Wall clock time and date at job start Tue Mar 31 2020 19:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.66665 * 2 1 4 4 O 1.21289 * 119.99636 * 112.67649 * 3 2 1 5 5 N 1.34776 * 120.00220 * 292.67749 * 3 2 1 6 6 C 1.47846 * 122.22837 * 4.75364 * 5 3 2 7 7 C 1.53143 * 110.82302 * 127.48830 * 6 5 3 8 8 C 1.53871 * 111.46958 * 48.77500 * 7 6 5 9 9 C 1.51086 * 107.34302 * 302.93649 * 8 7 6 10 10 H 1.09007 * 108.73857 * 308.51689 * 9 8 7 11 11 C 1.45724 * 122.22717 * 185.03804 * 5 3 2 12 12 H 1.09002 * 111.06031 * 119.46405 * 11 5 3 13 13 C 1.53425 * 116.38158 * 350.09818 * 11 5 3 14 14 C 1.55477 * 101.66968 * 207.25702 * 13 11 5 15 15 N 1.45024 * 119.18536 * 183.87614 * 9 8 7 16 16 C 1.36940 * 126.56112 * 28.76616 * 15 9 8 17 17 H 1.08002 * 120.00147 * 354.84210 * 16 15 9 18 18 C 1.38807 * 119.99917 * 174.84206 * 16 15 9 19 19 N 1.31614 * 120.00167 * 5.05737 * 18 16 15 20 20 Si 1.86800 * 120.00037 * 185.05290 * 18 16 15 21 21 H 1.48497 * 109.47070 * 94.99929 * 20 18 16 22 22 H 1.48496 * 109.47383 * 215.00101 * 20 18 16 23 23 H 1.48506 * 109.47212 * 334.99905 * 20 18 16 24 24 C 1.53347 * 109.67819 * 239.50742 * 2 1 3 25 25 C 1.52915 * 108.81228 * 172.61733 * 24 2 1 26 26 N 1.46117 * 110.28806 * 50.68967 * 25 24 2 27 27 C 1.33349 * 124.17862 * 341.03299 * 26 25 24 28 28 O 1.21285 * 118.24645 * 182.15535 * 27 26 25 29 29 C 1.50172 * 123.50842 * 2.18134 * 27 26 25 30 30 H 1.09007 * 109.46671 * 185.27358 * 1 2 3 31 31 H 1.08994 * 109.47304 * 305.26918 * 1 2 3 32 32 H 1.09000 * 109.47120 * 65.27759 * 1 2 3 33 33 H 1.09003 * 109.16182 * 247.94442 * 6 5 3 34 34 H 1.09001 * 109.16219 * 7.12858 * 6 5 3 35 35 H 1.09001 * 109.20726 * 288.19310 * 7 6 5 36 36 H 1.08994 * 108.92755 * 169.17864 * 7 6 5 37 37 H 1.08992 * 109.88299 * 183.47328 * 8 7 6 38 38 H 1.08996 * 109.93948 * 62.42474 * 8 7 6 39 39 H 1.09000 * 110.99085 * 325.35483 * 13 11 5 40 40 H 1.08998 * 110.99175 * 89.16343 * 13 11 5 41 41 H 1.08997 * 109.96575 * 263.21958 * 14 13 11 42 42 H 1.08997 * 109.98847 * 141.99307 * 14 13 11 43 43 H 0.97005 * 120.00003 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.59704 * 292.45604 * 24 2 1 45 45 H 1.08998 * 109.60137 * 52.76918 * 24 2 1 46 46 H 1.08997 * 109.30091 * 171.14466 * 25 24 2 47 47 H 1.09005 * 109.29660 * 290.51765 * 25 24 2 48 48 H 0.97006 * 117.87042 * 160.98862 * 26 25 24 49 49 H 1.09002 * 109.39659 * 222.28544 * 29 27 26 50 50 H 1.09001 * 109.40563 * 102.54603 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.6226 1.8539 0.9692 5 7 1.8403 2.2052 -1.0769 6 6 1.0455 1.7617 -2.2420 7 6 -0.0414 2.7859 -2.5813 8 6 0.5309 4.2126 -2.6495 9 6 1.1824 4.5007 -1.3172 10 1 0.4705 4.2750 -0.5231 11 6 2.4016 3.5465 -1.1731 12 1 3.0743 3.6294 -2.0267 13 6 3.0321 4.1149 0.1049 14 6 2.8516 5.6443 -0.1086 15 7 1.7353 5.8185 -1.0706 16 6 1.3092 6.9980 -1.6207 17 1 0.5376 6.9937 -2.3764 18 6 1.8690 8.1989 -1.2072 19 7 2.8768 8.1983 -0.3607 20 14 1.1921 9.8161 -1.8522 21 1 0.1985 10.3559 -0.8896 22 1 2.3029 10.7882 -2.0145 23 1 0.5367 9.5898 -3.1654 24 6 2.0464 -0.7327 -1.2442 25 6 3.5641 -0.5627 -1.3222 26 7 4.1799 -0.9182 -0.0457 27 6 3.5219 -0.9782 1.1126 28 8 4.1487 -1.2466 2.1156 29 6 2.0461 -0.7317 1.2414 30 1 -0.3633 -1.0234 0.0945 31 1 -0.3633 0.5934 0.8390 32 1 -0.3633 0.4298 -0.9335 33 1 1.7063 1.6394 -3.1003 34 1 0.5777 0.8043 -2.0125 35 1 -0.8187 2.7501 -1.8180 36 1 -0.4785 2.5309 -3.5467 37 1 -0.2728 4.9260 -2.8312 38 1 1.2717 4.2783 -3.4463 39 1 2.4923 3.7779 0.9899 40 1 4.0879 3.8518 0.1699 41 1 3.7660 6.0734 -0.5181 42 1 2.6059 6.1262 0.8376 43 1 3.2682 9.0376 -0.0720 44 1 1.8002 -1.7921 -1.1731 45 1 1.5845 -0.3091 -2.1360 46 1 3.9587 -1.2061 -2.1085 47 1 3.7986 0.4752 -1.5585 48 1 5.1278 -1.1242 -0.0413 49 1 1.8566 -0.1230 2.1255 50 1 1.5271 -1.6850 1.3417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049549791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:21 Heat of formation + Delta-G solvation = -20.019286 kcal Electronic energy + Delta-G solvation = -32029.508358 eV Core-core repulsion = 28058.019617 eV Total energy + Delta-G solvation = -3971.488741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.53881 -39.69678 -37.98274 -36.64867 -35.42614 -34.23495 -32.67906 -32.10445 -29.95278 -28.96365 -28.58327 -27.90461 -25.26358 -24.52628 -24.00431 -22.42864 -21.55717 -21.03386 -20.06395 -19.56244 -18.34946 -17.28198 -16.73893 -16.47808 -15.93556 -15.78916 -15.58849 -15.24059 -14.80482 -14.54347 -14.32798 -14.14612 -13.83915 -13.69934 -13.45877 -13.32195 -13.06040 -12.62274 -12.51882 -12.43419 -12.31728 -12.15277 -11.88689 -11.74340 -11.66448 -11.44167 -11.18743 -10.94428 -10.86944 -10.63813 -10.46782 -10.39115 -10.09934 -10.00828 -9.86344 -9.82154 -9.61019 -9.21248 -8.94042 -8.56398 -8.26770 -6.82118 -5.71065 -3.04906 2.64757 2.73088 3.04798 3.17879 3.39718 3.44388 3.46993 4.08629 4.19239 4.27505 4.47754 4.49248 4.61356 4.70877 4.94597 4.99388 5.06373 5.13811 5.17403 5.29557 5.30859 5.35063 5.38272 5.39579 5.45266 5.56406 5.58277 5.66000 5.73123 5.77583 5.84088 5.87257 5.95405 6.06177 6.22655 6.25405 6.36167 6.53469 6.65597 6.69745 6.76233 6.88637 7.17819 7.22591 7.58422 7.62854 7.68995 7.83878 8.16899 8.24773 8.36609 9.18826 9.83100 10.51639 11.41386 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.003586 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.243913 B = 7805.496452 C = 8538.728980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C 0.524 3.476 4 O -0.521 6.521 5 N -0.595 5.595 6 C 0.090 3.910 7 C -0.130 4.130 8 C -0.116 4.116 9 C 0.160 3.840 10 H 0.017 0.983 11 C 0.117 3.883 12 H 0.078 0.922 13 C -0.132 4.132 14 C 0.173 3.827 15 N -0.593 5.593 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.140 4.140 25 C 0.106 3.894 26 N -0.721 5.721 27 C 0.532 3.468 28 O -0.558 6.558 29 C -0.112 4.112 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.398 0.602 49 H 0.112 0.888 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -21.564 -6.838 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C 0.311 3.689 4 O -0.397 6.397 5 N -0.328 5.328 6 C -0.032 4.032 7 C -0.169 4.169 8 C -0.154 4.154 9 C 0.050 3.950 10 H 0.035 0.965 11 C 0.013 3.987 12 H 0.096 0.904 13 C -0.170 4.170 14 C 0.049 3.951 15 N -0.317 5.317 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.177 4.177 25 C -0.018 4.018 26 N -0.373 5.373 27 C 0.319 3.681 28 O -0.436 6.436 29 C -0.152 4.152 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.233 0.767 49 H 0.131 0.869 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.446 -21.158 -5.750 22.371 hybrid contribution 0.017 0.997 -0.586 1.156 sum -4.429 -20.161 -6.336 21.592 Atomic orbital electron populations 1.22073 0.91527 1.03239 1.03815 1.20963 0.98023 0.93466 0.96512 1.20161 0.79684 0.86550 0.82473 1.90747 1.41814 1.73950 1.33174 1.47904 1.51328 1.16130 1.17433 1.22397 0.93866 0.98492 0.88462 1.21992 0.97673 0.95602 1.01617 1.21425 1.00589 0.94543 0.98884 1.20749 0.92967 0.86832 0.94444 0.96527 1.22415 0.97071 0.79625 0.99631 0.90396 1.23006 0.99935 0.97453 0.96640 1.21721 0.91356 0.88610 0.93451 1.44090 1.36231 1.00532 1.50892 1.18982 1.17018 0.82567 1.17099 0.90379 1.24807 0.98384 0.97618 0.99416 1.69958 1.25037 1.25122 1.36352 0.86151 0.77962 0.83835 0.78107 1.21661 1.21778 1.20674 1.22346 0.95157 1.01890 0.98326 1.21461 0.93405 1.01476 0.85486 1.45458 1.13345 1.70803 1.07692 1.19953 0.90341 0.75277 0.82489 1.90747 1.68281 1.49372 1.35216 1.21567 0.91946 1.02237 0.99426 0.91093 0.91274 0.90575 0.91543 0.88510 0.91721 0.90945 0.91481 0.91857 0.89516 0.92427 0.93082 0.94035 0.93714 0.89756 0.88033 0.90069 0.91306 0.76664 0.86937 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.25 37.16 0.31 -0.79 16 2 C -0.09 -0.82 0.50 -155.44 -0.08 -0.90 16 3 C 0.52 7.38 4.85 -10.98 -0.05 7.33 16 4 O -0.52 -9.70 12.11 5.55 0.07 -9.64 16 5 N -0.60 -8.09 2.72 -163.75 -0.45 -8.53 16 6 C 0.09 0.85 4.30 -3.23 -0.01 0.84 16 7 C -0.13 -1.41 5.94 -26.20 -0.16 -1.56 16 8 C -0.12 -1.84 5.43 -27.24 -0.15 -1.98 16 9 C 0.16 3.18 2.57 -68.36 -0.18 3.01 16 10 H 0.02 0.38 8.06 -51.92 -0.42 -0.04 16 11 C 0.12 2.09 3.32 -66.81 -0.22 1.86 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 13 C -0.13 -2.77 5.10 -25.19 -0.13 -2.90 16 14 C 0.17 4.36 5.46 -1.69 -0.01 4.35 16 15 N -0.59 -14.94 3.35 -163.28 -0.55 -15.48 16 16 C -0.23 -6.23 9.95 -15.06 -0.15 -6.38 16 17 H 0.08 2.03 7.28 -52.49 -0.38 1.65 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 19 N -0.92 -27.19 10.49 55.49 0.58 -26.61 16 20 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.14 -0.92 4.48 -26.60 -0.12 -1.04 16 25 C 0.11 0.84 6.63 -4.29 -0.03 0.81 16 26 N -0.72 -7.75 5.45 -61.15 -0.33 -8.08 16 27 C 0.53 7.30 6.99 -11.88 -0.08 7.21 16 28 O -0.56 -10.04 17.78 5.55 0.10 -9.94 16 29 C -0.11 -1.24 4.47 -28.10 -0.13 -1.36 16 30 H 0.07 0.36 8.10 -51.92 -0.42 -0.06 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.49 5.19 -51.93 -0.27 0.22 16 33 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.10 0.64 2.47 -51.93 -0.13 0.51 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 38 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 39 H 0.09 1.94 6.05 -51.93 -0.31 1.63 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.40 7.35 -51.93 -0.38 1.02 16 42 H 0.04 1.16 7.69 -51.93 -0.40 0.76 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.10 0.50 4.71 -51.93 -0.24 0.25 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.68 7.23 -51.93 -0.38 0.30 16 48 H 0.40 3.96 8.80 -40.82 -0.36 3.60 16 49 H 0.11 1.48 7.63 -51.93 -0.40 1.08 16 50 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.74 364.38 -9.24 -44.97 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.84 Total: 2.63 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -1.28 Total: 8.24 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.74 Total: -58.71 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.17 Total: -19.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.74 -9.24 -44.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049549791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.953 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds