Wall clock time and date at job start Tue Mar 31 2020 19:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.70150 * 2 1 4 4 O 1.21284 * 120.00082 * 119.79668 * 3 2 1 5 5 N 1.34775 * 120.00012 * 299.80513 * 3 2 1 6 6 C 1.46799 * 119.57905 * 5.18809 * 5 3 2 7 7 C 1.53034 * 107.82214 * 232.02133 * 6 5 3 8 8 C 1.52745 * 108.52092 * 302.14146 * 7 6 5 9 9 C 1.53010 * 110.80045 * 63.65390 * 8 7 6 10 10 H 1.09004 * 111.38577 * 68.76289 * 9 8 7 11 11 C 1.45126 * 119.57627 * 185.46502 * 5 3 2 12 12 H 1.09003 * 109.96731 * 11.91499 * 11 5 3 13 13 C 1.54416 * 111.60551 * 248.62827 * 11 5 3 14 14 C 1.54563 * 102.44725 * 203.41944 * 13 11 5 15 15 N 1.47122 * 107.25378 * 21.67473 * 14 13 11 16 16 C 1.36941 * 125.76655 * 182.57994 * 15 14 13 17 17 H 1.08001 * 119.99914 * 180.02562 * 16 15 14 18 18 C 1.38807 * 119.99827 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00690 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99670 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47266 * 90.00063 * 20 18 16 22 22 H 1.48501 * 109.47352 * 209.99740 * 20 18 16 23 23 H 1.48505 * 109.47285 * 330.00228 * 20 18 16 24 24 C 1.53344 * 109.67861 * 239.48708 * 2 1 3 25 25 C 1.52922 * 108.81553 * 172.81379 * 24 2 1 26 26 N 1.45754 * 110.48085 * 50.67038 * 25 24 2 27 27 C 1.33347 * 124.11368 * 340.94776 * 26 25 24 28 28 O 1.21274 * 118.25031 * 182.17807 * 27 26 25 29 29 C 1.50180 * 123.50433 * 2.20071 * 27 26 25 30 30 H 1.09003 * 109.46758 * 164.77616 * 1 2 3 31 31 H 1.08995 * 109.47379 * 284.77432 * 1 2 3 32 32 H 1.08998 * 109.46945 * 44.78101 * 1 2 3 33 33 H 1.09003 * 109.83082 * 351.59885 * 6 5 3 34 34 H 1.08997 * 109.83487 * 112.54465 * 6 5 3 35 35 H 1.09001 * 109.70406 * 182.37080 * 7 6 5 36 36 H 1.08999 * 109.68111 * 61.89293 * 7 6 5 37 37 H 1.09000 * 109.20563 * 303.30958 * 8 7 6 38 38 H 1.09000 * 109.21002 * 183.99751 * 8 7 6 39 39 H 1.08999 * 110.81554 * 321.66203 * 13 11 5 40 40 H 1.09004 * 110.81110 * 85.18581 * 13 11 5 41 41 H 1.08998 * 109.89274 * 262.25500 * 14 13 11 42 42 H 1.09005 * 110.01434 * 141.15088 * 14 13 11 43 43 H 0.96994 * 120.00446 * 180.02562 * 19 18 16 44 44 H 1.09009 * 109.60335 * 52.97209 * 24 2 1 45 45 H 1.09003 * 109.60503 * 292.65580 * 24 2 1 46 46 H 1.09002 * 109.29978 * 170.98122 * 25 24 2 47 47 H 1.08999 * 109.29782 * 290.57004 * 25 24 2 48 48 H 0.97009 * 117.94273 * 160.92593 * 26 25 24 49 49 H 1.09005 * 109.40002 * 102.54637 * 29 27 26 50 50 H 1.09001 * 109.40034 * 222.28445 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.7339 1.8138 0.9115 5 7 1.7190 2.2488 -1.0128 6 6 0.7845 1.7987 -2.0516 7 6 1.4460 2.0355 -3.4111 8 6 1.7861 3.5196 -3.5333 9 6 2.8152 3.9299 -2.4780 10 1 3.7888 3.4819 -2.6769 11 6 2.3085 3.5739 -1.0657 12 1 3.1250 3.6471 -0.3473 13 6 1.2562 4.6749 -0.8109 14 6 1.8939 5.9087 -1.4891 15 7 2.8679 5.4110 -2.4731 16 6 3.6849 6.1855 -3.2528 17 1 4.3679 5.7199 -3.9479 18 6 3.6352 7.5688 -3.1498 19 7 2.8032 8.1363 -2.3024 20 14 4.7492 8.6252 -4.2140 21 1 4.0587 8.9438 -5.4896 22 1 5.0696 9.8854 -3.4967 23 1 6.0048 7.8864 -4.5020 24 6 2.0464 -0.7331 -1.2439 25 6 3.5647 -0.5674 -1.3193 26 7 4.1804 -0.9232 -0.0470 27 6 3.5231 -0.9803 1.1118 28 8 4.1498 -1.2496 2.1145 29 6 2.0481 -0.7293 1.2415 30 1 -0.3633 -0.9916 -0.2699 31 1 -0.3634 0.2620 0.9936 32 1 -0.3633 0.7294 -0.7239 33 1 0.5734 0.7370 -1.9242 34 1 -0.1413 2.3707 -1.9892 35 1 0.7597 1.7500 -4.2084 36 1 2.3582 1.4434 -3.4836 37 1 0.8786 4.1078 -3.3973 38 1 2.1930 3.7137 -4.5257 39 1 0.3073 4.4206 -1.2833 40 1 1.1247 4.8452 0.2577 41 1 2.4004 6.5215 -0.7434 42 1 1.1261 6.4965 -1.9922 43 1 2.7682 9.1029 -2.2307 44 1 1.5872 -0.3074 -2.1363 45 1 1.7971 -1.7920 -1.1742 46 1 3.9591 -1.2134 -2.1037 47 1 3.8026 0.4703 -1.5535 48 1 5.1277 -1.1320 -0.0431 49 1 1.5264 -1.6810 1.3431 50 1 1.8610 -0.1192 2.1252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049549788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:06 Heat of formation + Delta-G solvation = -49.658228 kcal Electronic energy + Delta-G solvation = -32012.534421 eV Core-core repulsion = 28039.760439 eV Total energy + Delta-G solvation = -3972.773982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62877 -40.90193 -39.48037 -37.68781 -36.76346 -35.24095 -34.01449 -33.68367 -30.99859 -30.64960 -29.90615 -28.77250 -26.75588 -26.03743 -24.79056 -23.65476 -23.28702 -21.98951 -21.65119 -20.19536 -19.39189 -18.81123 -18.36701 -17.77965 -17.17226 -16.81676 -16.73615 -16.66504 -16.18599 -15.89718 -15.65421 -15.22368 -15.02516 -14.81994 -14.45343 -14.39217 -14.17094 -14.06455 -13.79285 -13.45238 -13.28738 -13.23149 -12.99561 -12.93767 -12.77889 -12.73349 -12.57715 -12.33017 -12.23599 -12.14081 -12.05619 -11.87379 -11.76351 -11.53480 -11.31359 -11.15502 -10.84031 -10.72393 -10.51694 -10.08806 -9.57529 -8.89896 -7.85304 -5.21082 1.43952 1.46151 1.54361 1.60022 1.64296 1.93647 2.37468 2.48833 3.26817 3.33435 3.47665 3.54366 3.57902 3.73939 3.83982 3.90478 4.00645 4.07165 4.11166 4.16594 4.37057 4.38924 4.41773 4.55159 4.56829 4.59011 4.66544 4.68712 4.73213 4.78502 4.86178 4.88069 4.94441 5.01587 5.06507 5.09100 5.18767 5.26378 5.37375 5.40261 5.43351 5.56883 5.64306 5.67330 5.73735 5.80306 6.17124 6.34634 6.47623 7.07528 7.18550 7.20835 7.74732 8.39939 9.24777 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.003504 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.807934 B = 7988.122106 C = 8233.670436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.074 4.074 3 C 0.511 3.489 4 O -0.590 6.590 5 N -0.583 5.583 6 C 0.077 3.923 7 C -0.126 4.126 8 C -0.119 4.119 9 C 0.153 3.847 10 H 0.048 0.952 11 C 0.149 3.851 12 H 0.056 0.944 13 C -0.133 4.133 14 C 0.192 3.808 15 N -0.618 5.618 16 C -0.235 4.235 17 H 0.083 0.917 18 C -0.066 4.066 19 N -0.953 5.953 20 Si 0.976 3.024 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.132 4.132 25 C 0.096 3.904 26 N -0.715 5.715 27 C 0.521 3.479 28 O -0.617 6.617 29 C -0.109 4.109 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.004 0.996 42 H 0.012 0.988 43 H 0.245 0.755 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.043 0.957 48 H 0.398 0.602 49 H 0.144 0.856 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -24.425 -4.103 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.078 4.078 3 C 0.301 3.699 4 O -0.470 6.470 5 N -0.313 5.313 6 C -0.043 4.043 7 C -0.164 4.164 8 C -0.159 4.159 9 C 0.046 3.954 10 H 0.066 0.934 11 C 0.043 3.957 12 H 0.075 0.925 13 C -0.172 4.172 14 C 0.066 3.934 15 N -0.343 5.343 16 C -0.364 4.364 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.602 5.602 20 Si 0.804 3.196 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.195 1.195 24 C -0.169 4.169 25 C -0.027 4.027 26 N -0.364 5.364 27 C 0.310 3.690 28 O -0.500 6.500 29 C -0.149 4.149 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.022 0.978 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.061 0.939 48 H 0.233 0.767 49 H 0.162 0.838 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.655 -24.048 -3.202 26.110 hybrid contribution 1.593 2.014 0.058 2.568 sum -8.062 -22.034 -3.143 23.672 Atomic orbital electron populations 1.22350 0.88595 1.06401 1.04245 1.20964 1.00054 0.89323 0.97416 1.21332 0.79280 0.88530 0.80767 1.90737 1.40813 1.78177 1.37287 1.47527 1.45302 1.12919 1.25569 1.22875 0.91866 1.03540 0.86002 1.21911 1.02322 0.94669 0.97514 1.21896 0.98574 0.97117 0.98336 1.21540 0.96867 0.83797 0.93159 0.93358 1.21175 0.95055 0.82283 0.97211 0.92545 1.22892 0.98885 0.95520 0.99906 1.20827 0.90492 0.91931 0.90112 1.44951 1.43957 1.00709 1.44710 1.19404 1.14064 0.88413 1.14511 0.89937 1.25610 1.01297 0.97849 1.01090 1.70179 1.40966 1.08866 1.40165 0.85118 0.78659 0.77952 0.77847 1.20925 1.22532 1.19514 1.22469 0.93396 1.03816 0.97195 1.21712 0.95163 1.00910 0.84933 1.45476 1.13637 1.69095 1.08204 1.20561 0.91631 0.74411 0.82379 1.90702 1.69651 1.52390 1.37302 1.21593 0.90404 1.03893 0.98994 0.86803 0.92151 0.89225 0.83583 0.90154 0.87257 0.90411 0.93281 0.93357 0.89510 0.92312 0.97807 0.96950 0.94536 0.85436 0.85816 0.86249 0.93877 0.76690 0.83823 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.06 71.98 0.58 -0.65 16 2 C -0.07 -1.10 0.51 -52.80 -0.03 -1.13 16 3 C 0.51 13.52 4.82 87.66 0.42 13.95 16 4 O -0.59 -22.88 14.57 -3.04 -0.04 -22.93 16 5 N -0.58 -14.55 2.74 -795.21 -2.18 -16.73 16 6 C 0.08 1.12 3.67 86.33 0.32 1.44 16 7 C -0.13 -2.01 5.79 30.52 0.18 -1.83 16 8 C -0.12 -3.54 5.10 30.51 0.16 -3.38 16 9 C 0.15 5.91 3.60 45.07 0.16 6.07 16 10 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 11 C 0.15 5.39 3.08 46.14 0.14 5.53 16 12 H 0.06 2.53 7.01 -2.39 -0.02 2.52 16 13 C -0.13 -5.08 6.08 31.61 0.19 -4.89 16 14 C 0.19 9.68 5.19 86.79 0.45 10.13 16 15 N -0.62 -31.26 2.91 -667.06 -1.94 -33.20 16 16 C -0.23 -13.06 10.29 84.03 0.86 -12.19 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 19 N -0.95 -58.10 10.33 21.65 0.22 -57.88 16 20 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C -0.13 -1.01 4.55 30.68 0.14 -0.87 16 25 C 0.10 1.29 6.61 86.49 0.57 1.86 16 26 N -0.71 -14.98 5.44 -467.32 -2.54 -17.53 16 27 C 0.52 14.17 6.81 87.72 0.60 14.77 16 28 O -0.62 -23.08 17.78 -3.01 -0.05 -23.14 16 29 C -0.11 -2.15 4.41 29.69 0.13 -2.02 16 30 H 0.11 0.05 8.05 -2.39 -0.02 0.03 16 31 H 0.06 0.63 8.06 -2.39 -0.02 0.61 16 32 H 0.09 0.60 4.61 -2.39 -0.01 0.59 16 33 H 0.15 0.90 2.51 -2.39 -0.01 0.90 16 34 H 0.08 1.13 7.46 -2.39 -0.02 1.11 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.10 8.03 -2.39 -0.02 1.08 16 37 H 0.05 1.60 7.12 -2.39 -0.02 1.59 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 2.83 6.82 -2.39 -0.02 2.82 16 40 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.00 0.21 7.30 -2.39 -0.02 0.20 16 42 H 0.01 0.68 7.59 -2.38 -0.02 0.66 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.13 0.38 4.77 -2.38 -0.01 0.36 16 45 H 0.12 0.21 8.13 -2.39 -0.02 0.19 16 46 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.04 0.83 7.38 -2.39 -0.02 0.81 16 48 H 0.40 8.15 8.80 -92.70 -0.82 7.33 16 49 H 0.14 1.65 8.10 -2.38 -0.02 1.63 16 50 H 0.08 2.12 7.72 -2.39 -0.02 2.11 16 Total: -1.00 -87.85 365.03 0.98 -86.87 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.15 Total: 12.92 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 5.34 Total: 23.50 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -6.44 Total: -125.33 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.10 Total: -46.06 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -87.85 0.98 -86.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049549788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.210 kcal (2) G-P(sol) polarization free energy of solvation -87.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds