Wall clock time and date at job start Tue Mar 31 2020 19:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34860 * 125.89202 * 2 1 4 4 C 1.40891 * 107.41650 * 180.29491 * 3 2 1 5 5 C 1.34849 * 107.42089 * 359.73970 * 4 3 2 6 6 C 1.50697 * 125.89421 * 180.02562 * 5 4 3 7 7 N 1.36348 * 125.89337 * 179.85046 * 2 1 3 8 8 C 1.46498 * 125.63443 * 359.95815 * 7 2 1 9 9 H 1.09004 * 109.47182 * 4.71473 * 8 7 2 10 10 C 1.52990 * 109.47082 * 244.71384 * 8 7 2 11 11 C 1.50702 * 109.46924 * 124.71069 * 8 7 2 12 12 O 1.21281 * 120.00058 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99916 * 179.97438 * 11 8 7 14 14 C 1.46500 * 119.99896 * 0.02562 * 13 11 8 15 15 C 1.46501 * 120.00242 * 180.02562 * 13 11 8 16 16 H 1.08999 * 110.64052 * 3.13798 * 15 13 11 17 17 C 1.54326 * 110.72023 * 126.47726 * 15 13 11 18 18 N 1.47022 * 107.26799 * 140.56036 * 17 15 13 19 19 C 1.36938 * 125.64688 * 181.09852 * 18 17 15 20 20 H 1.08000 * 120.00139 * 359.97039 * 19 18 17 21 21 C 1.38816 * 120.00137 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99825 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00150 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47180 * 89.99689 * 23 21 19 25 25 H 1.48500 * 109.47079 * 209.99686 * 23 21 19 26 26 H 1.48504 * 109.47054 * 329.99577 * 23 21 19 27 27 C 1.47422 * 108.70631 * 1.05588 * 18 17 15 28 28 C 1.54913 * 104.83336 * 335.87314 * 27 18 17 29 29 H 1.09004 * 111.00685 * 278.93674 * 28 27 18 30 30 O 1.42893 * 111.00625 * 155.08024 * 28 27 18 31 31 H 1.09000 * 109.46870 * 264.91561 * 1 2 3 32 32 H 1.08995 * 109.47444 * 24.91971 * 1 2 3 33 33 H 1.09001 * 109.47175 * 144.91903 * 1 2 3 34 34 H 1.07995 * 126.28920 * 0.03634 * 3 2 1 35 35 H 1.07999 * 126.29145 * 179.73264 * 4 3 2 36 36 H 1.09001 * 109.47021 * 275.73586 * 6 5 4 37 37 H 1.08997 * 109.47153 * 35.73580 * 6 5 4 38 38 H 1.08996 * 109.47725 * 155.74099 * 6 5 4 39 39 H 1.08999 * 109.47387 * 51.86556 * 10 8 7 40 40 H 1.09008 * 109.47194 * 171.86685 * 10 8 7 41 41 H 1.08996 * 109.47329 * 291.85953 * 10 8 7 42 42 H 1.09004 * 109.47415 * 269.99967 * 14 13 11 43 43 H 1.08998 * 109.47371 * 29.99870 * 14 13 11 44 44 H 1.09006 * 109.47363 * 150.00021 * 14 13 11 45 45 H 1.09004 * 109.87888 * 259.97118 * 17 15 13 46 46 H 1.08998 * 109.88388 * 21.13919 * 17 15 13 47 47 H 0.96998 * 120.00003 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.37055 * 217.03598 * 27 18 17 49 49 H 1.08998 * 110.37105 * 94.71252 * 27 18 17 50 50 H 0.96700 * 114.00116 * 67.80450 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6338 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8134 -1.6080 -0.0101 7 7 2.3063 -1.1046 0.0029 8 6 1.8421 -2.4941 0.0074 9 1 0.7555 -2.5144 -0.0764 10 6 2.2657 -3.1690 1.3134 11 6 2.4497 -3.2304 -1.1587 12 8 3.1972 -2.6516 -1.9184 13 7 2.1632 -4.5323 -1.3568 14 6 1.2607 -5.2316 -0.4388 15 6 2.7542 -5.2483 -2.4901 16 1 3.4400 -4.6018 -3.0375 17 6 3.4692 -6.5301 -2.0132 18 7 3.1923 -7.5791 -3.0054 19 6 3.6296 -8.8752 -2.9397 20 1 4.2332 -9.1998 -2.1050 21 6 3.2969 -9.7718 -3.9459 22 7 2.5608 -9.3763 -4.9628 23 14 3.8939 -11.5396 -3.8566 24 1 2.8933 -12.3640 -3.1325 25 1 4.0722 -12.0718 -5.2314 26 1 5.1909 -11.5882 -3.1349 27 6 2.3653 -7.0050 -4.0823 28 6 1.6482 -5.7966 -3.4301 29 1 0.7766 -6.1200 -2.8610 30 8 1.2839 -4.8256 -4.4132 31 1 -0.3633 -0.0911 1.0236 32 1 -0.3634 0.9319 -0.4330 33 1 -0.3633 -0.8410 -0.5906 34 1 1.9671 2.1207 0.0006 35 1 4.5160 1.2691 -0.0128 36 1 5.1602 -1.7457 -1.0342 37 1 5.6082 -1.1590 0.5854 38 1 4.5429 -2.5746 0.4148 39 1 1.9487 -2.5573 2.1580 40 1 1.8001 -4.1523 1.3819 41 1 3.3500 -3.2785 1.3308 42 1 1.8384 -5.6706 0.3747 43 1 0.5380 -4.5248 -0.0310 44 1 0.7341 -6.0198 -0.9769 45 1 4.5430 -6.3539 -1.9499 46 1 3.0825 -6.8298 -1.0391 47 1 2.3280 -10.0029 -5.6657 48 1 1.6358 -7.7359 -4.4311 49 1 2.9947 -6.6723 -4.9077 50 1 0.5957 -5.1231 -5.0238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047638709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:50 Heat of formation + Delta-G solvation = 13.580988 kcal Electronic energy + Delta-G solvation = -30847.105824 eV Core-core repulsion = 26877.074101 eV Total energy + Delta-G solvation = -3970.031724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.68560 -39.88826 -37.89942 -35.43147 -35.00331 -34.19661 -32.59581 -31.94012 -29.65506 -29.12362 -28.46069 -27.38064 -26.95802 -24.93701 -24.16130 -23.90220 -21.18325 -20.55227 -20.38589 -19.28749 -18.32264 -17.43592 -17.15307 -16.63564 -16.42433 -15.66336 -15.48668 -15.08480 -14.71680 -14.29114 -13.89814 -13.88262 -13.54387 -13.46030 -13.38972 -13.24324 -12.99947 -12.96923 -12.70217 -12.50705 -12.42272 -12.27222 -12.16437 -11.89394 -11.81108 -11.74829 -11.63925 -11.55477 -11.30987 -11.14025 -10.99506 -10.89122 -10.25458 -10.02779 -9.81255 -9.80549 -9.33986 -8.79816 -8.53370 -8.47604 -7.66477 -7.01444 -5.79470 -3.23347 2.19458 2.52841 2.68343 3.11998 3.13187 3.31678 3.37419 3.39441 4.17260 4.35711 4.46079 4.57211 4.60088 4.71855 4.97021 5.04768 5.12958 5.18434 5.20313 5.22748 5.32001 5.38403 5.38694 5.40868 5.48878 5.52450 5.60004 5.65186 5.72787 5.75050 5.80541 5.84846 5.87639 5.99392 6.06035 6.19021 6.37164 6.38159 6.47248 6.49134 6.76300 7.17941 7.26407 7.32832 7.35116 7.44371 7.48457 7.64630 8.08250 8.13685 8.20049 9.05247 9.65853 10.27703 11.24143 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002867 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.619839 B = 9764.162547 C =10041.953425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.212 4.212 5 C 0.054 3.946 6 C -0.084 4.084 7 N -0.425 5.425 8 C 0.115 3.885 9 H 0.118 0.882 10 C -0.174 4.174 11 C 0.504 3.496 12 O -0.512 6.512 13 N -0.596 5.596 14 C 0.068 3.932 15 C 0.138 3.862 16 H 0.112 0.888 17 C 0.132 3.868 18 N -0.598 5.598 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.918 3.082 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.129 3.871 28 C 0.064 3.936 29 H 0.059 0.941 30 O -0.563 6.563 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.254 0.746 48 H 0.112 0.888 49 H 0.025 0.975 50 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 14.174 12.823 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.216 4.216 4 C -0.236 4.236 5 C -0.057 4.057 6 C -0.141 4.141 7 N -0.103 5.103 8 C 0.009 3.991 9 H 0.136 0.864 10 C -0.231 4.231 11 C 0.289 3.711 12 O -0.386 6.386 13 N -0.329 5.329 14 C -0.074 4.074 15 C 0.034 3.966 16 H 0.130 0.870 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.354 4.354 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.206 1.206 27 C 0.003 3.997 28 C 0.003 3.997 29 H 0.077 0.923 30 O -0.367 6.367 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.130 0.870 49 H 0.043 0.957 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.239 14.302 12.604 19.770 hybrid contribution -0.201 -1.311 -0.356 1.373 sum -5.440 12.991 12.247 18.664 Atomic orbital electron populations 1.20265 0.88648 1.03080 1.01909 1.20210 0.93112 0.85697 1.11694 1.20554 0.92833 0.96982 1.11251 1.20543 0.97138 0.92821 1.13072 1.20193 0.84348 0.94310 1.06812 1.20469 0.93291 0.97041 1.03317 1.43562 1.05772 1.03645 1.57308 1.21179 1.00914 0.81277 0.95768 0.86419 1.22490 1.03928 1.01933 0.94797 1.20438 0.82320 0.82185 0.86168 1.90757 1.35653 1.66283 1.45938 1.47707 1.47036 1.09494 1.28622 1.22020 0.93375 0.98168 0.93881 1.22187 0.95274 0.93878 0.85234 0.87016 1.21511 0.97116 0.87131 0.93696 1.44268 1.60308 1.06167 1.21874 1.19076 1.26810 0.83679 1.05833 0.90176 1.24817 1.00314 0.98714 0.96591 1.69748 1.41664 1.33791 1.11809 0.86024 0.78286 0.83941 0.76942 1.21488 1.21539 1.20616 1.22565 0.95283 0.91873 0.89975 1.23748 0.96122 0.90124 0.89705 0.92278 1.86458 1.61353 1.42266 1.46659 0.91512 0.90256 0.92248 0.85083 0.85094 0.90007 0.91245 0.92407 0.90645 0.89134 0.90672 0.91684 0.91383 0.89979 0.95054 0.94932 0.93519 0.87029 0.95686 0.77874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.86 36.00 0.35 -0.38 16 2 C 0.00 0.03 6.89 -81.79 -0.56 -0.53 16 3 C -0.19 -2.50 10.77 -39.78 -0.43 -2.93 16 4 C -0.21 -2.94 10.76 -39.78 -0.43 -3.37 16 5 C 0.05 0.78 5.77 -81.79 -0.47 0.31 16 6 C -0.08 -1.10 8.63 36.00 0.31 -0.79 16 7 N -0.42 -5.72 2.45 -102.19 -0.25 -5.97 16 8 C 0.12 1.34 2.36 -69.09 -0.16 1.18 16 9 H 0.12 1.14 5.99 -51.93 -0.31 0.83 16 10 C -0.17 -1.56 8.72 37.15 0.32 -1.24 16 11 C 0.50 7.68 6.25 -10.98 -0.07 7.61 16 12 O -0.51 -9.83 12.81 5.56 0.07 -9.76 16 13 N -0.60 -8.76 2.89 -171.83 -0.50 -9.25 16 14 C 0.07 0.74 7.46 59.85 0.45 1.18 16 15 C 0.14 2.54 3.09 -66.09 -0.20 2.34 16 16 H 0.11 2.38 7.00 -51.93 -0.36 2.01 16 17 C 0.13 2.66 6.87 -3.06 -0.02 2.64 16 18 N -0.60 -14.62 3.39 -170.07 -0.58 -15.20 16 19 C -0.23 -6.01 10.27 -15.06 -0.15 -6.16 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -25.74 10.09 55.49 0.56 -25.18 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 28 C 0.06 1.20 3.97 -24.58 -0.10 1.11 16 29 H 0.06 1.04 6.39 -51.93 -0.33 0.71 16 30 O -0.56 -10.30 13.47 -35.23 -0.47 -10.78 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 7.24 -51.93 -0.38 0.15 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.08 1.24 7.27 -51.93 -0.38 0.86 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.73 4.75 -51.93 -0.25 0.48 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.64 4.80 -51.92 -0.25 0.39 16 41 H 0.07 0.75 5.54 -51.93 -0.29 0.46 16 42 H 0.06 0.61 6.86 -51.93 -0.36 0.26 16 43 H 0.07 0.53 5.92 -51.93 -0.31 0.22 16 44 H 0.08 0.96 6.40 -51.93 -0.33 0.63 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.61 6.71 -51.93 -0.35 0.26 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.37 5.28 9.12 45.56 0.42 5.69 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -33.55 379.71 -8.45 -41.99 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.70 Total: 8.59 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.28 Total: 3.63 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.76 Total: -55.60 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.40 Total: -20.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.55 -8.45 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.575 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds