Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34860 * 125.89202 * 2 1 4 4 C 1.40891 * 107.41650 * 180.29491 * 3 2 1 5 5 C 1.34849 * 107.42089 * 359.73970 * 4 3 2 6 6 C 1.50697 * 125.89421 * 180.02562 * 5 4 3 7 7 N 1.36348 * 125.89337 * 179.85046 * 2 1 3 8 8 C 1.46498 * 125.63443 * 359.95815 * 7 2 1 9 9 H 1.09004 * 109.47182 * 4.71473 * 8 7 2 10 10 C 1.52990 * 109.47082 * 244.71384 * 8 7 2 11 11 C 1.50702 * 109.46924 * 124.71069 * 8 7 2 12 12 O 1.21281 * 120.00058 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99916 * 179.97438 * 11 8 7 14 14 C 1.46500 * 119.99896 * 0.02562 * 13 11 8 15 15 C 1.46501 * 120.00242 * 180.02562 * 13 11 8 16 16 H 1.08999 * 110.64052 * 3.13798 * 15 13 11 17 17 C 1.54326 * 110.72023 * 126.47726 * 15 13 11 18 18 N 1.47022 * 107.26799 * 140.56036 * 17 15 13 19 19 C 1.36938 * 125.64688 * 181.09852 * 18 17 15 20 20 H 1.08000 * 120.00139 * 359.97039 * 19 18 17 21 21 C 1.38816 * 120.00137 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99825 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00150 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47180 * 89.99689 * 23 21 19 25 25 H 1.48500 * 109.47079 * 209.99686 * 23 21 19 26 26 H 1.48504 * 109.47054 * 329.99577 * 23 21 19 27 27 C 1.47422 * 108.70631 * 1.05588 * 18 17 15 28 28 C 1.54913 * 104.83336 * 335.87314 * 27 18 17 29 29 H 1.09004 * 111.00685 * 278.93674 * 28 27 18 30 30 O 1.42893 * 111.00625 * 155.08024 * 28 27 18 31 31 H 1.09000 * 109.46870 * 264.91561 * 1 2 3 32 32 H 1.08995 * 109.47444 * 24.91971 * 1 2 3 33 33 H 1.09001 * 109.47175 * 144.91903 * 1 2 3 34 34 H 1.07995 * 126.28920 * 0.03634 * 3 2 1 35 35 H 1.07999 * 126.29145 * 179.73264 * 4 3 2 36 36 H 1.09001 * 109.47021 * 275.73586 * 6 5 4 37 37 H 1.08997 * 109.47153 * 35.73580 * 6 5 4 38 38 H 1.08996 * 109.47725 * 155.74099 * 6 5 4 39 39 H 1.08999 * 109.47387 * 51.86556 * 10 8 7 40 40 H 1.09008 * 109.47194 * 171.86685 * 10 8 7 41 41 H 1.08996 * 109.47329 * 291.85953 * 10 8 7 42 42 H 1.09004 * 109.47415 * 269.99967 * 14 13 11 43 43 H 1.08998 * 109.47371 * 29.99870 * 14 13 11 44 44 H 1.09006 * 109.47363 * 150.00021 * 14 13 11 45 45 H 1.09004 * 109.87888 * 259.97118 * 17 15 13 46 46 H 1.08998 * 109.88388 * 21.13919 * 17 15 13 47 47 H 0.96998 * 120.00003 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.37055 * 217.03598 * 27 18 17 49 49 H 1.08998 * 110.37105 * 94.71252 * 27 18 17 50 50 H 0.96700 * 114.00116 * 67.80450 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6338 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8134 -1.6080 -0.0101 7 7 2.3063 -1.1046 0.0029 8 6 1.8421 -2.4941 0.0074 9 1 0.7555 -2.5144 -0.0764 10 6 2.2657 -3.1690 1.3134 11 6 2.4497 -3.2304 -1.1587 12 8 3.1972 -2.6516 -1.9184 13 7 2.1632 -4.5323 -1.3568 14 6 1.2607 -5.2316 -0.4388 15 6 2.7542 -5.2483 -2.4901 16 1 3.4400 -4.6018 -3.0375 17 6 3.4692 -6.5301 -2.0132 18 7 3.1923 -7.5791 -3.0054 19 6 3.6296 -8.8752 -2.9397 20 1 4.2332 -9.1998 -2.1050 21 6 3.2969 -9.7718 -3.9459 22 7 2.5608 -9.3763 -4.9628 23 14 3.8939 -11.5396 -3.8566 24 1 2.8933 -12.3640 -3.1325 25 1 4.0722 -12.0718 -5.2314 26 1 5.1909 -11.5882 -3.1349 27 6 2.3653 -7.0050 -4.0823 28 6 1.6482 -5.7966 -3.4301 29 1 0.7766 -6.1200 -2.8610 30 8 1.2839 -4.8256 -4.4132 31 1 -0.3633 -0.0911 1.0236 32 1 -0.3634 0.9319 -0.4330 33 1 -0.3633 -0.8410 -0.5906 34 1 1.9671 2.1207 0.0006 35 1 4.5160 1.2691 -0.0128 36 1 5.1602 -1.7457 -1.0342 37 1 5.6082 -1.1590 0.5854 38 1 4.5429 -2.5746 0.4148 39 1 1.9487 -2.5573 2.1580 40 1 1.8001 -4.1523 1.3819 41 1 3.3500 -3.2785 1.3308 42 1 1.8384 -5.6706 0.3747 43 1 0.5380 -4.5248 -0.0310 44 1 0.7341 -6.0198 -0.9769 45 1 4.5430 -6.3539 -1.9499 46 1 3.0825 -6.8298 -1.0391 47 1 2.3280 -10.0029 -5.6657 48 1 1.6358 -7.7359 -4.4311 49 1 2.9947 -6.6723 -4.9077 50 1 0.5957 -5.1231 -5.0238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047638709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = -9.444959 kcal Electronic energy + Delta-G solvation = -30848.104304 eV Core-core repulsion = 26877.074101 eV Total energy + Delta-G solvation = -3971.030204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.67457 -41.12913 -39.41070 -36.80518 -36.53112 -35.29557 -33.75290 -33.48937 -30.86155 -30.11602 -29.82239 -28.90979 -28.05803 -26.53726 -25.26263 -24.92904 -22.50044 -22.32000 -21.36911 -20.61732 -19.38043 -19.03563 -18.73955 -17.85275 -17.56485 -17.09465 -16.71509 -16.35514 -16.03329 -15.64781 -15.34839 -15.08049 -14.88224 -14.59997 -14.49364 -14.31425 -14.13429 -14.03738 -13.80048 -13.68219 -13.43686 -13.33126 -13.28040 -13.22976 -13.12055 -13.05856 -12.79444 -12.77434 -12.67972 -12.54096 -12.48426 -12.07956 -11.97966 -11.93546 -11.52012 -11.11876 -10.84741 -10.78047 -9.74287 -9.52163 -8.99095 -8.63922 -7.82281 -5.29422 1.17547 1.39099 1.47949 1.49648 1.58056 1.68591 2.07286 2.13004 2.46497 3.03633 3.22801 3.30058 3.63316 3.64742 3.74034 3.80628 3.86688 3.99629 4.09384 4.17535 4.22136 4.26507 4.38039 4.43329 4.47397 4.54562 4.59113 4.61894 4.69029 4.76049 4.79455 4.81799 4.85497 4.91786 4.94070 5.02403 5.11013 5.22427 5.33667 5.38991 5.41319 5.44499 5.51865 5.65454 6.18370 6.21147 6.21383 6.36422 6.52469 6.80239 6.98730 7.02660 7.67714 8.29861 9.19295 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002867 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.619839 B = 9764.162547 C =10041.953425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.001 4.001 3 C -0.213 4.213 4 C -0.228 4.228 5 C 0.028 3.972 6 C -0.077 4.077 7 N -0.432 5.432 8 C 0.120 3.880 9 H 0.146 0.854 10 C -0.168 4.168 11 C 0.499 3.501 12 O -0.560 6.560 13 N -0.592 5.592 14 C 0.057 3.943 15 C 0.151 3.849 16 H 0.077 0.923 17 C 0.135 3.865 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.087 0.913 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.136 3.864 28 C 0.084 3.916 29 H 0.084 0.916 30 O -0.573 6.573 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.020 0.980 46 H 0.059 0.941 47 H 0.249 0.751 48 H 0.089 0.911 49 H -0.016 1.016 50 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 14.207 15.541 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.237 4.237 4 C -0.252 4.252 5 C -0.083 4.083 6 C -0.134 4.134 7 N -0.110 5.110 8 C 0.014 3.986 9 H 0.164 0.836 10 C -0.225 4.225 11 C 0.286 3.714 12 O -0.438 6.438 13 N -0.324 5.324 14 C -0.084 4.084 15 C 0.046 3.954 16 H 0.095 0.905 17 C 0.009 3.991 18 N -0.344 5.344 19 C -0.368 4.368 20 H 0.105 0.895 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.811 3.189 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.197 1.197 27 C 0.009 3.991 28 C 0.023 3.977 29 H 0.102 0.898 30 O -0.380 6.380 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.107 0.893 49 H 0.002 0.998 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.244 14.339 15.365 22.230 hybrid contribution 0.437 -1.255 -1.234 1.813 sum -6.807 13.084 14.132 20.427 Atomic orbital electron populations 1.20391 0.85908 1.03900 1.03545 1.20870 0.94879 0.85287 1.10023 1.20874 0.92620 0.98206 1.12007 1.20847 0.98134 0.93139 1.13096 1.20394 0.85195 0.94709 1.08014 1.20383 0.93788 0.97419 1.01797 1.43766 1.05551 1.04526 1.57116 1.21369 1.01969 0.80197 0.95058 0.83621 1.22511 1.03313 1.03183 0.93519 1.21175 0.81565 0.82042 0.86577 1.90751 1.37798 1.67330 1.47877 1.47688 1.47207 1.09498 1.27974 1.22407 0.93661 0.98916 0.93454 1.21663 0.94567 0.92710 0.86506 0.90495 1.21582 0.96806 0.86858 0.93832 1.44504 1.60551 1.06531 1.22845 1.19457 1.26633 0.84753 1.06000 0.89515 1.25644 1.00873 1.02533 0.96477 1.69980 1.42775 1.34680 1.12323 0.85014 0.78177 0.79324 0.76394 1.20608 1.22385 1.19679 1.22322 0.94249 0.93122 0.89358 1.23462 0.96482 0.88240 0.89485 0.89832 1.86434 1.62310 1.42107 1.47170 0.89240 0.89206 0.91781 0.83494 0.84487 0.92898 0.89469 0.92113 0.89125 0.86659 0.92010 0.89713 0.87443 0.90603 0.96191 0.92304 0.94121 0.89292 0.99807 0.75758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.86 71.23 0.70 -0.46 16 2 C 0.00 -0.02 6.89 41.08 0.28 0.27 16 3 C -0.21 -5.31 10.77 22.14 0.24 -5.08 16 4 C -0.23 -6.30 10.76 22.14 0.24 -6.06 16 5 C 0.03 0.79 5.77 41.08 0.24 1.03 16 6 C -0.08 -2.06 8.63 71.23 0.61 -1.44 16 7 N -0.43 -10.88 2.45 -477.21 -1.17 -12.05 16 8 C 0.12 2.45 2.36 44.24 0.10 2.55 16 9 H 0.15 2.14 5.99 -2.38 -0.01 2.13 16 10 C -0.17 -2.39 8.72 71.98 0.63 -1.77 16 11 C 0.50 14.56 6.25 87.66 0.55 15.11 16 12 O -0.56 -21.91 12.81 -3.03 -0.04 -21.95 16 13 N -0.59 -16.27 2.89 -815.93 -2.35 -18.62 16 14 C 0.06 0.99 7.46 127.77 0.95 1.94 16 15 C 0.15 5.56 3.09 46.18 0.14 5.70 16 16 H 0.08 3.41 7.00 -2.39 -0.02 3.40 16 17 C 0.14 5.41 6.87 86.73 0.60 6.01 16 18 N -0.62 -30.53 3.39 -691.98 -2.35 -32.88 16 19 C -0.24 -12.82 10.27 84.03 0.86 -11.96 16 20 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 21 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 22 N -0.95 -54.25 10.09 21.65 0.22 -54.03 16 23 Si 0.98 43.76 29.55 68.60 2.03 45.79 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.14 6.55 5.62 86.86 0.49 7.04 16 28 C 0.08 3.15 3.97 31.99 0.13 3.28 16 29 H 0.08 2.77 6.39 -2.39 -0.02 2.75 16 30 O -0.57 -20.86 13.47 -148.98 -2.01 -22.86 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.88 7.24 -2.39 -0.02 0.87 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.05 1.70 7.27 -2.39 -0.02 1.69 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.54 4.75 -2.39 -0.01 1.53 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 1.05 4.80 -2.38 -0.01 1.03 16 41 H 0.06 1.08 5.54 -2.39 -0.01 1.07 16 42 H 0.08 1.19 6.86 -2.38 -0.02 1.18 16 43 H 0.11 1.06 5.92 -2.39 -0.01 1.04 16 44 H 0.08 1.49 6.40 -2.38 -0.02 1.47 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 2.06 6.71 -2.39 -0.02 2.05 16 47 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.09 4.72 5.87 -2.39 -0.01 4.70 16 49 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.39 10.84 9.12 -74.06 -0.68 10.16 16 Total: -1.00 -76.47 379.71 1.86 -74.62 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.30 Total: 28.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 7.23 Total: 13.23 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -5.65 Total: -117.59 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -2.05 Total: -44.82 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -76.47 1.86 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.171 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds