Wall clock time and date at job start Tue Mar 31 2020 19:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.67078 * 2 1 4 4 O 1.21283 * 119.99862 * 231.09892 * 3 2 1 5 5 N 1.34780 * 120.00076 * 51.09663 * 3 2 1 6 6 C 1.45731 * 117.76019 * 2.83464 * 5 3 2 7 7 C 1.53052 * 109.56024 * 141.08303 * 6 5 3 8 8 C 1.52941 * 108.49391 * 53.79308 * 7 6 5 9 9 C 1.52926 * 109.79432 * 294.01450 * 8 7 6 10 10 H 1.09003 * 110.50869 * 292.89764 * 9 8 7 11 11 C 1.44191 * 117.75945 * 182.56780 * 5 3 2 12 12 H 1.08996 * 109.22655 * 333.41043 * 11 5 3 13 13 C 1.54567 * 111.47729 * 93.66557 * 11 5 3 14 14 C 1.54057 * 103.66780 * 153.28327 * 13 11 5 15 15 N 1.46880 * 107.70975 * 342.84752 * 14 13 11 16 16 C 1.36938 * 125.58056 * 177.00707 * 15 14 13 17 17 H 1.08003 * 119.99518 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00227 * 0.02562 * 16 15 14 19 19 N 1.31612 * 119.99915 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47107 * 89.99721 * 20 18 16 22 22 H 1.48496 * 109.46983 * 209.99675 * 20 18 16 23 23 H 1.48502 * 109.47070 * 329.99699 * 20 18 16 24 24 C 1.53338 * 109.67353 * 239.49938 * 2 1 3 25 25 C 1.52915 * 108.67503 * 172.69799 * 24 2 1 26 26 N 1.45759 * 110.48738 * 50.75483 * 25 24 2 27 27 C 1.33356 * 124.10279 * 340.92809 * 26 25 24 28 28 O 1.21276 * 118.24186 * 182.24290 * 27 26 25 29 29 C 1.50173 * 123.50796 * 2.21786 * 27 26 25 30 30 H 1.09002 * 109.47386 * 180.49771 * 1 2 3 31 31 H 1.09003 * 109.47328 * 300.49724 * 1 2 3 32 32 H 1.08998 * 109.47381 * 60.49696 * 1 2 3 33 33 H 1.09007 * 109.45604 * 261.10680 * 6 5 3 34 34 H 1.09000 * 109.45998 * 21.05022 * 6 5 3 35 35 H 1.08996 * 109.63381 * 173.49854 * 7 6 5 36 36 H 1.08998 * 109.62884 * 293.89743 * 7 6 5 37 37 H 1.08997 * 109.41335 * 54.11504 * 8 7 6 38 38 H 1.09003 * 109.41548 * 173.91287 * 8 7 6 39 39 H 1.09001 * 110.62592 * 34.73449 * 13 11 5 40 40 H 1.08997 * 110.71094 * 271.87597 * 13 11 5 41 41 H 1.09002 * 109.81052 * 223.29434 * 14 13 11 42 42 H 1.09010 * 109.86440 * 102.42762 * 14 13 11 43 43 H 0.96998 * 120.00496 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.60695 * 52.94370 * 24 2 1 45 45 H 1.09002 * 109.60488 * 292.45994 * 24 2 1 46 46 H 1.09004 * 109.30082 * 171.06230 * 25 24 2 47 47 H 1.08994 * 109.30531 * 290.44055 * 25 24 2 48 48 H 0.96996 * 117.94829 * 160.91773 * 26 25 24 49 49 H 1.09003 * 109.39751 * 222.28907 * 29 27 26 50 50 H 1.09003 * 109.32880 * 102.50809 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.8625 1.7680 -0.8174 5 7 1.5739 2.3004 0.9083 6 6 0.6309 1.8133 1.9070 7 6 0.9350 2.4634 3.2588 8 6 0.9520 3.9816 3.0742 9 6 2.1234 4.3809 2.1759 10 1 3.0720 4.1848 2.6757 11 6 2.0496 3.6593 0.8291 12 1 3.0347 3.6680 0.3627 13 6 1.0960 4.5449 -0.0049 14 6 1.3251 5.9595 0.5607 15 7 1.9891 5.8177 1.8632 16 6 2.4142 6.8492 2.6573 17 1 2.8943 6.6409 3.6020 18 6 2.2280 8.1625 2.2480 19 7 1.6434 8.4163 1.0965 20 14 2.8086 9.5695 3.3309 21 1 4.2082 9.9198 2.9793 22 1 1.9343 10.7509 3.1185 23 1 2.7448 9.1563 4.7558 24 6 2.0462 -0.7328 -1.2441 25 6 3.5641 -0.5627 -1.3180 26 7 4.1799 -0.9184 -0.0456 27 6 3.5217 -0.9784 1.1127 28 8 4.1487 -1.2461 2.1157 29 6 2.0460 -0.7317 1.2414 30 1 -0.3634 -1.0276 0.0089 31 1 -0.3634 0.5215 0.8855 32 1 -0.3634 0.5061 -0.8944 33 1 -0.3843 2.0674 1.6021 34 1 0.7229 0.7309 1.9958 35 1 0.1630 2.1906 3.9783 36 1 1.9066 2.1244 3.6179 37 1 0.0170 4.3010 2.6140 38 1 1.0596 4.4636 4.0459 39 1 0.0605 4.2373 0.1407 40 1 1.3606 4.5075 -1.0616 41 1 0.3684 6.4663 0.6869 42 1 1.9594 6.5311 -0.1170 43 1 1.5130 9.3340 0.8105 44 1 1.5867 -0.3073 -2.1362 45 1 1.8000 -1.7923 -1.1730 46 1 3.9610 -1.2066 -2.1028 47 1 3.7993 0.4750 -1.5544 48 1 5.1277 -1.1245 -0.0412 49 1 1.8565 -0.1230 2.1256 50 1 1.5281 -1.6857 1.3409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049549790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:16 Heat of formation + Delta-G solvation = -35.882731 kcal Electronic energy + Delta-G solvation = -31954.645086 eV Core-core repulsion = 27982.468455 eV Total energy + Delta-G solvation = -3972.176632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.73367 -40.90958 -39.52891 -37.34509 -37.21166 -35.30931 -34.05822 -33.82372 -31.01440 -30.55749 -29.96967 -28.84251 -26.71159 -26.28427 -24.61478 -23.85523 -23.25489 -22.08382 -21.40337 -20.37981 -19.53921 -18.87161 -18.43895 -18.03125 -17.06062 -16.82611 -16.73360 -16.40207 -16.10388 -16.03033 -15.58435 -15.31311 -15.14521 -14.97059 -14.61254 -14.42485 -14.19398 -13.98319 -13.70253 -13.47760 -13.33833 -13.23782 -13.00543 -12.93586 -12.82453 -12.63244 -12.52198 -12.34137 -12.22667 -12.17514 -12.05336 -11.87322 -11.75166 -11.58989 -11.27995 -11.16974 -10.81406 -10.72103 -10.59285 -9.76242 -9.51100 -8.92593 -7.86303 -5.22774 1.43856 1.45882 1.54256 1.55313 1.59915 1.93799 2.38743 2.48013 3.23853 3.31740 3.47537 3.55872 3.56863 3.76635 3.83424 3.87903 3.96183 4.01426 4.06093 4.13784 4.31211 4.40777 4.45667 4.54992 4.57242 4.61693 4.63680 4.66151 4.77756 4.81205 4.84689 4.94657 4.98160 5.01701 5.03200 5.09030 5.17258 5.28608 5.36565 5.39525 5.42051 5.54354 5.61926 5.71577 5.72587 5.79661 6.17278 6.37825 6.41614 7.07663 7.18767 7.20149 7.74022 8.37905 9.23370 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.003432 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.027835 B = 8155.706352 C = 8258.422515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C 0.504 3.496 4 O -0.564 6.564 5 N -0.582 5.582 6 C 0.083 3.917 7 C -0.129 4.129 8 C -0.119 4.119 9 C 0.154 3.846 10 H 0.036 0.964 11 C 0.156 3.844 12 H 0.059 0.941 13 C -0.130 4.130 14 C 0.191 3.809 15 N -0.615 5.615 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.950 5.950 20 Si 0.977 3.023 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.268 1.268 24 C -0.106 4.106 25 C 0.077 3.923 26 N -0.708 5.708 27 C 0.507 3.493 28 O -0.612 6.612 29 C -0.132 4.132 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.011 0.989 42 H 0.009 0.991 43 H 0.247 0.753 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.398 0.602 49 H 0.114 0.886 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 -24.383 -3.779 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.077 4.077 3 C 0.294 3.706 4 O -0.443 6.443 5 N -0.313 5.313 6 C -0.037 4.037 7 C -0.167 4.167 8 C -0.159 4.159 9 C 0.047 3.953 10 H 0.054 0.946 11 C 0.050 3.950 12 H 0.077 0.923 13 C -0.169 4.169 14 C 0.065 3.935 15 N -0.340 5.340 16 C -0.367 4.367 17 H 0.097 0.903 18 C -0.255 4.255 19 N -0.599 5.599 20 Si 0.805 3.195 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.193 1.193 24 C -0.144 4.144 25 C -0.046 4.046 26 N -0.357 5.357 27 C 0.295 3.705 28 O -0.495 6.495 29 C -0.171 4.171 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.056 0.944 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.232 0.768 49 H 0.132 0.868 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.360 -24.004 -3.708 25.108 hybrid contribution 1.232 1.805 0.249 2.200 sum -5.128 -22.199 -3.459 23.045 Atomic orbital electron populations 1.22502 0.88874 1.05883 1.04925 1.20918 0.99961 0.89352 0.97430 1.21441 0.80508 0.88505 0.80143 1.90502 1.33982 1.79848 1.39970 1.47082 1.45001 1.07902 1.31290 1.22641 0.92942 1.01100 0.87059 1.21897 1.03272 0.93904 0.97624 1.21883 0.98475 0.96234 0.99262 1.21037 0.96818 0.83990 0.93449 0.94560 1.20562 0.97142 0.81488 0.95830 0.92287 1.22848 0.99777 0.95390 0.98894 1.20738 0.94838 0.91840 0.86060 1.44738 1.69123 1.00321 1.19797 1.19368 1.31752 0.85503 1.00118 0.90250 1.25603 1.01594 0.99543 0.98789 1.70183 1.49072 1.18335 1.22300 0.85105 0.77122 0.78752 0.78519 1.21626 1.21867 1.19278 1.21815 0.93755 1.01909 0.96882 1.22178 0.94638 1.03723 0.84018 1.45530 1.13497 1.68250 1.08427 1.20654 0.91701 0.75651 0.82502 1.90741 1.69506 1.52313 1.36945 1.22153 0.90665 1.05334 0.98931 0.87783 0.88938 0.91675 0.89124 0.85138 0.87268 0.92201 0.92676 0.93422 0.90322 0.91823 0.97113 0.97226 0.94394 0.88633 0.87395 0.88811 0.89273 0.76795 0.86784 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.02 71.98 0.58 -0.78 16 2 C -0.07 -1.08 0.50 -52.79 -0.03 -1.10 16 3 C 0.50 12.85 5.89 87.66 0.52 13.37 16 4 O -0.56 -18.44 12.16 -3.04 -0.04 -18.47 16 5 N -0.58 -15.68 2.79 -801.96 -2.24 -17.92 16 6 C 0.08 1.53 3.95 86.54 0.34 1.88 16 7 C -0.13 -2.87 6.10 30.59 0.19 -2.68 16 8 C -0.12 -3.99 5.31 30.55 0.16 -3.83 16 9 C 0.15 6.41 3.27 44.74 0.15 6.56 16 10 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 11 C 0.16 5.79 2.78 45.95 0.13 5.92 16 12 H 0.06 2.57 7.04 -2.39 -0.02 2.56 16 13 C -0.13 -5.05 6.46 31.49 0.20 -4.85 16 14 C 0.19 9.71 5.39 86.66 0.47 10.18 16 15 N -0.62 -32.00 2.93 -672.41 -1.97 -33.97 16 16 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 19 N -0.95 -57.94 10.29 21.65 0.22 -57.72 16 20 Si 0.98 46.55 29.55 68.60 2.03 48.57 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.11 -1.30 4.76 30.68 0.15 -1.15 16 25 C 0.08 1.32 6.48 86.49 0.56 1.88 16 26 N -0.71 -14.79 5.44 -467.32 -2.54 -17.34 16 27 C 0.51 12.17 7.38 87.71 0.65 12.82 16 28 O -0.61 -20.23 17.78 -3.02 -0.05 -20.28 16 29 C -0.13 -1.98 4.34 29.70 0.13 -1.86 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.70 3.74 -2.39 -0.01 0.69 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 1.38 7.26 -2.38 -0.02 1.37 16 34 H 0.13 1.59 2.67 -2.39 -0.01 1.58 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.94 8.02 -2.39 -0.02 1.92 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.01 0.60 7.60 -2.39 -0.02 0.58 16 42 H 0.01 0.55 7.24 -2.38 -0.02 0.54 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.11 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.09 2.19 5.03 -11.55 -0.06 2.14 16 48 H 0.40 8.06 8.80 -92.71 -0.82 7.24 16 49 H 0.11 1.79 5.31 -2.39 -0.01 1.78 16 50 H 0.15 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -80.20 365.17 1.02 -79.18 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.10 Total: 17.43 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 5.51 Total: 20.52 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.53 Total: -126.95 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.09 Total: -38.76 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.20 1.02 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049549790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.299 kcal (2) G-P(sol) polarization free energy of solvation -80.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds