Wall clock time and date at job start Tue Mar 31 2020 19:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 110.88449 * 2 1 4 4 C 1.34777 * 119.99803 * 56.12078 * 3 2 1 5 5 O 1.21276 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99866 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.20106 * 305.64662 * 6 4 3 8 8 C 1.53294 * 109.20630 * 65.00220 * 6 4 3 9 9 N 1.46784 * 108.49748 * 60.21426 * 8 6 4 10 10 C 1.49426 * 112.10767 * 166.25093 * 9 8 6 11 11 C 1.57023 * 99.32324 * 246.53719 * 10 9 8 12 12 C 1.55450 * 101.36726 * 44.29687 * 11 10 9 13 13 C 1.49506 * 107.61525 * 57.81442 * 9 8 6 14 14 C 1.52878 * 111.06837 * 159.53167 * 13 9 8 15 15 C 1.50164 * 114.92333 * 302.47191 * 13 9 8 16 16 O 1.42797 * 109.20816 * 186.33667 * 6 4 3 17 17 C 1.55160 * 111.00207 * 236.12160 * 2 1 3 18 18 C 1.54325 * 102.94141 * 206.41991 * 17 2 1 19 19 N 1.47022 * 107.26808 * 22.19396 * 18 17 2 20 20 C 1.36943 * 125.64725 * 181.02022 * 19 18 17 21 21 H 1.08002 * 119.99788 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99622 * 0.30349 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48496 * 109.47031 * 59.99836 * 24 22 20 26 26 H 1.48497 * 109.47267 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47169 * 300.00118 * 24 22 20 28 28 C 1.47427 * 108.70607 * 1.28411 * 19 18 17 29 29 H 1.09001 * 109.47066 * 183.87734 * 1 2 3 30 30 H 1.09001 * 109.47073 * 303.87739 * 1 2 3 31 31 H 1.08994 * 109.47204 * 63.88279 * 1 2 3 32 32 H 0.96995 * 120.00187 * 236.12199 * 3 2 1 33 33 H 1.08996 * 109.63584 * 179.97438 * 8 6 4 34 34 H 1.09006 * 109.62882 * 300.51575 * 8 6 4 35 35 H 1.09006 * 111.42562 * 4.06195 * 10 9 8 36 36 H 1.09001 * 111.43282 * 129.00619 * 10 9 8 37 37 H 1.09005 * 118.87555 * 179.55404 * 11 10 9 38 38 H 1.08998 * 114.72497 * 183.08971 * 12 11 10 39 39 H 1.09004 * 114.72213 * 48.77573 * 12 11 10 40 40 H 1.09006 * 114.69880 * 52.52098 * 14 13 9 41 41 H 1.09007 * 114.70205 * 186.75225 * 14 13 9 42 42 H 1.09002 * 109.70727 * 172.77062 * 15 13 9 43 43 H 1.09001 * 109.70348 * 293.33340 * 15 13 9 44 44 H 1.08996 * 110.71761 * 88.05952 * 17 2 1 45 45 H 1.08996 * 110.87457 * 324.85416 * 17 2 1 46 46 H 1.09000 * 109.87990 * 262.77884 * 18 17 2 47 47 H 1.08991 * 109.88062 * 141.60908 * 18 17 2 48 48 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.36238 * 94.47989 * 28 19 18 50 50 H 1.08998 * 110.36877 * 216.80572 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9690 5 8 0.9210 1.8726 1.8407 6 6 2.2223 3.6381 0.9694 7 1 3.3113 3.6059 0.9380 8 6 1.7036 4.3764 -0.2699 9 7 0.2369 4.4015 -0.2171 10 6 -0.3445 5.3708 -1.1945 11 6 -0.9584 6.4088 -0.1888 12 6 0.1964 6.5572 0.8412 13 6 -0.1585 5.0709 1.0599 14 6 -1.5935 5.5927 0.9855 15 6 0.3811 4.4277 2.3050 16 8 1.8070 4.2993 2.1650 17 6 2.0861 -0.8075 -1.2026 18 6 3.4675 -1.2738 -0.6966 19 7 3.4272 -1.2433 0.7727 20 6 4.4641 -1.5673 1.6065 21 1 4.3333 -1.5128 2.6772 22 6 5.6850 -1.9601 1.0753 23 7 5.8443 -2.0264 -0.2295 24 14 7.1018 -2.3945 2.2125 25 1 6.7071 -3.5308 3.0833 26 1 8.2858 -2.7797 1.4033 27 1 7.4386 -1.2190 3.0551 28 6 2.0836 -0.8123 1.2000 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5728 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 2.6626 1.6549 -0.6974 33 1 2.0881 5.3962 -0.2764 34 1 2.0287 3.8543 -1.1699 35 1 0.4295 5.8253 -1.8129 36 1 -1.1167 4.9045 -1.8064 37 1 -1.4729 7.2844 -0.5848 38 1 -0.0273 7.2084 1.6862 39 1 1.1789 6.7315 0.4026 40 1 -2.3321 4.8521 0.6785 41 1 -1.9051 6.1924 1.8408 42 1 0.1513 5.0504 3.1696 43 1 -0.0663 3.4420 2.4329 44 1 2.1921 -0.1691 -2.0797 45 1 1.4479 -1.6627 -1.4246 46 1 4.2426 -0.5992 -1.0603 47 1 3.6650 -2.2888 -1.0410 48 1 6.6973 -2.3012 -0.6005 49 1 1.4525 -1.6787 1.3980 50 1 2.1516 -0.1809 2.0859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046501072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:20 Heat of formation + Delta-G solvation = 14.570619 kcal Electronic energy + Delta-G solvation = -31618.825551 eV Core-core repulsion = 27648.836740 eV Total energy + Delta-G solvation = -3969.988810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.20051 -41.20126 -39.36606 -37.75805 -35.65817 -34.85611 -33.51455 -31.85350 -30.48907 -30.36829 -29.85757 -27.50236 -26.52082 -25.70317 -25.31849 -24.61538 -22.44377 -21.91612 -21.24177 -20.48867 -19.90903 -18.89572 -17.92956 -17.82175 -17.10258 -16.91660 -16.68861 -16.52439 -16.20211 -15.66919 -15.59562 -15.41932 -15.11700 -14.90828 -14.25888 -14.06892 -13.93099 -13.87223 -13.70435 -13.56613 -13.37358 -13.15732 -12.93861 -12.79635 -12.76542 -12.74034 -12.46326 -12.23882 -12.11151 -12.04722 -11.98346 -11.92797 -11.68705 -11.56728 -11.43710 -11.13968 -10.99515 -10.70747 -10.04293 -9.87580 -9.44576 -8.86300 -7.85642 -5.19477 1.43738 1.46274 1.52808 1.73754 2.21685 2.48399 2.64798 2.71847 3.29673 3.32161 3.38069 3.52572 3.57581 3.60429 3.68842 3.80907 3.94802 4.05723 4.07651 4.10243 4.22336 4.40125 4.41463 4.53994 4.60754 4.64658 4.71922 4.72982 4.75614 4.82876 4.85532 4.88306 4.91282 4.93601 4.95764 5.01523 5.03376 5.10291 5.13367 5.20316 5.40909 5.43230 5.55963 5.66166 5.73106 5.81570 5.85571 5.94881 6.19992 6.70239 7.11897 7.38818 7.77338 8.41933 9.23815 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.003348 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.679659 B = 8362.393710 C = 8849.196949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.173 3.827 3 N -0.693 5.693 4 C 0.508 3.492 5 O -0.562 6.562 6 C 0.074 3.926 7 H 0.135 0.865 8 C 0.020 3.980 9 N -0.487 5.487 10 C 0.033 3.967 11 C -0.128 4.128 12 C -0.170 4.170 13 C 0.004 3.996 14 C -0.107 4.107 15 C 0.073 3.927 16 O -0.373 6.373 17 C -0.128 4.128 18 C 0.187 3.813 19 N -0.620 5.620 20 C -0.245 4.245 21 H 0.067 0.933 22 C -0.057 4.057 23 N -0.944 5.944 24 Si 0.973 3.027 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.281 1.281 28 C 0.132 3.868 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.020 0.980 47 H 0.007 0.993 48 H 0.248 0.752 49 H 0.021 0.979 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 19.758 -5.160 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.085 3.915 3 N -0.345 5.345 4 C 0.295 3.705 5 O -0.441 6.441 6 C 0.013 3.987 7 H 0.152 0.848 8 C -0.109 4.109 9 N -0.211 5.211 10 C -0.094 4.094 11 C -0.146 4.146 12 C -0.208 4.208 13 C -0.086 4.086 14 C -0.145 4.145 15 C -0.003 4.003 16 O -0.291 6.291 17 C -0.166 4.166 18 C 0.062 3.938 19 N -0.347 5.347 20 C -0.374 4.374 21 H 0.085 0.915 22 C -0.250 4.250 23 N -0.593 5.593 24 Si 0.802 3.198 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.207 1.207 28 C 0.006 3.994 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.039 0.961 47 H 0.025 0.975 48 H 0.057 0.943 49 H 0.039 0.961 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -15.091 18.874 -4.512 24.583 hybrid contribution 1.763 0.013 0.463 1.823 sum -13.328 18.887 -4.049 23.468 Atomic orbital electron populations 1.21871 0.92197 1.02421 1.02947 1.21278 0.93904 0.81080 0.95205 1.45725 1.48609 1.11025 1.29099 1.21403 0.80544 0.87913 0.80678 1.90526 1.37010 1.78732 1.37839 1.22284 1.01031 0.88321 0.87113 0.84782 1.23040 0.89526 1.01021 0.97293 1.67211 1.08273 1.42873 1.02777 1.23922 0.99490 0.91452 0.94543 1.24851 0.97085 0.99064 0.93599 1.24529 0.98794 0.96756 1.00734 1.23449 0.99779 0.93200 0.92217 1.23378 0.92860 0.98912 0.99353 1.22133 0.80011 1.01640 0.96518 1.88109 1.23864 1.76911 1.40190 1.23083 0.96840 0.99951 0.96772 1.20934 0.92891 0.97388 0.82586 1.44682 1.08318 1.78981 1.02672 1.19283 0.90675 1.38192 0.89267 0.91540 1.25500 0.99830 1.02168 0.97509 1.70129 1.24268 1.54475 1.10400 0.85237 0.78775 0.78051 0.77760 1.20752 1.21374 1.20698 1.21993 0.86311 0.94863 0.96267 0.91475 0.92120 0.90986 0.75986 0.90794 0.87390 0.89830 0.88772 0.85217 0.87917 0.91748 0.91463 0.86483 0.87293 0.91408 0.88503 0.89392 0.96138 0.97482 0.94259 0.96125 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 8.59 71.98 0.62 -3.56 16 2 C 0.17 6.09 0.82 5.07 0.00 6.09 16 3 N -0.69 -22.31 5.14 -416.31 -2.14 -24.45 16 4 C 0.51 17.02 5.89 87.66 0.52 17.54 16 5 O -0.56 -22.44 10.66 16.09 0.17 -22.27 16 6 C 0.07 2.02 3.65 29.95 0.11 2.13 16 7 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 8 C 0.02 0.41 4.85 86.42 0.42 0.82 16 9 N -0.49 -10.15 5.57 -875.24 -4.87 -15.02 16 10 C 0.03 0.49 7.02 87.22 0.61 1.10 16 11 C -0.13 -1.60 6.40 -15.59 -0.10 -1.70 16 12 C -0.17 -2.61 7.01 28.37 0.20 -2.41 16 13 C 0.00 0.08 1.59 -5.74 -0.01 0.07 16 14 C -0.11 -1.64 7.81 28.23 0.22 -1.42 16 15 C 0.07 1.91 6.16 71.07 0.44 2.35 16 16 O -0.37 -11.24 10.49 -129.88 -1.36 -12.60 16 17 C -0.13 -4.40 5.96 31.78 0.19 -4.21 16 18 C 0.19 8.97 5.36 86.73 0.47 9.44 16 19 N -0.62 -32.94 3.39 -691.56 -2.35 -35.28 16 20 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 23 N -0.94 -56.23 10.31 21.65 0.22 -56.01 16 24 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 C 0.13 6.04 6.18 86.93 0.54 6.58 16 29 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.06 2.13 5.92 -2.39 -0.01 2.11 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.40 11.38 8.27 -92.71 -0.77 10.61 16 33 H 0.07 1.30 5.98 -2.39 -0.01 1.28 16 34 H 0.11 1.85 7.90 -2.38 -0.02 1.83 16 35 H 0.08 1.02 7.73 -2.38 -0.02 1.00 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 1.36 7.85 -2.39 -0.02 1.34 16 39 H 0.06 1.07 6.08 -2.38 -0.01 1.06 16 40 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.12 1.35 7.85 -2.38 -0.02 1.33 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.22 5.57 -2.39 -0.01 2.21 16 44 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 45 H 0.09 2.78 8.04 -2.39 -0.02 2.77 16 46 H 0.02 1.07 7.37 -2.39 -0.02 1.05 16 47 H 0.01 0.38 7.51 -2.39 -0.02 0.36 16 48 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 49 H 0.02 0.96 7.99 -2.39 -0.02 0.94 16 50 H 0.02 1.15 6.89 -2.39 -0.02 1.13 16 Total: -1.00 -73.41 371.61 -2.57 -75.98 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.18 Total: 24.23 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.55 Total: 16.47 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -9.14 Total: -130.76 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.19 Total: -34.87 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -73.41 -2.57 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046501072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.551 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds