Wall clock time and date at job start Tue Mar 31 2020 19:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 110.88449 * 2 1 4 4 C 1.34777 * 119.99803 * 56.12078 * 3 2 1 5 5 O 1.21276 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99866 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.20106 * 305.64662 * 6 4 3 8 8 C 1.53294 * 109.20630 * 65.00220 * 6 4 3 9 9 N 1.46784 * 108.49748 * 60.21426 * 8 6 4 10 10 C 1.49426 * 112.10767 * 166.25093 * 9 8 6 11 11 C 1.57023 * 99.32324 * 246.53719 * 10 9 8 12 12 C 1.55450 * 101.36726 * 44.29687 * 11 10 9 13 13 C 1.49506 * 107.61525 * 57.81442 * 9 8 6 14 14 C 1.52878 * 111.06837 * 159.53167 * 13 9 8 15 15 C 1.50164 * 114.92333 * 302.47191 * 13 9 8 16 16 O 1.42797 * 109.20816 * 186.33667 * 6 4 3 17 17 C 1.55160 * 111.00207 * 236.12160 * 2 1 3 18 18 C 1.54325 * 102.94141 * 206.41991 * 17 2 1 19 19 N 1.47022 * 107.26808 * 22.19396 * 18 17 2 20 20 C 1.36943 * 125.64725 * 181.02022 * 19 18 17 21 21 H 1.08002 * 119.99788 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99622 * 0.30349 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99836 * 24 22 20 26 26 H 1.48497 * 109.47267 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47169 * 300.00118 * 24 22 20 28 28 C 1.47427 * 108.70607 * 1.28411 * 19 18 17 29 29 H 1.09001 * 109.47066 * 183.87734 * 1 2 3 30 30 H 1.09001 * 109.47073 * 303.87739 * 1 2 3 31 31 H 1.08994 * 109.47204 * 63.88279 * 1 2 3 32 32 H 0.96995 * 120.00187 * 236.12199 * 3 2 1 33 33 H 1.08996 * 109.63584 * 179.97438 * 8 6 4 34 34 H 1.09006 * 109.62882 * 300.51575 * 8 6 4 35 35 H 1.09006 * 111.42562 * 4.06195 * 10 9 8 36 36 H 1.09001 * 111.43282 * 129.00619 * 10 9 8 37 37 H 1.09005 * 118.87555 * 179.55404 * 11 10 9 38 38 H 1.08998 * 114.72497 * 183.08971 * 12 11 10 39 39 H 1.09004 * 114.72213 * 48.77573 * 12 11 10 40 40 H 1.09006 * 114.69880 * 52.52098 * 14 13 9 41 41 H 1.09007 * 114.70205 * 186.75225 * 14 13 9 42 42 H 1.09002 * 109.70727 * 172.77062 * 15 13 9 43 43 H 1.09001 * 109.70348 * 293.33340 * 15 13 9 44 44 H 1.08996 * 110.71761 * 88.05952 * 17 2 1 45 45 H 1.08996 * 110.87457 * 324.85416 * 17 2 1 46 46 H 1.09000 * 109.87990 * 262.77884 * 18 17 2 47 47 H 1.08991 * 109.88062 * 141.60908 * 18 17 2 48 48 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.36238 * 94.47989 * 28 19 18 50 50 H 1.08998 * 110.36877 * 216.80572 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9690 5 8 0.9210 1.8726 1.8407 6 6 2.2223 3.6381 0.9694 7 1 3.3113 3.6059 0.9380 8 6 1.7036 4.3764 -0.2699 9 7 0.2369 4.4015 -0.2171 10 6 -0.3445 5.3708 -1.1945 11 6 -0.9584 6.4088 -0.1888 12 6 0.1964 6.5572 0.8412 13 6 -0.1585 5.0709 1.0599 14 6 -1.5935 5.5927 0.9855 15 6 0.3811 4.4277 2.3050 16 8 1.8070 4.2993 2.1650 17 6 2.0861 -0.8075 -1.2026 18 6 3.4675 -1.2738 -0.6966 19 7 3.4272 -1.2433 0.7727 20 6 4.4641 -1.5673 1.6065 21 1 4.3333 -1.5128 2.6772 22 6 5.6850 -1.9601 1.0753 23 7 5.8443 -2.0264 -0.2295 24 14 7.1018 -2.3945 2.2125 25 1 6.7071 -3.5308 3.0833 26 1 8.2858 -2.7797 1.4033 27 1 7.4386 -1.2190 3.0551 28 6 2.0836 -0.8123 1.2000 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5728 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 2.6626 1.6549 -0.6974 33 1 2.0881 5.3962 -0.2764 34 1 2.0287 3.8543 -1.1699 35 1 0.4295 5.8253 -1.8129 36 1 -1.1167 4.9045 -1.8064 37 1 -1.4729 7.2844 -0.5848 38 1 -0.0273 7.2084 1.6862 39 1 1.1789 6.7315 0.4026 40 1 -2.3321 4.8521 0.6785 41 1 -1.9051 6.1924 1.8408 42 1 0.1513 5.0504 3.1696 43 1 -0.0663 3.4420 2.4329 44 1 2.1921 -0.1691 -2.0797 45 1 1.4479 -1.6627 -1.4246 46 1 4.2426 -0.5992 -1.0603 47 1 3.6650 -2.2888 -1.0410 48 1 6.6973 -2.3012 -0.6005 49 1 1.4525 -1.6787 1.3980 50 1 2.1516 -0.1809 2.0859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046501072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:22 Heat of formation + Delta-G solvation = 38.205917 kcal Electronic energy + Delta-G solvation = -31617.800647 eV Core-core repulsion = 27648.836740 eV Total energy + Delta-G solvation = -3968.963907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.41414 -39.87720 -37.97033 -36.40378 -34.18953 -33.63055 -31.86047 -30.21568 -29.54919 -29.00283 -28.54300 -25.80610 -25.59078 -24.72056 -23.87786 -23.41447 -21.10697 -20.56483 -20.13117 -19.15199 -18.76328 -17.17102 -16.83567 -16.53479 -16.08029 -15.83959 -15.32572 -15.03266 -14.69951 -14.58333 -14.28374 -14.06564 -13.69626 -13.34600 -13.26557 -13.04369 -12.93119 -12.62610 -12.21999 -12.12018 -11.89020 -11.83862 -11.73912 -11.65732 -11.56941 -11.33824 -11.21404 -10.86011 -10.83039 -10.66337 -10.47908 -10.31864 -10.27928 -10.09068 -10.00759 -9.82299 -9.61146 -8.96235 -8.60536 -8.52000 -8.38086 -6.75651 -5.66861 -2.98532 3.00934 3.39671 3.44241 3.48109 3.49702 3.55403 3.66443 3.94971 4.07922 4.28832 4.37771 4.54859 4.70076 4.85330 4.88888 4.93724 5.09205 5.19761 5.31171 5.36643 5.38150 5.43805 5.47208 5.47847 5.52992 5.55899 5.59627 5.64137 5.70391 5.73172 5.80297 5.84483 6.03679 6.12863 6.22840 6.27671 6.32932 6.45107 6.47523 6.61248 6.63430 6.79617 6.86687 6.99587 7.23793 7.58578 7.60807 7.83900 8.00251 8.30479 8.68623 9.27875 9.87995 10.54367 11.45083 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.003348 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.679659 B = 8362.393710 C = 8849.196949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 N -0.695 5.695 4 C 0.512 3.488 5 O -0.531 6.531 6 C 0.075 3.925 7 H 0.129 0.871 8 C 0.011 3.989 9 N -0.465 5.465 10 C 0.035 3.965 11 C -0.144 4.144 12 C -0.177 4.177 13 C 0.020 3.980 14 C -0.110 4.110 15 C 0.074 3.926 16 O -0.354 6.354 17 C -0.147 4.147 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.221 4.221 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.134 3.866 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.395 0.605 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.251 0.749 49 H 0.024 0.976 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 17.809 -3.854 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 N -0.346 5.346 4 C 0.298 3.702 5 O -0.409 6.409 6 C 0.013 3.987 7 H 0.147 0.853 8 C -0.118 4.118 9 N -0.189 5.189 10 C -0.093 4.093 11 C -0.163 4.163 12 C -0.215 4.215 13 C -0.071 4.071 14 C -0.148 4.148 15 C -0.002 4.002 16 O -0.271 6.271 17 C -0.186 4.186 18 C 0.053 3.947 19 N -0.330 5.330 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.574 5.574 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.007 3.993 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.042 0.958 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.139 16.906 -3.194 22.269 hybrid contribution 1.482 0.669 -0.036 1.627 sum -12.657 17.574 -3.231 21.897 Atomic orbital electron populations 1.21990 0.94219 1.01892 1.02599 1.21455 0.92689 0.80766 0.97707 1.45749 1.48436 1.11759 1.28633 1.20801 0.81188 0.86832 0.81425 1.90524 1.35639 1.77926 1.36776 1.22174 1.00767 0.89931 0.85875 0.85317 1.23096 0.89292 1.00711 0.98688 1.67231 1.08299 1.41420 1.01942 1.23828 0.99114 0.91639 0.94690 1.24882 0.98027 0.98926 0.94462 1.24560 0.98560 0.98402 0.99983 1.23390 0.98072 0.92231 0.93387 1.23286 0.94438 0.98899 0.98138 1.22134 0.81005 1.02798 0.94301 1.88153 1.22613 1.77008 1.39283 1.23216 1.00424 0.98915 0.96003 1.21139 0.90009 0.99813 0.83697 1.44445 1.07685 1.79031 1.01792 1.19028 0.89302 1.37657 0.88989 0.90677 1.24749 0.97693 1.02096 0.95990 1.69936 1.24081 1.54184 1.09153 0.86217 0.81898 0.78287 0.79501 1.21243 1.21676 1.21254 1.21910 0.87484 0.94792 0.95149 0.92382 0.90345 0.93262 0.77110 0.92113 0.88671 0.91114 0.89060 0.87546 0.88972 0.91211 0.90476 0.88198 0.88730 0.88149 0.91901 0.91033 0.93698 0.93984 0.93874 0.95834 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.59 37.16 0.32 -2.08 16 2 C 0.16 2.89 0.82 -129.55 -0.11 2.78 16 3 N -0.69 -11.40 5.14 -45.52 -0.23 -11.63 16 4 C 0.51 8.54 5.89 -10.98 -0.06 8.48 16 5 O -0.53 -10.29 10.66 -14.42 -0.15 -10.44 16 6 C 0.07 1.03 3.65 -27.73 -0.10 0.93 16 7 H 0.13 1.65 8.14 -51.93 -0.42 1.22 16 8 C 0.01 0.12 4.85 -3.74 -0.02 0.11 16 9 N -0.47 -5.26 5.57 -227.99 -1.27 -6.53 16 10 C 0.03 0.31 7.02 -0.23 0.00 0.31 16 11 C -0.14 -1.14 6.40 -98.03 -0.63 -1.77 16 12 C -0.18 -1.59 7.01 -30.17 -0.21 -1.80 16 13 C 0.02 0.21 1.59 -143.67 -0.23 -0.02 16 14 C -0.11 -0.96 7.81 -30.38 -0.24 -1.19 16 15 C 0.07 0.97 6.16 35.75 0.22 1.19 16 16 O -0.35 -5.30 10.49 -55.21 -0.58 -5.88 16 17 C -0.15 -2.65 5.96 -24.89 -0.15 -2.79 16 18 C 0.18 4.22 5.36 -3.06 -0.02 4.21 16 19 N -0.60 -15.60 3.39 -169.94 -0.58 -16.18 16 20 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.93 -27.05 10.31 55.49 0.57 -26.47 16 24 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.13 2.99 6.18 -2.41 -0.01 2.97 16 29 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.08 1.39 5.92 -51.93 -0.31 1.08 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.40 5.80 8.27 -40.82 -0.34 5.46 16 33 H 0.06 0.60 5.98 -51.93 -0.31 0.29 16 34 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 35 H 0.07 0.55 7.73 -51.93 -0.40 0.15 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.74 7.85 -51.93 -0.41 0.34 16 39 H 0.07 0.67 6.08 -51.93 -0.32 0.36 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.70 7.85 -51.93 -0.41 0.29 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 1.58 5.57 -51.93 -0.29 1.29 16 44 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 46 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 47 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.54 7.99 -51.93 -0.41 0.12 16 50 H 0.05 1.19 6.89 -51.93 -0.36 0.83 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -32.71 371.61 -11.22 -43.93 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.07 Total: 5.63 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.49 Total: 4.47 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.51 Total: -60.82 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.73 Total: -16.32 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.71 -11.22 -43.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046501072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.140 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds