1.02148 1.46587 1.38114 0.86096 0.76980 0.78885 0.83627 1.21801 1.21630 1.20988 1.21488 0.95187 0.99295 0.97171 1.22166 0.95477 1.08286 0.93741 1.20353 0.86717 0.74804 0.86501 1.90711 1.15953 1.50613 1.87320 1.45410 1.08775 1.73121 1.10121 1.21690 0.80824 1.00213 0.98164 0.90802 0.91876 0.89936 0.90326 0.90954 0.92735 0.91402 0.92442 0.92244 0.92495 0.92300 0.95363 0.85265 0.93565 0.91249 0.90028 0.89143 0.83542 0.76842 0.89371 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 6.92 37.15 0.26 -1.43 16 2 C -0.10 -1.29 0.50 -155.52 -0.08 -1.37 16 3 C 0.52 9.49 5.79 -10.98 -0.06 9.43 16 4 O -0.54 -12.04 12.69 5.56 0.07 -11.97 16 5 N -0.58 -10.53 2.86 -174.01 -0.50 -11.03 16 6 C 0.09 1.26 3.99 -5.71 -0.02 1.24 16 7 C -0.16 -2.30 3.56 -28.33 -0.10 -2.40 16 8 C 0.15 2.64 4.08 -66.69 -0.27 2.37 16 9 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.13 -1.94 6.04 -24.98 -0.15 -2.10 16 11 C -0.12 -2.06 5.80 -26.95 -0.16 -2.21 16 12 C 0.14 3.00 1.92 -68.85 -0.13 2.87 16 13 H 0.10 2.49 6.12 -51.93 -0.32 2.18 16 14 C 0.13 2.74 5.70 -2.91 -0.02 2.72 16 15 N -0.58 -12.94 2.70 -157.28 -0.42 -13.37 16 16 C -0.21 -5.44 10.40 -15.06 -0.16 -5.60 16 17 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 19 N -0.92 -25.14 8.14 55.49 0.45 -24.69 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.09 -1.20 4.65 -26.52 -0.12 -1.32 16 25 C -0.16 -2.43 5.41 -28.10 -0.15 -2.58 16 26 C 0.53 8.68 7.44 -11.87 -0.09 8.59 16 27 O -0.57 -11.36 17.78 5.55 0.10 -11.26 16 28 N -0.72 -9.34 5.35 -61.39 -0.33 -9.67 16 29 C 0.12 1.22 5.47 -4.49 -0.02 1.20 16 30 H 0.07 1.01 6.95 -51.93 -0.36 0.65 16 31 H 0.06 0.54 8.03 -51.92 -0.42 0.12 16 32 H 0.08 0.82 3.99 -51.93 -0.21 0.61 16 33 H 0.08 1.07 3.92 -51.93 -0.20 0.87 16 34 H 0.07 0.79 2.58 -51.93 -0.13 0.66 16 35 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.07 1.12 5.79 -51.93 -0.30 0.82 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.72 7.38 -51.93 -0.38 0.33 16 39 H 0.06 0.85 6.13 -51.93 -0.32 0.53 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.13 3.45 5.24 -51.93 -0.27 3.18 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.15 2.75 5.21 -51.94 -0.27 2.48 16 48 H 0.40 4.55 8.80 -40.82 -0.36 4.20 16 49 H 0.09 0.86 5.26 -51.92 -0.27 0.59 16 50 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -32.11 348.30 -8.95 -41.06 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.17 Total: 9.64 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.38 Total: 9.14 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.80 Total: -58.76 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.11 -8.95 -41.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045832189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.069 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds