Wall clock time and date at job start Tue Mar 31 2020 19:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.89115 * 2 1 4 4 C 1.34777 * 119.99525 * 303.87682 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 H 1.08997 * 109.20288 * 55.92469 * 6 4 3 8 8 C 1.53292 * 109.20465 * 296.61586 * 6 4 3 9 9 N 1.46787 * 108.50523 * 299.77803 * 8 6 4 10 10 C 1.49418 * 112.09961 * 193.76211 * 9 8 6 11 11 C 1.57033 * 99.32353 * 113.45855 * 10 9 8 12 12 C 1.56485 * 107.13277 * 40.31189 * 11 10 9 13 13 C 1.49514 * 107.60927 * 302.19691 * 9 8 6 14 14 C 1.54376 * 104.43012 * 288.56982 * 13 9 8 15 15 C 1.50161 * 114.92761 * 57.52592 * 13 9 8 16 16 O 1.42803 * 109.20519 * 175.27796 * 6 4 3 17 17 C 1.55155 * 111.00115 * 123.88104 * 2 1 3 18 18 C 1.54326 * 102.94282 * 153.61143 * 17 2 1 19 19 N 1.47016 * 107.27134 * 337.80605 * 18 17 2 20 20 C 1.36941 * 125.64886 * 178.98931 * 19 18 17 21 21 H 1.08008 * 119.99835 * 179.97438 * 20 19 18 22 22 C 1.38807 * 120.00228 * 359.96997 * 20 19 18 23 23 N 1.31625 * 119.99727 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00329 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46848 * 60.00051 * 24 22 20 26 26 H 1.48499 * 109.47276 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47065 * 300.00578 * 24 22 20 28 28 C 1.47428 * 108.70279 * 358.93843 * 19 18 17 29 29 H 1.09002 * 109.47097 * 59.30086 * 1 2 3 30 30 H 1.08998 * 109.47375 * 179.30045 * 1 2 3 31 31 H 1.09005 * 109.46954 * 299.30578 * 1 2 3 32 32 H 0.97000 * 120.00580 * 123.88428 * 3 2 1 33 33 H 1.09002 * 109.62652 * 59.48254 * 8 6 4 34 34 H 1.08999 * 109.62810 * 180.02562 * 8 6 4 35 35 H 1.09004 * 111.42972 * 230.97980 * 10 9 8 36 36 H 1.08999 * 111.43259 * 355.93103 * 10 9 8 37 37 H 1.09000 * 118.35088 * 180.88268 * 11 10 9 38 38 H 1.08995 * 114.70019 * 190.06080 * 12 11 10 39 39 H 1.09004 * 114.69392 * 55.82937 * 12 11 10 40 40 H 1.09001 * 114.72213 * 45.65645 * 14 13 9 41 41 H 1.08995 * 114.72043 * 179.97438 * 14 13 9 42 42 H 1.08994 * 109.70513 * 187.22495 * 15 13 9 43 43 H 1.09004 * 109.70458 * 66.61846 * 15 13 9 44 44 H 1.09001 * 110.72081 * 271.96828 * 17 2 1 45 45 H 1.08996 * 110.72401 * 35.07207 * 17 2 1 46 46 H 1.09001 * 109.88606 * 97.22289 * 18 17 2 47 47 H 1.09004 * 109.88150 * 218.38424 * 18 17 2 48 48 H 0.97000 * 119.99649 * 180.02562 * 23 22 20 49 49 H 1.08996 * 110.36787 * 265.28786 * 28 19 18 50 50 H 1.09002 * 110.36421 * 142.96919 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.6848 2.2302 -0.9691 5 8 0.9212 1.8725 -1.8409 6 6 2.2173 3.6399 -0.9657 7 1 3.3068 3.6116 -0.9588 8 6 1.7246 4.3620 0.2936 9 7 0.2570 4.3823 0.2749 10 6 -0.3047 5.3385 1.2763 11 6 -0.9451 6.3857 0.2969 12 6 -1.6045 5.5806 -0.8718 13 6 -0.1699 5.0647 -0.9851 14 6 0.1853 6.5497 -0.7577 15 6 0.3431 4.4376 -2.2494 16 8 1.7723 4.3131 -2.1439 17 6 2.0860 -0.8075 1.2025 18 6 3.4677 -1.2732 0.6969 19 7 3.4279 -1.2424 -0.7724 20 6 4.4652 -1.5659 -1.6059 21 1 4.3348 -1.5113 -2.6766 22 6 5.6842 -1.9640 -1.0746 23 7 5.8430 -2.0310 0.2303 24 14 7.0994 -2.4046 -2.2115 25 1 7.4415 -1.2305 -3.0540 26 1 8.2816 -2.7949 -1.4020 27 1 6.6999 -3.5392 -3.0824 28 6 2.0860 -0.8066 -1.2000 29 1 -0.3633 0.5247 -0.8837 30 1 -0.3634 -1.0275 -0.0125 31 1 -0.3633 0.5030 0.8962 32 1 2.6629 1.6549 0.6973 33 1 2.0723 3.8310 1.1798 34 1 2.1057 5.3832 0.3029 35 1 -1.0612 4.8627 1.9005 36 1 0.4818 5.7887 1.8819 37 1 -1.4447 7.2554 0.7236 38 1 -1.9375 6.1889 -1.7127 39 1 -2.3334 4.8342 -0.5562 40 1 1.1771 6.7224 -0.3397 41 1 -0.0599 7.2096 -1.5898 42 1 0.0913 5.0692 -3.1013 43 1 -0.1032 3.4515 -2.3779 44 1 2.1915 -0.1693 2.0799 45 1 1.4453 -1.6612 1.4232 46 1 4.2425 -0.5984 1.0609 47 1 3.6657 -2.2883 1.0413 48 1 6.6950 -2.3088 0.6016 49 1 1.4531 -1.6707 -1.4022 50 1 2.1568 -0.1721 -2.0834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046501071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:17 Heat of formation + Delta-G solvation = 37.874814 kcal Electronic energy + Delta-G solvation = -31626.208578 eV Core-core repulsion = 27657.230314 eV Total energy + Delta-G solvation = -3968.978264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.41503 -39.87813 -37.97501 -36.40373 -34.19630 -33.62752 -31.85485 -30.21545 -29.55506 -29.00285 -28.54086 -25.81008 -25.59777 -24.72603 -23.87676 -23.41630 -21.10392 -20.56403 -20.13808 -19.15140 -18.75358 -17.17435 -16.83756 -16.53118 -16.08467 -15.84289 -15.32361 -15.04909 -14.70291 -14.58233 -14.28136 -14.05679 -13.69497 -13.34785 -13.26274 -13.04619 -12.93054 -12.61869 -12.22154 -12.12214 -11.89681 -11.82455 -11.73840 -11.66077 -11.57342 -11.34275 -11.21611 -10.86074 -10.83019 -10.66273 -10.48244 -10.32132 -10.27926 -10.09299 -10.00634 -9.82581 -9.61125 -8.96602 -8.60700 -8.52732 -8.38270 -6.75599 -5.66904 -2.98566 3.01234 3.39860 3.44203 3.48074 3.49673 3.55077 3.66124 3.94699 4.07989 4.28598 4.37596 4.54810 4.69626 4.85221 4.88806 4.93580 5.09076 5.19842 5.31276 5.36866 5.37955 5.43475 5.46984 5.47547 5.53023 5.55898 5.59531 5.63917 5.70341 5.72873 5.80401 5.84427 6.03269 6.12573 6.22573 6.27998 6.32513 6.45461 6.47563 6.61056 6.63178 6.79300 6.86779 6.99201 7.23747 7.58531 7.60775 7.83866 8.00482 8.30485 8.68803 9.27863 9.87959 10.54347 11.45040 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.003346 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.594592 B = 8365.448269 C = 8836.043547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.160 3.840 3 N -0.695 5.695 4 C 0.512 3.488 5 O -0.531 6.531 6 C 0.075 3.925 7 H 0.130 0.870 8 C 0.011 3.989 9 N -0.465 5.465 10 C 0.034 3.966 11 C -0.144 4.144 12 C -0.109 4.109 13 C 0.019 3.981 14 C -0.177 4.177 15 C 0.075 3.925 16 O -0.354 6.354 17 C -0.147 4.147 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.221 4.221 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.134 3.866 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.395 0.605 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.251 0.749 49 H 0.024 0.976 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.788 17.794 4.008 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.074 3.926 3 N -0.346 5.346 4 C 0.297 3.703 5 O -0.409 6.409 6 C 0.012 3.988 7 H 0.147 0.853 8 C -0.118 4.118 9 N -0.189 5.189 10 C -0.093 4.093 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.071 4.071 14 C -0.215 4.215 15 C -0.002 4.002 16 O -0.270 6.270 17 C -0.185 4.185 18 C 0.054 3.946 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.574 5.574 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.007 3.993 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.229 0.771 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.041 0.959 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.130 16.888 3.344 22.272 hybrid contribution 1.485 0.669 0.043 1.630 sum -12.645 17.557 3.387 21.900 Atomic orbital electron populations 1.21979 0.94189 1.01670 1.02761 1.21430 0.92710 0.80771 0.97710 1.45762 1.48435 1.11789 1.28595 1.20796 0.81191 0.86847 0.81436 1.90533 1.35606 1.77976 1.36784 1.22173 1.00633 0.89856 0.86090 0.85301 1.23100 0.89368 1.00790 0.98545 1.67233 1.08098 1.41609 1.01950 1.23843 0.99091 0.91776 0.94633 1.24886 0.98043 0.98891 0.94475 1.23273 0.94357 0.98954 0.98073 1.23394 0.98026 0.92189 0.93503 1.24565 0.98718 0.98384 0.99846 1.22118 0.81029 1.02841 0.94181 1.88153 1.22209 1.76348 1.40326 1.23220 1.00405 0.98914 0.96005 1.21138 0.89980 0.99832 0.83697 1.44441 1.07796 1.78915 1.01794 1.19027 0.89384 1.37557 0.88992 0.90678 1.24751 0.97721 1.02074 0.95996 1.69944 1.24154 1.54122 1.09138 0.86215 0.81881 0.78300 0.79494 1.21254 1.21675 1.21244 1.21867 0.87505 0.94830 0.95139 0.90435 0.92405 0.93196 0.77122 0.88668 0.92114 0.89062 0.91114 0.87551 0.88191 0.90470 0.91208 0.88969 0.88700 0.88259 0.91895 0.91039 0.93732 0.93944 0.93879 0.95865 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.52 37.16 0.32 -2.06 16 2 C 0.16 2.89 0.82 -129.67 -0.11 2.78 16 3 N -0.69 -11.40 5.09 -45.63 -0.23 -11.63 16 4 C 0.51 8.54 5.88 -10.98 -0.06 8.48 16 5 O -0.53 -10.31 10.72 -14.46 -0.16 -10.47 16 6 C 0.07 1.03 3.65 -27.73 -0.10 0.93 16 7 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 8 C 0.01 0.12 4.83 -3.73 -0.02 0.10 16 9 N -0.47 -5.25 5.57 -227.97 -1.27 -6.52 16 10 C 0.03 0.30 7.02 -0.23 0.00 0.30 16 11 C -0.14 -1.14 6.40 -98.00 -0.63 -1.76 16 12 C -0.11 -0.94 7.81 -30.36 -0.24 -1.18 16 13 C 0.02 0.21 1.59 -143.65 -0.23 -0.02 16 14 C -0.18 -1.59 7.01 -30.14 -0.21 -1.80 16 15 C 0.07 0.97 6.16 35.74 0.22 1.19 16 16 O -0.35 -5.28 10.48 -55.24 -0.58 -5.86 16 17 C -0.15 -2.64 5.97 -24.90 -0.15 -2.79 16 18 C 0.18 4.23 5.36 -3.07 -0.02 4.21 16 19 N -0.60 -15.60 3.39 -170.07 -0.58 -16.18 16 20 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.93 -27.05 10.31 55.49 0.57 -26.47 16 24 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 C 0.13 2.99 6.17 -2.53 -0.02 2.97 16 29 H 0.08 1.37 6.01 -51.93 -0.31 1.06 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.40 5.80 8.15 -40.82 -0.33 5.47 16 33 H 0.10 0.93 7.77 -51.93 -0.40 0.53 16 34 H 0.06 0.60 5.97 -51.93 -0.31 0.29 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.55 7.73 -51.93 -0.40 0.15 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.70 7.85 -51.93 -0.41 0.29 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.67 6.08 -51.93 -0.32 0.36 16 41 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 1.55 5.61 -51.93 -0.29 1.26 16 44 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 46 H 0.04 1.14 7.38 -51.93 -0.38 0.76 16 47 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 50 H 0.05 1.19 6.86 -51.93 -0.36 0.84 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -32.71 371.45 -11.23 -43.94 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.07 Total: 5.60 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.49 Total: 4.50 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.51 Total: -60.80 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.73 Total: -16.33 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.71 -11.23 -43.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046501071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.810 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds