Wall clock time and date at job start Tue Mar 31 2020 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.70150 * 2 1 4 4 O 1.21284 * 120.00082 * 119.79668 * 3 2 1 5 5 N 1.34775 * 120.00012 * 299.80513 * 3 2 1 6 6 C 1.46799 * 119.57905 * 5.18809 * 5 3 2 7 7 C 1.53034 * 107.82214 * 232.02133 * 6 5 3 8 8 C 1.52745 * 108.52092 * 302.14146 * 7 6 5 9 9 C 1.53010 * 110.80045 * 63.65390 * 8 7 6 10 10 H 1.09004 * 111.38577 * 68.76289 * 9 8 7 11 11 C 1.45126 * 119.57627 * 185.46502 * 5 3 2 12 12 H 1.09003 * 109.96731 * 11.91499 * 11 5 3 13 13 C 1.54416 * 111.60551 * 248.62827 * 11 5 3 14 14 C 1.54563 * 102.44725 * 203.41944 * 13 11 5 15 15 N 1.47122 * 107.25378 * 21.67473 * 14 13 11 16 16 C 1.36941 * 125.76655 * 182.57994 * 15 14 13 17 17 H 1.08001 * 119.99914 * 180.02562 * 16 15 14 18 18 C 1.38807 * 119.99827 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00690 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99670 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47266 * 90.00063 * 20 18 16 22 22 H 1.48501 * 109.47352 * 209.99740 * 20 18 16 23 23 H 1.48505 * 109.47285 * 330.00228 * 20 18 16 24 24 C 1.53344 * 109.67861 * 239.48708 * 2 1 3 25 25 C 1.52922 * 108.81553 * 172.81379 * 24 2 1 26 26 N 1.45754 * 110.48085 * 50.67038 * 25 24 2 27 27 C 1.33347 * 124.11368 * 340.94776 * 26 25 24 28 28 O 1.21274 * 118.25031 * 182.17807 * 27 26 25 29 29 C 1.50180 * 123.50433 * 2.20071 * 27 26 25 30 30 H 1.09003 * 109.46758 * 164.77616 * 1 2 3 31 31 H 1.08995 * 109.47379 * 284.77432 * 1 2 3 32 32 H 1.08998 * 109.46945 * 44.78101 * 1 2 3 33 33 H 1.09003 * 109.83082 * 351.59885 * 6 5 3 34 34 H 1.08997 * 109.83487 * 112.54465 * 6 5 3 35 35 H 1.09001 * 109.70406 * 182.37080 * 7 6 5 36 36 H 1.08999 * 109.68111 * 61.89293 * 7 6 5 37 37 H 1.09000 * 109.20563 * 303.30958 * 8 7 6 38 38 H 1.09000 * 109.21002 * 183.99751 * 8 7 6 39 39 H 1.08999 * 110.81554 * 321.66203 * 13 11 5 40 40 H 1.09004 * 110.81110 * 85.18581 * 13 11 5 41 41 H 1.08998 * 109.89274 * 262.25500 * 14 13 11 42 42 H 1.09005 * 110.01434 * 141.15088 * 14 13 11 43 43 H 0.96994 * 120.00446 * 180.02562 * 19 18 16 44 44 H 1.09009 * 109.60335 * 52.97209 * 24 2 1 45 45 H 1.09003 * 109.60503 * 292.65580 * 24 2 1 46 46 H 1.09002 * 109.29978 * 170.98122 * 25 24 2 47 47 H 1.08999 * 109.29782 * 290.57004 * 25 24 2 48 48 H 0.97009 * 117.94273 * 160.92593 * 26 25 24 49 49 H 1.09005 * 109.40002 * 102.54637 * 29 27 26 50 50 H 1.09001 * 109.40034 * 222.28445 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.7339 1.8138 0.9115 5 7 1.7190 2.2488 -1.0128 6 6 0.7845 1.7987 -2.0516 7 6 1.4460 2.0355 -3.4111 8 6 1.7861 3.5196 -3.5333 9 6 2.8152 3.9299 -2.4780 10 1 3.7888 3.4819 -2.6769 11 6 2.3085 3.5739 -1.0657 12 1 3.1250 3.6471 -0.3473 13 6 1.2562 4.6749 -0.8109 14 6 1.8939 5.9087 -1.4891 15 7 2.8679 5.4110 -2.4731 16 6 3.6849 6.1855 -3.2528 17 1 4.3679 5.7199 -3.9479 18 6 3.6352 7.5688 -3.1498 19 7 2.8032 8.1363 -2.3024 20 14 4.7492 8.6252 -4.2140 21 1 4.0587 8.9438 -5.4896 22 1 5.0696 9.8854 -3.4967 23 1 6.0048 7.8864 -4.5020 24 6 2.0464 -0.7331 -1.2439 25 6 3.5647 -0.5674 -1.3193 26 7 4.1804 -0.9232 -0.0470 27 6 3.5231 -0.9803 1.1118 28 8 4.1498 -1.2496 2.1145 29 6 2.0481 -0.7293 1.2415 30 1 -0.3633 -0.9916 -0.2699 31 1 -0.3634 0.2620 0.9936 32 1 -0.3633 0.7294 -0.7239 33 1 0.5734 0.7370 -1.9242 34 1 -0.1413 2.3707 -1.9892 35 1 0.7597 1.7500 -4.2084 36 1 2.3582 1.4434 -3.4836 37 1 0.8786 4.1078 -3.3973 38 1 2.1930 3.7137 -4.5257 39 1 0.3073 4.4206 -1.2833 40 1 1.1247 4.8452 0.2577 41 1 2.4004 6.5215 -0.7434 42 1 1.1261 6.4965 -1.9922 43 1 2.7682 9.1029 -2.2307 44 1 1.5872 -0.3074 -2.1363 45 1 1.7971 -1.7920 -1.1742 46 1 3.9591 -1.2134 -2.1037 47 1 3.8026 0.4703 -1.5535 48 1 5.1277 -1.1320 -0.0431 49 1 1.5264 -1.6810 1.3431 50 1 1.8610 -0.1192 2.1252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049549788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:08 Heat of formation + Delta-G solvation = -23.523787 kcal Electronic energy + Delta-G solvation = -32011.401146 eV Core-core repulsion = 28039.760439 eV Total energy + Delta-G solvation = -3971.640707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64626 -39.71420 -38.13149 -36.66211 -35.39945 -34.27250 -32.48415 -32.18176 -29.94368 -29.09544 -28.71452 -27.82270 -25.36591 -24.37729 -24.01799 -22.63009 -22.10877 -20.70783 -20.08393 -19.13630 -18.18183 -17.42548 -16.95031 -16.74942 -16.19321 -15.83903 -15.63727 -14.98734 -14.84493 -14.53281 -14.34470 -14.14426 -13.91338 -13.67982 -13.45052 -13.21754 -13.19006 -12.68054 -12.58517 -12.34611 -12.20153 -12.09841 -11.96951 -11.82717 -11.53076 -11.35804 -11.16772 -11.04834 -10.87858 -10.79667 -10.65476 -10.39887 -10.12653 -10.09924 -9.82359 -9.68374 -9.66378 -9.42641 -9.16545 -8.65328 -8.32738 -6.89770 -5.74114 -3.08628 2.64537 2.66992 3.04256 3.21307 3.37907 3.43323 3.45296 4.08739 4.18195 4.27572 4.44620 4.47364 4.61821 4.80807 4.96256 5.01223 5.05073 5.13822 5.20592 5.25714 5.28060 5.36370 5.38290 5.42937 5.48835 5.53139 5.58981 5.62437 5.66500 5.73833 5.81890 5.82889 5.92218 6.04676 6.16062 6.23231 6.30908 6.47637 6.53537 6.67256 6.67950 6.92753 7.00641 7.25213 7.51220 7.54035 7.59387 7.79611 8.18323 8.19895 8.28429 9.17182 9.77080 10.42535 11.36984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.003504 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.807934 B = 7988.122106 C = 8233.670436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C 0.517 3.483 4 O -0.531 6.531 5 N -0.588 5.588 6 C 0.083 3.917 7 C -0.136 4.136 8 C -0.130 4.130 9 C 0.157 3.843 10 H 0.057 0.943 11 C 0.131 3.869 12 H 0.099 0.901 13 C -0.151 4.151 14 C 0.180 3.820 15 N -0.597 5.597 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C -0.137 4.137 25 C 0.105 3.895 26 N -0.719 5.719 27 C 0.533 3.467 28 O -0.559 6.559 29 C -0.111 4.111 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.399 0.601 49 H 0.104 0.896 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 -20.447 -1.369 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.088 4.088 3 C 0.304 3.696 4 O -0.407 6.407 5 N -0.319 5.319 6 C -0.039 4.039 7 C -0.175 4.175 8 C -0.170 4.170 9 C 0.048 3.952 10 H 0.075 0.925 11 C 0.027 3.973 12 H 0.117 0.883 13 C -0.190 4.190 14 C 0.055 3.945 15 N -0.321 5.321 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.174 4.174 25 C -0.019 4.019 26 N -0.371 5.371 27 C 0.321 3.679 28 O -0.438 6.438 29 C -0.151 4.151 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.234 0.766 49 H 0.122 0.878 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.373 -20.009 -0.386 21.328 hybrid contribution 0.810 0.774 -0.808 1.382 sum -6.562 -19.235 -1.194 20.358 Atomic orbital electron populations 1.22276 0.91576 1.03691 1.04200 1.20918 0.98009 0.93215 0.96674 1.20326 0.80531 0.86736 0.82044 1.90747 1.38221 1.76785 1.34988 1.47533 1.45048 1.14945 1.24389 1.22426 0.92787 1.00806 0.87871 1.21913 1.00566 0.99116 0.95878 1.22120 1.00929 0.93043 1.00894 1.21318 0.95862 0.86790 0.91182 0.92476 1.21793 0.96416 0.79780 0.99314 0.88298 1.23091 0.97903 0.97525 1.00463 1.21176 0.91548 0.90458 0.91299 1.44687 1.44197 0.98236 1.45014 1.19017 1.14142 0.87768 1.14725 0.90474 1.24787 0.99498 0.96487 0.99422 1.69951 1.39139 1.09332 1.38321 0.86138 0.80051 0.80117 0.79542 1.21637 1.21671 1.20704 1.22321 0.95221 1.01752 0.98098 1.21416 0.93340 1.01597 0.85578 1.45366 1.13449 1.70620 1.07670 1.19909 0.90269 0.75239 0.82530 1.90737 1.68246 1.49530 1.35283 1.21555 0.92115 1.02271 0.99158 0.90953 0.91322 0.89924 0.87958 0.91125 0.91220 0.91811 0.91826 0.92147 0.92296 0.92083 0.93092 0.94029 0.93706 0.87908 0.89627 0.89969 0.91248 0.76591 0.87758 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.06 37.16 0.30 -0.78 16 2 C -0.08 -0.79 0.51 -155.47 -0.08 -0.87 16 3 C 0.52 7.17 4.82 -10.98 -0.05 7.12 16 4 O -0.53 -9.92 14.57 5.55 0.08 -9.83 16 5 N -0.59 -7.90 2.74 -165.28 -0.45 -8.35 16 6 C 0.08 0.81 3.67 -3.86 -0.01 0.80 16 7 C -0.14 -1.43 5.79 -26.84 -0.16 -1.59 16 8 C -0.13 -2.04 5.10 -26.86 -0.14 -2.18 16 9 C 0.16 2.99 3.60 -66.35 -0.24 2.75 16 10 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 11 C 0.13 2.33 3.08 -67.29 -0.21 2.12 16 12 H 0.10 2.07 7.01 -51.93 -0.36 1.71 16 13 C -0.15 -2.80 6.08 -25.17 -0.15 -2.96 16 14 C 0.18 4.26 5.19 -2.88 -0.01 4.25 16 15 N -0.60 -14.45 2.91 -162.19 -0.47 -14.92 16 16 C -0.23 -6.14 10.29 -15.06 -0.16 -6.29 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 19 N -0.92 -26.61 10.33 55.49 0.57 -26.03 16 20 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.14 -0.93 4.55 -26.59 -0.12 -1.05 16 25 C 0.11 0.90 6.61 -4.48 -0.03 0.87 16 26 N -0.72 -8.02 5.44 -61.39 -0.33 -8.35 16 27 C 0.53 7.38 6.81 -11.87 -0.08 7.30 16 28 O -0.56 -10.11 17.78 5.56 0.10 -10.01 16 29 C -0.11 -1.21 4.41 -28.12 -0.12 -1.33 16 30 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16 31 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.08 0.55 4.61 -51.93 -0.24 0.31 16 33 H 0.10 0.69 2.51 -51.93 -0.13 0.56 16 34 H 0.07 0.70 7.46 -51.93 -0.39 0.31 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 37 H 0.06 1.10 7.12 -51.93 -0.37 0.73 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.99 6.82 -51.93 -0.35 0.64 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 42 H 0.04 1.08 7.59 -51.93 -0.39 0.68 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.10 0.56 4.77 -51.92 -0.25 0.31 16 45 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.75 7.38 -51.93 -0.38 0.36 16 48 H 0.40 4.15 8.80 -40.82 -0.36 3.79 16 49 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 50 H 0.11 1.40 7.72 -51.93 -0.40 1.00 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -34.90 365.03 -9.15 -44.05 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.77 Total: 3.26 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.36 Total: 7.91 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.69 Total: -57.66 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.90 -9.15 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049549788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.524 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds