Wall clock time and date at job start Tue Mar 31 2020 19:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.60336 * 2 1 4 4 O 1.21276 * 120.00412 * 236.81107 * 3 2 1 5 5 N 1.34780 * 119.99573 * 56.81204 * 3 2 1 6 6 C 1.44798 * 120.18013 * 353.69916 * 5 3 2 7 7 C 1.51511 * 112.21785 * 264.53314 * 6 5 3 8 8 C 1.51314 * 113.25138 * 285.36440 * 7 6 5 9 9 H 1.09001 * 111.31218 * 185.23782 * 8 7 6 10 10 C 1.54713 * 106.48325 * 307.66732 * 8 7 6 11 11 C 1.54620 * 104.29139 * 88.99121 * 10 8 7 12 12 C 1.50866 * 105.21120 * 11.53936 * 11 10 8 13 13 H 1.09007 * 105.90544 * 122.36517 * 12 11 10 14 14 C 1.49813 * 120.17838 * 173.67668 * 5 3 2 15 15 N 1.48066 * 109.91036 * 8.03430 * 12 11 10 16 16 C 1.36935 * 127.84233 * 155.15544 * 15 12 11 17 17 H 1.07995 * 120.00260 * 179.68390 * 16 15 12 18 18 C 1.38813 * 119.99902 * 359.96495 * 16 15 12 19 19 N 1.31626 * 120.00118 * 359.72039 * 18 16 15 20 20 Si 1.86796 * 120.00165 * 179.71912 * 18 16 15 21 21 H 1.48504 * 109.47190 * 89.99968 * 20 18 16 22 22 H 1.48501 * 109.47410 * 209.99954 * 20 18 16 23 23 H 1.48504 * 109.47325 * 330.00218 * 20 18 16 24 24 C 1.53349 * 109.60463 * 239.67650 * 2 1 3 25 25 C 1.53068 * 108.42421 * 172.54747 * 24 2 1 26 26 C 1.50173 * 109.89198 * 48.90545 * 25 24 2 27 27 O 1.21288 * 118.24611 * 162.44037 * 26 25 24 28 28 N 1.33350 * 123.50925 * 342.41099 * 26 25 24 29 29 C 1.45752 * 124.10380 * 2.22978 * 28 26 25 30 30 H 1.09000 * 109.46973 * 42.98595 * 1 2 3 31 31 H 1.09009 * 109.46742 * 162.98170 * 1 2 3 32 32 H 1.08994 * 109.47480 * 282.97985 * 1 2 3 33 33 H 1.08995 * 108.92975 * 143.82530 * 6 5 3 34 34 H 1.08993 * 108.85727 * 25.19188 * 6 5 3 35 35 H 1.08999 * 108.72483 * 164.39581 * 7 6 5 36 36 H 1.09000 * 108.63026 * 46.27072 * 7 6 5 37 37 H 1.09001 * 110.45277 * 207.83806 * 10 8 7 38 38 H 1.09000 * 110.45516 * 330.38951 * 10 8 7 39 39 H 1.08994 * 110.16862 * 252.68243 * 11 10 8 40 40 H 1.09001 * 110.53474 * 130.58175 * 11 10 8 41 41 H 1.09003 * 109.54155 * 270.57446 * 14 5 3 42 42 H 1.08993 * 109.55073 * 30.76070 * 14 5 3 43 43 H 0.96999 * 119.99758 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.67861 * 292.28554 * 24 2 1 45 45 H 1.09003 * 109.67295 * 52.82102 * 24 2 1 46 46 H 1.09006 * 109.39812 * 169.03161 * 25 24 2 47 47 H 1.09003 * 109.40423 * 288.77027 * 25 24 2 48 48 H 0.97000 * 117.94984 * 182.22402 * 28 26 25 49 49 H 1.09007 * 109.30012 * 220.60627 * 29 28 26 50 50 H 1.08997 * 109.30292 * 101.23496 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7806 1.7981 -0.8789 5 7 1.6597 2.2688 0.9769 6 6 0.6662 1.8651 1.9498 7 6 -0.7268 2.3251 1.5708 8 6 -0.9469 3.8061 1.7892 9 1 -1.9823 4.0857 1.5946 10 6 -0.5292 4.1014 3.2493 11 6 0.9801 4.4242 3.1566 12 6 1.2612 4.5834 1.6830 13 1 1.6748 5.5850 1.5642 14 6 2.2680 3.6352 1.0622 15 7 -0.0094 4.5680 0.9228 16 6 -0.2619 5.1244 -0.3027 17 1 -1.2423 5.0319 -0.7460 18 6 0.7439 5.8023 -0.9777 19 7 1.9388 5.9151 -0.4374 20 14 0.4017 6.5545 -2.6529 21 1 -0.0805 7.9485 -2.4805 22 1 1.6494 6.5584 -3.4581 23 1 -0.6361 5.7548 -3.3520 24 6 2.0445 -0.7294 -1.2470 25 6 3.5633 -0.5529 -1.3184 26 6 4.1788 -0.8805 0.0116 27 8 5.3694 -1.1083 0.0526 28 7 3.4866 -0.9339 1.1501 29 6 2.0465 -0.7286 1.2413 30 1 -0.3633 0.7518 -0.7007 31 1 -0.3633 -0.9828 -0.3008 32 1 -0.3634 0.2308 1.0013 33 1 0.9274 2.2898 2.9190 34 1 0.6707 0.7780 2.0277 35 1 -1.4523 1.7719 2.1671 36 1 -0.8941 2.0979 0.5180 37 1 -1.0812 4.9573 3.6377 38 1 -0.6923 3.2252 3.8768 39 1 1.5662 3.6016 3.5664 40 1 1.2065 5.3494 3.6866 41 1 3.1646 3.5971 1.6809 42 1 2.5293 3.9812 0.0623 43 1 2.6417 6.3884 -0.9093 44 1 1.8010 -1.7896 -1.1787 45 1 1.5833 -0.3030 -2.1379 46 1 3.9697 -1.2191 -2.0795 47 1 3.7960 0.4791 -1.5808 48 1 3.9718 -1.1212 1.9689 49 1 1.8227 -0.1342 2.1272 50 1 1.5493 -1.6950 1.3247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045832189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:41 Heat of formation + Delta-G solvation = -23.704339 kcal Electronic energy + Delta-G solvation = -33059.494532 eV Core-core repulsion = 29087.845995 eV Total energy + Delta-G solvation = -3971.648537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.50328 -40.90420 -39.60570 -37.51944 -36.06995 -34.82129 -34.41652 -33.26835 -31.85627 -31.24157 -28.93318 -27.49895 -27.26531 -25.80286 -25.23662 -24.32994 -22.91313 -21.59138 -20.99329 -20.66377 -19.15596 -18.71484 -18.24833 -17.70444 -16.97630 -16.77852 -16.77354 -16.53260 -16.05573 -15.84394 -15.59636 -15.21658 -14.93156 -14.55771 -14.49120 -14.19968 -14.05087 -13.73762 -13.68645 -13.46071 -13.31572 -13.07097 -12.94325 -12.93254 -12.66169 -12.59132 -12.49658 -12.38950 -12.12695 -12.02223 -11.94907 -11.55204 -11.44543 -11.36523 -11.20273 -10.89083 -10.69572 -10.66189 -10.22047 -9.92233 -9.25563 -8.75911 -7.74253 -5.09565 1.40377 1.42949 1.49157 1.57312 1.84056 2.25017 2.36090 2.50023 3.35061 3.40781 3.50971 3.64176 3.68763 3.81136 3.95920 4.04910 4.13192 4.18061 4.31364 4.44070 4.44998 4.49871 4.50554 4.61551 4.67436 4.72832 4.81519 4.85421 4.87912 4.94734 4.97053 4.98667 5.08636 5.17056 5.19534 5.26578 5.32894 5.36179 5.40771 5.45381 5.55329 5.68107 5.80220 5.82675 5.93758 6.06061 6.24972 6.36381 6.85087 7.16195 7.17173 7.49717 7.85104 8.56963 9.28253 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.005402 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.184264 B = 5182.378485 C = 6103.785871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C 0.503 3.497 4 O -0.593 6.593 5 N -0.584 5.584 6 C 0.081 3.919 7 C -0.152 4.152 8 C 0.135 3.865 9 H 0.059 0.941 10 C -0.116 4.116 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.044 0.956 14 C 0.132 3.868 15 N -0.599 5.599 16 C -0.206 4.206 17 H 0.077 0.923 18 C -0.063 4.063 19 N -0.933 5.933 20 Si 0.958 3.042 21 H -0.287 1.287 22 H -0.309 1.309 23 H -0.276 1.276 24 C -0.089 4.089 25 C -0.159 4.159 26 C 0.522 3.478 27 O -0.614 6.614 28 N -0.710 5.710 29 C 0.112 3.888 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.237 0.763 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.406 0.594 49 H 0.107 0.893 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -16.556 10.796 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C 0.292 3.708 4 O -0.475 6.475 5 N -0.314 5.314 6 C -0.040 4.040 7 C -0.192 4.192 8 C 0.030 3.970 9 H 0.077 0.923 10 C -0.155 4.155 11 C -0.156 4.156 12 C 0.046 3.954 13 H 0.062 0.938 14 C 0.009 3.991 15 N -0.322 5.322 16 C -0.335 4.335 17 H 0.095 0.905 18 C -0.256 4.256 19 N -0.583 5.583 20 Si 0.790 3.210 21 H -0.214 1.214 22 H -0.237 1.237 23 H -0.201 1.201 24 C -0.127 4.127 25 C -0.198 4.198 26 C 0.311 3.689 27 O -0.498 6.498 28 N -0.361 5.361 29 C -0.011 4.011 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.243 0.757 49 H 0.124 0.876 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.897 -16.240 9.993 20.639 hybrid contribution 0.820 1.482 -1.423 2.212 sum -7.077 -14.758 8.571 18.476 Atomic orbital electron populations 1.22365 0.89022 1.04124 1.04735 1.21175 0.99732 0.90361 0.98261 1.21209 0.80345 0.88640 0.80638 1.90504 1.40063 1.78920 1.38022 1.48409 1.39954 1.14241 1.28815 1.21885 0.87867 1.01494 0.92802 1.22193 0.97266 0.97668 1.02084 1.21497 0.93489 0.91565 0.90495 0.92266 1.22701 0.94218 1.02223 0.96312 1.21948 0.98033 1.01284 0.94324 1.20273 0.87222 0.98260 0.89671 0.93794 1.22596 0.93726 0.80518 1.02275 1.45111 1.07539 1.61971 1.17529 1.19139 0.96004 1.25138 0.93219 0.90550 1.25263 0.96037 1.03078 1.01243 1.69967 1.02370 1.47606 1.38376 0.85358 0.75922 0.78575 0.81187 1.21408 1.23683 1.20145 1.21546 0.92709 1.01601 0.96863 1.22051 0.97909 1.05939 0.93899 1.20476 0.86249 0.74528 0.87619 1.90682 1.17935 1.53060 1.88098 1.45351 1.10047 1.71310 1.09343 1.22038 0.79235 1.02790 0.96995 0.94021 0.88014 0.88015 0.89061 0.86651 0.87392 0.93463 0.92404 0.87453 0.89846 0.92429 0.95855 0.90853 0.95288 0.87048 0.91261 0.88237 0.87599 0.75747 0.87566 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 6.92 71.98 0.50 -1.97 16 2 C -0.09 -2.09 0.50 -52.84 -0.03 -2.11 16 3 C 0.50 18.29 5.79 87.66 0.51 18.79 16 4 O -0.59 -28.40 12.69 -3.02 -0.04 -28.43 16 5 N -0.58 -20.54 2.86 -822.82 -2.36 -22.90 16 6 C 0.08 1.89 3.99 86.21 0.34 2.23 16 7 C -0.15 -3.70 3.56 29.56 0.11 -3.59 16 8 C 0.14 4.35 4.08 44.61 0.18 4.53 16 9 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 10 C -0.12 -2.94 6.04 31.73 0.19 -2.75 16 11 C -0.12 -3.65 5.80 30.45 0.18 -3.47 16 12 C 0.15 6.61 1.92 43.54 0.08 6.70 16 13 H 0.04 2.37 6.12 -2.38 -0.01 2.36 16 14 C 0.13 6.01 5.70 85.27 0.49 6.50 16 15 N -0.60 -27.06 2.70 -651.51 -1.76 -28.82 16 16 C -0.21 -10.93 10.40 84.03 0.87 -10.06 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 19 N -0.93 -55.29 8.14 21.65 0.18 -55.11 16 20 Si 0.96 47.50 29.55 68.60 2.03 49.52 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.31 -16.14 7.11 99.48 0.71 -15.43 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 C -0.09 -2.09 4.65 30.73 0.14 -1.95 16 25 C -0.16 -4.94 5.41 29.71 0.16 -4.78 16 26 C 0.52 16.86 7.44 87.71 0.65 17.51 16 27 O -0.61 -25.05 17.78 -3.05 -0.05 -25.10 16 28 N -0.71 -16.14 5.35 -467.31 -2.50 -18.64 16 29 C 0.11 1.74 5.47 86.49 0.47 2.21 16 30 H 0.04 1.02 6.95 -2.39 -0.02 1.00 16 31 H 0.10 1.02 8.03 -2.38 -0.02 1.00 16 32 H 0.10 1.30 3.99 -2.39 -0.01 1.29 16 33 H 0.09 1.94 3.92 -2.39 -0.01 1.94 16 34 H 0.12 1.70 2.58 -2.39 -0.01 1.70 16 35 H 0.11 1.58 8.13 -2.39 -0.02 1.57 16 36 H 0.05 1.39 5.79 -2.39 -0.01 1.38 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.77 7.38 -2.39 -0.02 1.76 16 39 H 0.08 2.15 6.13 -2.39 -0.01 2.14 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 4.26 5.24 -2.39 -0.01 4.25 16 43 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.11 1.71 8.13 -2.39 -0.02 1.69 16 45 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 47 H 0.11 4.31 5.21 -2.63 -0.01 4.29 16 48 H 0.41 8.01 8.80 -92.71 -0.82 7.19 16 49 H 0.11 1.32 5.26 -2.38 -0.01 1.31 16 50 H 0.13 0.89 8.12 -2.39 -0.02 0.87 16 Total: -1.00 -82.85 348.30 0.99 -81.87 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.18 Total: 22.92 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 5.32 Total: 24.68 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -6.44 Total: -125.46 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.09 Total: -53.53 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -82.85 0.99 -81.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045832189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.163 kcal (2) G-P(sol) polarization free energy of solvation -82.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds