Wall clock time and date at job start Tue Mar 31 2020 19:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.60085 * 2 1 4 4 O 1.21281 * 119.99622 * 127.53378 * 3 2 1 5 5 N 1.34770 * 120.00085 * 307.52737 * 3 2 1 6 6 C 1.46803 * 119.57798 * 355.23887 * 5 3 2 7 7 C 1.53465 * 107.59247 * 232.05617 * 6 5 3 8 8 C 1.52733 * 108.44225 * 301.91430 * 7 6 5 9 9 C 1.53014 * 110.80424 * 63.76322 * 8 7 6 10 10 H 1.09003 * 111.38067 * 69.73931 * 9 8 7 11 11 C 1.45117 * 119.57867 * 174.96153 * 5 3 2 12 12 H 1.09002 * 109.97139 * 11.93798 * 11 5 3 13 13 C 1.53904 * 111.90151 * 248.66406 * 11 5 3 14 14 C 1.54568 * 102.55337 * 203.54349 * 13 11 5 15 15 N 1.47122 * 107.25561 * 21.70985 * 14 13 11 16 16 C 1.36932 * 125.76823 * 182.59622 * 15 14 13 17 17 H 1.08001 * 120.00132 * 179.97438 * 16 15 14 18 18 C 1.38806 * 119.99986 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00382 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47219 * 89.99955 * 20 18 16 22 22 H 1.48505 * 109.47138 * 209.99885 * 20 18 16 23 23 H 1.48502 * 109.47098 * 329.99626 * 20 18 16 24 24 C 1.53345 * 109.60457 * 239.67877 * 2 1 3 25 25 C 1.53387 * 108.25281 * 172.72554 * 24 2 1 26 26 C 1.50176 * 109.99022 * 48.76451 * 25 24 2 27 27 O 1.21285 * 118.24434 * 162.48121 * 26 25 24 28 28 N 1.33347 * 123.50694 * 342.45683 * 26 25 24 29 29 C 1.45757 * 124.10799 * 2.19903 * 28 26 25 30 30 H 1.09001 * 109.47632 * 52.57911 * 1 2 3 31 31 H 1.09000 * 109.47568 * 172.58088 * 1 2 3 32 32 H 1.08998 * 109.47330 * 292.57812 * 1 2 3 33 33 H 1.09004 * 109.83567 * 351.57953 * 6 5 3 34 34 H 1.09004 * 109.83545 * 112.53287 * 6 5 3 35 35 H 1.09000 * 109.64257 * 61.59981 * 7 6 5 36 36 H 1.09003 * 109.64324 * 182.22287 * 7 6 5 37 37 H 1.08995 * 109.20910 * 184.10712 * 8 7 6 38 38 H 1.09004 * 109.20929 * 303.42566 * 8 7 6 39 39 H 1.09005 * 110.72250 * 85.28805 * 13 11 5 40 40 H 1.09000 * 110.97025 * 321.90777 * 13 11 5 41 41 H 1.09008 * 109.88199 * 262.30093 * 14 13 11 42 42 H 1.08992 * 110.01802 * 141.20412 * 14 13 11 43 43 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.66843 * 292.28005 * 24 2 1 45 45 H 1.08993 * 109.67480 * 52.81228 * 24 2 1 46 46 H 1.09006 * 109.32105 * 288.62747 * 25 24 2 47 47 H 1.09001 * 109.31489 * 168.90418 * 25 24 2 48 48 H 0.96999 * 117.94950 * 182.22700 * 28 26 25 49 49 H 1.09005 * 109.30251 * 220.63681 * 29 28 26 50 50 H 1.09001 * 109.29741 * 101.25920 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0355 1.4197 0.0000 4 8 2.8417 1.7763 0.8329 5 7 1.5918 2.2930 -0.9256 6 6 0.6977 1.8264 -1.9924 7 6 1.2999 2.2740 -3.3311 8 6 1.4429 3.7945 -3.3123 9 6 2.4315 4.2340 -2.2302 10 1 3.4528 3.9528 -2.4871 11 6 1.9991 3.6839 -0.8515 12 1 2.8112 3.7963 -0.1332 13 6 0.8235 4.6078 -0.4868 14 6 1.2824 5.9729 -1.0479 15 7 2.2924 5.7022 -2.0829 16 6 2.9865 6.6470 -2.7904 17 1 3.7103 6.3426 -3.5319 18 6 2.7606 7.9960 -2.5539 19 7 1.8788 8.3671 -1.6499 20 14 3.7080 9.2848 -3.5187 21 1 2.9576 9.6302 -4.7527 22 1 3.8769 10.5021 -2.6850 23 1 5.0428 8.7468 -3.8851 24 6 2.0444 -0.7293 -1.2470 25 6 3.5668 -0.5538 -1.3122 26 6 4.1788 -0.8801 0.0198 27 8 5.3693 -1.1074 0.0642 28 7 3.4834 -0.9327 1.1563 29 6 2.0430 -0.7273 1.2435 30 1 -0.3634 0.6245 -0.8161 31 1 -0.3634 -1.0190 -0.1327 32 1 -0.3634 0.3946 0.9489 33 1 0.6248 0.7392 -1.9647 34 1 -0.2910 2.2675 -1.8656 35 1 2.2798 1.8154 -3.4637 36 1 0.6402 1.9780 -4.1468 37 1 1.8013 4.1330 -4.2844 38 1 0.4700 4.2438 -3.1132 39 1 0.6930 4.6574 0.5942 40 1 -0.0958 4.2792 -0.9716 41 1 1.7205 6.5732 -0.2504 42 1 0.4350 6.5003 -1.4857 43 1 1.7208 9.3097 -1.4849 44 1 1.8009 -1.7896 -1.1785 45 1 1.5832 -0.3031 -2.1378 46 1 3.8000 0.4782 -1.5748 47 1 3.9745 -1.2214 -2.0713 48 1 3.9664 -1.1191 1.9766 49 1 1.8168 -0.1319 2.1281 50 1 1.5457 -1.6937 1.3265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049659371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:21 Heat of formation + Delta-G solvation = -21.735207 kcal Electronic energy + Delta-G solvation = -31957.264040 eV Core-core repulsion = 27985.700891 eV Total energy + Delta-G solvation = -3971.563149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.63446 -39.71755 -38.21323 -36.54468 -35.52712 -33.63471 -32.46959 -32.11901 -31.53928 -29.05337 -28.35697 -26.56108 -25.29879 -24.71103 -24.26083 -22.74997 -22.09459 -21.02134 -20.06625 -18.89609 -18.14735 -17.32493 -16.92933 -16.75706 -16.11415 -15.93703 -15.67316 -15.00929 -14.83035 -14.55500 -14.32396 -14.11497 -13.90575 -13.60100 -13.52257 -13.18584 -13.13919 -12.81198 -12.60144 -12.51046 -12.28610 -12.08424 -11.94686 -11.65621 -11.52846 -11.34690 -11.14357 -11.03065 -10.86261 -10.78115 -10.64386 -10.43312 -10.11099 -10.08555 -9.80131 -9.66529 -9.64566 -9.45824 -9.11292 -8.64167 -8.32933 -6.88206 -5.72957 -3.07074 2.61963 2.65502 3.03171 3.23394 3.39433 3.45131 3.46774 4.03652 4.15341 4.32667 4.39661 4.47718 4.63677 4.80709 4.95883 5.02135 5.04618 5.15154 5.20496 5.24703 5.26874 5.35494 5.38781 5.43596 5.50760 5.54250 5.57769 5.60140 5.67109 5.71868 5.81146 5.81714 5.93259 6.06581 6.16541 6.26875 6.30928 6.45295 6.54816 6.68967 6.70212 6.93331 7.01920 7.26504 7.51650 7.54012 7.59034 7.80189 8.18235 8.20682 8.26888 9.18769 9.78499 10.43926 11.38284 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.003503 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.333125 B = 7991.724169 C = 8306.979149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C 0.517 3.483 4 O -0.532 6.532 5 N -0.587 5.587 6 C 0.084 3.916 7 C -0.136 4.136 8 C -0.130 4.130 9 C 0.156 3.844 10 H 0.059 0.941 11 C 0.131 3.869 12 H 0.101 0.899 13 C -0.150 4.150 14 C 0.180 3.820 15 N -0.598 5.598 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.121 4.121 25 C -0.141 4.141 26 C 0.527 3.473 27 O -0.563 6.563 28 N -0.707 5.707 29 C 0.138 3.862 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.400 0.600 49 H 0.083 0.917 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 -21.252 1.411 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.103 4.103 3 C 0.304 3.696 4 O -0.408 6.408 5 N -0.318 5.318 6 C -0.038 4.038 7 C -0.174 4.174 8 C -0.170 4.170 9 C 0.047 3.953 10 H 0.077 0.923 11 C 0.027 3.973 12 H 0.119 0.881 13 C -0.189 4.189 14 C 0.055 3.945 15 N -0.322 5.322 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.158 4.158 25 C -0.180 4.180 26 C 0.314 3.686 27 O -0.442 6.442 28 N -0.358 5.358 29 C 0.012 3.988 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.235 0.765 49 H 0.101 0.899 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.348 -20.817 1.667 22.139 hybrid contribution 0.389 0.928 -0.197 1.025 sum -6.960 -19.889 1.470 21.123 Atomic orbital electron populations 1.22282 0.91233 1.03771 1.04623 1.21170 0.98205 0.93529 0.97354 1.20285 0.81399 0.86609 0.81328 1.90736 1.32963 1.78730 1.38362 1.47533 1.47844 1.09141 1.27307 1.22538 0.93641 1.00339 0.87318 1.21979 1.00990 0.98550 0.95925 1.22116 1.01405 0.92557 1.00892 1.21439 0.96425 0.86090 0.91338 0.92310 1.21752 0.98042 0.78070 0.99471 0.88134 1.23000 0.97211 0.98516 1.00206 1.21172 0.92111 0.89734 0.91436 1.44703 1.45449 0.98498 1.43571 1.19031 1.16183 0.85647 1.14659 0.90455 1.24783 0.99379 0.96903 0.99171 1.69952 1.36517 1.15082 1.35322 0.86133 0.79341 0.81373 0.78995 1.21641 1.21680 1.20677 1.22122 0.95041 1.01405 0.97273 1.21735 0.95663 1.05218 0.95415 1.19960 0.86720 0.75655 0.86236 1.90748 1.15735 1.50478 1.87208 1.45189 1.08781 1.71908 1.09940 1.21177 0.80625 0.99396 0.97556 0.89410 0.90971 0.91387 0.87962 0.91104 0.91761 0.91225 0.92148 0.91858 0.92188 0.92276 0.93106 0.94020 0.93744 0.89762 0.88630 0.88032 0.87728 0.76471 0.89859 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.06 37.15 0.30 -0.68 16 2 C -0.10 -0.86 0.50 -155.52 -0.08 -0.94 16 3 C 0.52 6.95 4.80 -10.99 -0.05 6.90 16 4 O -0.53 -9.44 14.49 5.56 0.08 -9.36 16 5 N -0.59 -7.92 2.73 -165.08 -0.45 -8.37 16 6 C 0.08 0.83 3.76 -3.64 -0.01 0.82 16 7 C -0.14 -1.53 6.11 -26.63 -0.16 -1.69 16 8 C -0.13 -2.11 5.10 -26.86 -0.14 -2.25 16 9 C 0.16 3.06 3.61 -66.14 -0.24 2.82 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C 0.13 2.33 3.11 -67.36 -0.21 2.13 16 12 H 0.10 2.11 6.93 -51.93 -0.36 1.75 16 13 C -0.15 -2.75 6.06 -25.44 -0.15 -2.90 16 14 C 0.18 4.27 5.19 -2.88 -0.01 4.25 16 15 N -0.60 -14.66 2.91 -161.95 -0.47 -15.13 16 16 C -0.23 -6.19 10.29 -15.06 -0.16 -6.34 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.74 10.33 55.49 0.57 -26.16 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.12 -0.89 4.69 -26.35 -0.12 -1.01 16 25 C -0.14 -1.51 5.51 -27.94 -0.15 -1.66 16 26 C 0.53 7.27 7.19 -11.87 -0.09 7.18 16 27 O -0.56 -10.15 17.78 5.55 0.10 -10.05 16 28 N -0.71 -7.91 4.88 -61.39 -0.30 -8.21 16 29 C 0.14 1.16 5.41 -4.48 -0.02 1.13 16 30 H 0.09 0.53 4.17 -51.93 -0.22 0.31 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.71 2.42 -51.93 -0.13 0.59 16 34 H 0.07 0.69 7.25 -51.93 -0.38 0.31 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.11 7.13 -51.93 -0.37 0.74 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.98 6.83 -51.93 -0.35 0.62 16 41 H 0.05 1.36 7.30 -51.92 -0.38 0.98 16 42 H 0.04 1.08 7.59 -51.93 -0.39 0.69 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 0.45 8.13 -51.93 -0.42 0.02 16 45 H 0.10 0.58 5.20 -51.93 -0.27 0.31 16 46 H 0.10 1.30 7.43 -51.93 -0.39 0.91 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.40 4.23 8.80 -40.82 -0.36 3.87 16 49 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 50 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -34.81 365.37 -9.16 -43.97 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.77 Total: 3.31 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.40 Total: 7.50 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.65 Total: -57.87 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.18 Total: -19.41 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.81 -9.16 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049659371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.234 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds