Wall clock time and date at job start Tue Mar 31 2020 19:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53046 * 109.44819 * 2 1 4 4 C 1.53188 * 109.31481 * 181.37311 * 3 2 1 5 5 N 1.46931 * 108.77703 * 305.36763 * 4 3 2 6 6 C 1.34776 * 120.62840 * 233.58333 * 5 4 3 7 7 O 1.21349 * 119.99515 * 171.41580 * 6 5 4 8 8 C 1.49440 * 120.00241 * 351.42009 * 6 5 4 9 9 O 1.21351 * 120.00034 * 353.27990 * 8 6 5 10 10 N 1.34779 * 120.00186 * 173.28344 * 8 6 5 11 11 C 1.46673 * 125.34058 * 180.02562 * 10 8 6 12 12 C 1.53721 * 107.94247 * 180.54023 * 11 10 8 13 13 H 1.09003 * 112.56145 * 139.71630 * 12 11 10 14 14 C 1.53687 * 109.34101 * 266.24951 * 12 11 10 15 15 N 1.46640 * 108.00684 * 127.56021 * 14 12 11 16 16 C 1.36942 * 125.32751 * 180.81652 * 15 14 12 17 17 H 1.07996 * 120.00073 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99826 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99703 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00182 * 20 18 16 22 22 H 1.48503 * 109.47215 * 209.99922 * 20 18 16 23 23 H 1.48490 * 109.47412 * 330.00168 * 20 18 16 24 24 C 1.46739 * 109.34301 * 0.83254 * 15 14 12 25 25 C 1.53926 * 106.72033 * 341.66399 * 24 15 14 26 26 H 1.09004 * 113.01107 * 150.83218 * 25 24 15 27 27 C 1.46773 * 125.33586 * 359.68983 * 10 8 6 28 28 C 1.46922 * 118.73978 * 53.60411 * 5 4 3 29 29 C 1.53041 * 109.45786 * 120.05457 * 2 1 3 30 30 H 1.09000 * 109.47808 * 299.97071 * 1 2 3 31 31 H 1.09007 * 109.46899 * 59.96749 * 1 2 3 32 32 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46344 * 240.03505 * 2 1 3 34 34 H 1.08993 * 109.49748 * 301.32624 * 3 2 1 35 35 H 1.09000 * 109.49726 * 61.42466 * 3 2 1 36 36 H 1.08996 * 109.58771 * 185.57853 * 4 3 2 37 37 H 1.09003 * 109.58449 * 65.15277 * 4 3 2 38 38 H 1.08998 * 109.76636 * 300.16167 * 11 10 8 39 39 H 1.08997 * 109.77272 * 60.91640 * 11 10 8 40 40 H 1.08999 * 109.76220 * 247.19645 * 14 12 11 41 41 H 1.08996 * 109.76388 * 7.91541 * 14 12 11 42 42 H 0.97001 * 119.99792 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.01209 * 222.34213 * 24 15 14 44 44 H 1.09003 * 110.00655 * 100.97939 * 24 15 14 45 45 H 1.08997 * 110.02935 * 280.77500 * 27 10 8 46 46 H 1.08994 * 110.03207 * 42.19532 * 27 10 8 47 47 H 1.08995 * 109.58770 * 186.60582 * 28 5 4 48 48 H 1.09010 * 109.70511 * 66.24916 * 28 5 4 49 49 H 1.09000 * 109.50357 * 298.58506 * 29 2 1 50 50 H 1.09008 * 109.49279 * 58.65309 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0395 1.4431 0.0000 4 6 3.5710 1.4397 -0.0346 5 7 4.0675 0.6244 1.0823 6 6 4.9615 1.1284 1.9560 7 8 5.2465 0.5070 2.9586 8 6 5.6017 2.4523 1.6901 9 8 5.4113 3.0169 0.6329 10 7 6.3905 3.0192 2.6243 11 6 7.0741 4.3097 2.4879 12 6 7.8717 4.5618 3.7776 13 1 8.8513 4.9992 3.5848 14 6 7.0204 5.3961 4.7477 15 7 6.9897 4.6997 6.0379 16 6 6.3170 5.1258 7.1520 17 1 6.3537 4.5434 8.0606 18 6 5.5880 6.3064 7.1132 19 7 5.5428 7.0160 6.0057 20 14 4.6698 6.8873 8.6328 21 1 5.5590 7.7541 9.4472 22 1 3.4690 7.6580 8.2211 23 1 4.2515 5.7119 9.4380 24 6 7.7929 3.4749 5.9483 25 6 7.9601 3.1635 4.4501 26 1 8.8869 2.6357 4.2255 27 6 6.6945 2.4453 3.9406 28 6 3.5713 -0.7507 1.2285 29 6 2.0398 -0.7227 1.2490 30 1 -0.3635 0.5134 0.8902 31 1 -0.3633 0.5144 -0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8931 -0.5133 -0.8903 34 1 1.6570 1.9640 -0.8777 35 1 1.6972 1.9498 0.9023 36 1 3.9411 2.4601 0.0650 37 1 3.9142 1.0148 -0.9780 38 1 7.7521 4.2794 1.6350 39 1 6.3399 5.1029 2.3475 40 1 7.4649 6.3835 4.8725 41 1 6.0073 5.4946 4.3579 42 1 5.0337 7.8412 5.9788 43 1 7.2768 2.6532 6.4447 44 1 8.7686 3.6344 6.4072 45 1 5.8632 2.6177 4.6240 46 1 6.8856 1.3764 3.8467 47 1 3.9415 -1.1756 2.1614 48 1 3.9145 -1.3564 0.3896 49 1 1.6975 -0.1956 2.1396 50 1 1.6569 -1.7433 1.2605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049099099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:20 Heat of formation + Delta-G solvation = -43.193860 kcal Electronic energy + Delta-G solvation = -30526.052925 eV Core-core repulsion = 26553.559259 eV Total energy + Delta-G solvation = -3972.493666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.26537 -40.90725 -39.44947 -38.84872 -36.73944 -34.96597 -34.09963 -32.18903 -31.97148 -31.15933 -29.54518 -27.82194 -27.09671 -26.13588 -24.51119 -24.29950 -22.89251 -21.82455 -21.33554 -20.82978 -20.20905 -18.91807 -18.25610 -18.11902 -17.64686 -17.23579 -16.65541 -16.28533 -15.84858 -15.56488 -15.54821 -15.46378 -15.13131 -14.79046 -14.63756 -14.53391 -14.34200 -14.16572 -13.78416 -13.69877 -13.58613 -13.29793 -13.09024 -12.82785 -12.76497 -12.72752 -12.66864 -12.47377 -12.21540 -11.99899 -11.90601 -11.87225 -11.84162 -11.58162 -11.42819 -11.35967 -11.25675 -10.70452 -10.29069 -9.90784 -9.72751 -8.86808 -7.85354 -5.19798 0.24736 1.15718 1.44728 1.46271 1.54720 2.01951 2.29036 2.49143 3.00076 3.32524 3.41900 3.56117 3.77965 3.82018 3.82199 3.85633 3.93919 4.08209 4.24193 4.27587 4.30126 4.38869 4.49124 4.53804 4.60850 4.69872 4.72741 4.75608 4.81255 4.84279 4.87518 4.90983 4.94643 5.02503 5.04243 5.05059 5.07581 5.12732 5.16381 5.33830 5.37523 5.44263 5.47753 5.49714 5.63444 5.77101 5.94880 6.17427 6.21772 6.52143 6.83302 7.11895 7.80542 8.41577 9.24615 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.003186 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.787919 B = 8784.977864 C = 9671.941448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.128 4.128 4 C 0.069 3.931 5 N -0.578 5.578 6 C 0.507 3.493 7 O -0.538 6.538 8 C 0.512 3.488 9 O -0.533 6.533 10 N -0.578 5.578 11 C 0.122 3.878 12 C -0.111 4.111 13 H 0.125 0.875 14 C 0.196 3.804 15 N -0.624 5.624 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.975 3.025 21 H -0.284 1.284 22 H -0.297 1.297 23 H -0.270 1.270 24 C 0.139 3.861 25 C -0.096 4.096 26 H 0.137 0.863 27 C 0.120 3.880 28 C 0.104 3.896 29 C -0.125 4.125 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.245 0.755 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.047 0.953 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -16.540 -15.309 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.166 4.166 4 C -0.052 4.052 5 N -0.311 5.311 6 C 0.290 3.710 7 O -0.416 6.416 8 C 0.296 3.704 9 O -0.413 6.413 10 N -0.309 5.309 11 C 0.000 4.000 12 C -0.130 4.130 13 H 0.143 0.857 14 C 0.071 3.929 15 N -0.350 5.350 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.804 3.196 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.195 1.195 24 C 0.014 3.986 25 C -0.115 4.115 26 H 0.155 0.845 27 C -0.003 4.003 28 C -0.017 4.017 29 C -0.163 4.163 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.115 0.885 49 H 0.066 0.934 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.048 -16.468 -15.313 22.693 hybrid contribution -0.825 1.019 1.110 1.718 sum -3.873 -15.449 -14.202 21.339 Atomic orbital electron populations 1.21802 0.94205 1.02408 1.01763 1.21161 0.96376 0.94952 0.98376 1.22019 0.94122 0.97881 1.02626 1.22865 0.94917 0.99056 0.88391 1.48085 1.40005 1.15330 1.27653 1.19936 0.81273 0.86255 0.83572 1.90701 1.62856 1.61539 1.26461 1.20009 0.80197 0.86559 0.83643 1.90473 1.60690 1.65028 1.25071 1.48241 1.45225 1.21159 1.16295 1.21947 0.95658 0.83653 0.98766 1.23061 0.99913 0.96545 0.93522 0.85692 1.20808 0.95296 0.92702 0.84098 1.44510 1.57445 1.23507 1.09576 1.19431 1.22563 1.04315 0.90541 0.89974 1.25609 1.01948 0.98095 1.00220 1.70183 1.46290 1.16332 1.27076 0.85121 0.77581 0.78045 0.78866 1.21082 1.22382 1.19524 1.21372 0.94562 0.88475 0.94225 1.23071 0.98306 0.95095 0.95054 0.84528 1.22276 0.96946 0.99203 0.81839 1.21944 0.95175 0.80660 1.03896 1.21978 0.93570 1.02477 0.98281 0.93798 0.91849 0.91464 0.89270 0.88898 0.93653 0.86524 0.89448 0.88630 0.92602 0.97175 0.97371 0.94573 0.94206 0.94654 0.93889 0.87963 0.89983 0.88508 0.93380 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.09 -1.24 2.68 -10.77 -0.03 -1.27 16 3 C -0.13 -2.30 5.36 30.67 0.16 -2.13 16 4 C 0.07 1.48 5.98 86.36 0.52 2.00 16 5 N -0.58 -14.25 2.97 -820.49 -2.44 -16.69 16 6 C 0.51 15.91 7.68 87.27 0.67 16.58 16 7 O -0.54 -18.63 13.26 -3.24 -0.04 -18.68 16 8 C 0.51 17.29 7.76 87.27 0.68 17.97 16 9 O -0.53 -18.36 13.49 -3.25 -0.04 -18.40 16 10 N -0.58 -19.92 3.31 -818.58 -2.71 -22.63 16 11 C 0.12 4.03 6.23 86.59 0.54 4.57 16 12 C -0.11 -3.82 4.02 -9.49 -0.04 -3.86 16 13 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 14 C 0.20 9.52 4.75 86.58 0.41 9.93 16 15 N -0.62 -31.69 3.37 -697.91 -2.35 -34.04 16 16 C -0.24 -13.47 10.25 84.03 0.86 -12.61 16 17 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.78 5.48 84.86 0.47 -3.32 16 19 N -0.95 -57.65 10.25 21.65 0.22 -57.43 16 20 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.14 5.43 6.37 86.65 0.55 5.99 16 25 C -0.10 -3.03 4.19 -9.25 -0.04 -3.06 16 26 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 27 C 0.12 4.13 5.22 86.73 0.45 4.58 16 28 C 0.10 1.94 6.44 86.36 0.56 2.50 16 29 C -0.13 -1.94 5.36 30.67 0.16 -1.78 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 3.20 4.31 -47.75 -0.21 2.99 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 2.12 7.44 -2.39 -0.02 2.10 16 40 H 0.01 0.55 7.46 -2.39 -0.02 0.53 16 41 H 0.01 0.46 6.50 -2.39 -0.02 0.44 16 42 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.04 1.55 7.94 -2.39 -0.02 1.53 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.82 7.72 -2.39 -0.02 1.80 16 46 H 0.10 3.30 6.27 -2.39 -0.01 3.28 16 47 H 0.08 1.77 7.00 -2.39 -0.02 1.75 16 48 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -70.69 379.27 1.98 -68.71 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.73 Total: 15.67 kcal Atomic # 6 Polarization: 28.39 SS G_CDS: 6.59 Total: 34.98 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -7.28 Total: -130.80 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.09 Total: -37.08 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.69 1.98 -68.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.514 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds