Wall clock time and date at job start Tue Mar 31 2020 19:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53046 * 109.44819 * 2 1 4 4 C 1.53188 * 109.31481 * 181.37311 * 3 2 1 5 5 N 1.46931 * 108.77703 * 305.36763 * 4 3 2 6 6 C 1.34776 * 120.62840 * 233.58333 * 5 4 3 7 7 O 1.21349 * 119.99515 * 171.41580 * 6 5 4 8 8 C 1.49440 * 120.00241 * 351.42009 * 6 5 4 9 9 O 1.21351 * 120.00034 * 353.27990 * 8 6 5 10 10 N 1.34779 * 120.00186 * 173.28344 * 8 6 5 11 11 C 1.46673 * 125.34058 * 180.02562 * 10 8 6 12 12 C 1.53721 * 107.94247 * 180.54023 * 11 10 8 13 13 H 1.09003 * 112.56145 * 139.71630 * 12 11 10 14 14 C 1.53687 * 109.34101 * 266.24951 * 12 11 10 15 15 N 1.46640 * 108.00684 * 127.56021 * 14 12 11 16 16 C 1.36942 * 125.32751 * 180.81652 * 15 14 12 17 17 H 1.07996 * 120.00073 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99826 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99703 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00182 * 20 18 16 22 22 H 1.48503 * 109.47215 * 209.99922 * 20 18 16 23 23 H 1.48490 * 109.47412 * 330.00168 * 20 18 16 24 24 C 1.46739 * 109.34301 * 0.83254 * 15 14 12 25 25 C 1.53926 * 106.72033 * 341.66399 * 24 15 14 26 26 H 1.09004 * 113.01107 * 150.83218 * 25 24 15 27 27 C 1.46773 * 125.33586 * 359.68983 * 10 8 6 28 28 C 1.46922 * 118.73978 * 53.60411 * 5 4 3 29 29 C 1.53041 * 109.45786 * 120.05457 * 2 1 3 30 30 H 1.09000 * 109.47808 * 299.97071 * 1 2 3 31 31 H 1.09007 * 109.46899 * 59.96749 * 1 2 3 32 32 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46344 * 240.03505 * 2 1 3 34 34 H 1.08993 * 109.49748 * 301.32624 * 3 2 1 35 35 H 1.09000 * 109.49726 * 61.42466 * 3 2 1 36 36 H 1.08996 * 109.58771 * 185.57853 * 4 3 2 37 37 H 1.09003 * 109.58449 * 65.15277 * 4 3 2 38 38 H 1.08998 * 109.76636 * 300.16167 * 11 10 8 39 39 H 1.08997 * 109.77272 * 60.91640 * 11 10 8 40 40 H 1.08999 * 109.76220 * 247.19645 * 14 12 11 41 41 H 1.08996 * 109.76388 * 7.91541 * 14 12 11 42 42 H 0.97001 * 119.99792 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.01209 * 222.34213 * 24 15 14 44 44 H 1.09003 * 110.00655 * 100.97939 * 24 15 14 45 45 H 1.08997 * 110.02935 * 280.77500 * 27 10 8 46 46 H 1.08994 * 110.03207 * 42.19532 * 27 10 8 47 47 H 1.08995 * 109.58770 * 186.60582 * 28 5 4 48 48 H 1.09010 * 109.70511 * 66.24916 * 28 5 4 49 49 H 1.09000 * 109.50357 * 298.58506 * 29 2 1 50 50 H 1.09008 * 109.49279 * 58.65309 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4431 0.0000 4 6 3.5710 1.4397 -0.0346 5 7 4.0675 0.6244 1.0823 6 6 4.9615 1.1284 1.9560 7 8 5.2465 0.5070 2.9586 8 6 5.6017 2.4523 1.6901 9 8 5.4113 3.0169 0.6329 10 7 6.3905 3.0192 2.6243 11 6 7.0741 4.3097 2.4879 12 6 7.8717 4.5618 3.7776 13 1 8.8513 4.9992 3.5848 14 6 7.0204 5.3961 4.7477 15 7 6.9897 4.6997 6.0379 16 6 6.3170 5.1258 7.1520 17 1 6.3537 4.5434 8.0606 18 6 5.5880 6.3064 7.1132 19 7 5.5428 7.0160 6.0057 20 14 4.6698 6.8873 8.6328 21 1 5.5590 7.7541 9.4472 22 1 3.4690 7.6580 8.2211 23 1 4.2515 5.7119 9.4380 24 6 7.7929 3.4749 5.9483 25 6 7.9601 3.1635 4.4501 26 1 8.8869 2.6357 4.2255 27 6 6.6945 2.4453 3.9406 28 6 3.5713 -0.7507 1.2285 29 6 2.0398 -0.7227 1.2490 30 1 -0.3635 0.5134 0.8902 31 1 -0.3633 0.5144 -0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8931 -0.5133 -0.8903 34 1 1.6570 1.9640 -0.8777 35 1 1.6972 1.9498 0.9023 36 1 3.9411 2.4601 0.0650 37 1 3.9142 1.0148 -0.9780 38 1 7.7521 4.2794 1.6350 39 1 6.3399 5.1029 2.3475 40 1 7.4649 6.3835 4.8725 41 1 6.0073 5.4946 4.3579 42 1 5.0337 7.8412 5.9788 43 1 7.2768 2.6532 6.4447 44 1 8.7686 3.6344 6.4072 45 1 5.8632 2.6177 4.6240 46 1 6.8856 1.3764 3.8467 47 1 3.9415 -1.1756 2.1614 48 1 3.9145 -1.3564 0.3896 49 1 1.6975 -0.1956 2.1396 50 1 1.6569 -1.7433 1.2605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049099099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:21 Heat of formation + Delta-G solvation = -24.529266 kcal Electronic energy + Delta-G solvation = -30525.243567 eV Core-core repulsion = 26553.559259 eV Total energy + Delta-G solvation = -3971.684308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.02154 -39.60457 -38.14868 -37.76353 -35.14768 -33.96210 -32.26947 -31.33851 -30.40566 -29.44745 -28.69030 -26.24039 -25.48784 -24.71043 -23.53139 -23.13570 -21.74462 -20.39878 -20.07997 -19.34853 -19.11225 -17.17949 -17.01159 -16.67337 -16.29250 -15.96854 -15.16692 -14.97729 -14.61774 -14.57337 -14.38496 -14.16314 -13.76153 -13.67859 -13.35536 -13.29572 -13.00583 -12.89607 -12.64024 -12.20039 -12.12176 -12.04035 -11.98941 -11.49584 -11.47134 -11.41013 -11.36924 -11.03385 -10.89656 -10.81455 -10.64807 -10.46991 -10.40234 -10.09148 -10.06895 -9.80214 -9.63397 -9.07516 -8.85326 -8.61061 -8.40530 -6.83660 -5.72848 -3.06171 1.51976 2.32858 3.28611 3.40002 3.45204 3.46721 3.47081 4.23582 4.49497 4.50676 4.53706 4.58977 4.85161 4.89675 4.99648 5.07537 5.18709 5.28852 5.31389 5.39131 5.40794 5.50550 5.55624 5.56828 5.60515 5.66556 5.71206 5.76299 5.78089 5.85656 5.89025 5.93196 5.95608 6.07578 6.18027 6.22335 6.26706 6.28262 6.40445 6.50096 6.59372 6.65960 6.83629 7.05661 7.45471 7.55540 7.57981 7.75240 7.80212 8.09625 8.25898 9.21688 9.82193 10.45697 11.38800 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.003186 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.787919 B = 8784.977864 C = 9671.941448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.131 4.131 4 C 0.070 3.930 5 N -0.585 5.585 6 C 0.513 3.487 7 O -0.514 6.514 8 C 0.516 3.484 9 O -0.526 6.526 10 N -0.570 5.570 11 C 0.117 3.883 12 C -0.124 4.124 13 H 0.093 0.907 14 C 0.185 3.815 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.145 3.855 25 C -0.114 4.114 26 H 0.091 0.909 27 C 0.109 3.891 28 C 0.109 3.891 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.040 0.960 44 H 0.021 0.979 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -14.245 -13.941 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.169 4.169 4 C -0.052 4.052 5 N -0.319 5.319 6 C 0.296 3.704 7 O -0.390 6.390 8 C 0.300 3.700 9 O -0.406 6.406 10 N -0.301 5.301 11 C -0.005 4.005 12 C -0.144 4.144 13 H 0.112 0.888 14 C 0.060 3.940 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.019 3.981 25 C -0.134 4.134 26 H 0.109 0.891 27 C -0.013 4.013 28 C -0.014 4.014 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.489 -14.135 -13.922 20.144 hybrid contribution -0.627 0.335 0.722 1.013 sum -4.116 -13.800 -13.201 19.535 Atomic orbital electron populations 1.21826 0.95014 1.01615 1.01955 1.21164 0.95760 0.96286 0.98114 1.22032 0.95535 0.96470 1.02910 1.22865 0.93733 1.00428 0.88142 1.47901 1.41410 1.14285 1.28349 1.20071 0.80476 0.86728 0.83149 1.90722 1.61563 1.61176 1.25522 1.19658 0.80490 0.86041 0.83800 1.90454 1.60788 1.64561 1.24844 1.48155 1.44720 1.20999 1.16245 1.22013 0.95887 0.84302 0.98248 1.23183 0.99631 0.96902 0.94664 0.88830 1.21116 0.96732 0.92960 0.83216 1.44209 1.57146 1.21729 1.09811 1.19044 1.22789 1.04371 0.89447 0.90350 1.24793 1.00536 0.97569 0.97461 1.69949 1.45435 1.16269 1.25286 0.86116 0.79177 0.78473 0.81985 1.21599 1.21718 1.20689 1.21164 0.94899 0.90432 0.91636 1.23025 0.96869 0.95636 0.97822 0.89119 1.22465 0.98003 0.98402 0.82413 1.21696 0.94188 0.82124 1.03349 1.21982 0.94773 1.01183 0.98784 0.92597 0.92609 0.92747 0.91089 0.90551 0.91463 0.84071 0.91593 0.91631 0.90226 0.93627 0.93135 0.93747 0.94237 0.96144 0.89928 0.89208 0.88755 0.91215 0.91231 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.77 2.68 -90.58 -0.24 -1.01 16 3 C -0.13 -1.26 5.36 -26.61 -0.14 -1.40 16 4 C 0.07 0.79 5.98 -3.71 -0.02 0.77 16 5 N -0.59 -7.48 2.97 -173.28 -0.52 -7.99 16 6 C 0.51 8.06 7.68 -11.59 -0.09 7.97 16 7 O -0.51 -8.88 13.26 5.50 0.07 -8.81 16 8 C 0.52 8.71 7.76 -11.59 -0.09 8.62 16 9 O -0.53 -9.08 13.49 5.50 0.07 -9.01 16 10 N -0.57 -9.86 3.31 -172.67 -0.57 -10.43 16 11 C 0.12 1.97 6.23 -3.57 -0.02 1.95 16 12 C -0.12 -2.20 4.02 -88.61 -0.36 -2.55 16 13 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 14 C 0.18 4.31 4.75 -3.61 -0.02 4.29 16 15 N -0.60 -14.96 3.37 -171.95 -0.58 -15.54 16 16 C -0.23 -6.27 10.25 -15.06 -0.15 -6.43 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.73 10.25 55.49 0.57 -26.16 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.15 2.90 6.37 -3.43 -0.02 2.88 16 25 C -0.11 -1.91 4.19 -88.24 -0.37 -2.28 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 C 0.11 1.90 5.22 -3.28 -0.02 1.88 16 28 C 0.11 1.11 6.44 -3.71 -0.02 1.08 16 29 C -0.13 -1.13 5.36 -26.61 -0.14 -1.27 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.14 1.94 4.31 -54.80 -0.24 1.71 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.45 7.44 -51.93 -0.39 1.06 16 40 H 0.05 1.19 7.46 -51.93 -0.39 0.80 16 41 H 0.05 1.33 6.50 -51.93 -0.34 0.99 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 1.69 7.72 -51.93 -0.40 1.29 16 46 H 0.09 1.49 6.27 -51.93 -0.33 1.17 16 47 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 48 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -30.85 379.27 -10.04 -40.89 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.31 Total: 0.81 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -1.47 Total: 13.49 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -1.10 Total: -60.12 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.15 Total: -17.82 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.85 -10.04 -40.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.356 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds