Wall clock time and date at job start Tue Mar 31 2020 19:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.60085 * 2 1 4 4 O 1.21281 * 119.99622 * 127.53378 * 3 2 1 5 5 N 1.34770 * 120.00085 * 307.52737 * 3 2 1 6 6 C 1.46803 * 119.57798 * 355.23887 * 5 3 2 7 7 C 1.53465 * 107.59247 * 232.05617 * 6 5 3 8 8 C 1.52733 * 108.44225 * 301.91430 * 7 6 5 9 9 C 1.53014 * 110.80424 * 63.76322 * 8 7 6 10 10 H 1.09003 * 111.38067 * 69.73931 * 9 8 7 11 11 C 1.45117 * 119.57867 * 174.96153 * 5 3 2 12 12 H 1.09002 * 109.97139 * 11.93798 * 11 5 3 13 13 C 1.53904 * 111.90151 * 248.66406 * 11 5 3 14 14 C 1.54568 * 102.55337 * 203.54349 * 13 11 5 15 15 N 1.47122 * 107.25561 * 21.70985 * 14 13 11 16 16 C 1.36932 * 125.76823 * 182.59622 * 15 14 13 17 17 H 1.08001 * 120.00132 * 179.97438 * 16 15 14 18 18 C 1.38806 * 119.99986 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00382 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47219 * 89.99955 * 20 18 16 22 22 H 1.48505 * 109.47138 * 209.99885 * 20 18 16 23 23 H 1.48502 * 109.47098 * 329.99626 * 20 18 16 24 24 C 1.53345 * 109.60457 * 239.67877 * 2 1 3 25 25 C 1.53387 * 108.25281 * 172.72554 * 24 2 1 26 26 C 1.50176 * 109.99022 * 48.76451 * 25 24 2 27 27 O 1.21285 * 118.24434 * 162.48121 * 26 25 24 28 28 N 1.33347 * 123.50694 * 342.45683 * 26 25 24 29 29 C 1.45757 * 124.10799 * 2.19903 * 28 26 25 30 30 H 1.09001 * 109.47632 * 52.57911 * 1 2 3 31 31 H 1.09000 * 109.47568 * 172.58088 * 1 2 3 32 32 H 1.08998 * 109.47330 * 292.57812 * 1 2 3 33 33 H 1.09004 * 109.83567 * 351.57953 * 6 5 3 34 34 H 1.09004 * 109.83545 * 112.53287 * 6 5 3 35 35 H 1.09000 * 109.64257 * 61.59981 * 7 6 5 36 36 H 1.09003 * 109.64324 * 182.22287 * 7 6 5 37 37 H 1.08995 * 109.20910 * 184.10712 * 8 7 6 38 38 H 1.09004 * 109.20929 * 303.42566 * 8 7 6 39 39 H 1.09005 * 110.72250 * 85.28805 * 13 11 5 40 40 H 1.09000 * 110.97025 * 321.90777 * 13 11 5 41 41 H 1.09008 * 109.88199 * 262.30093 * 14 13 11 42 42 H 1.08992 * 110.01802 * 141.20412 * 14 13 11 43 43 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.66843 * 292.28005 * 24 2 1 45 45 H 1.08993 * 109.67480 * 52.81228 * 24 2 1 46 46 H 1.09006 * 109.32105 * 288.62747 * 25 24 2 47 47 H 1.09001 * 109.31489 * 168.90418 * 25 24 2 48 48 H 0.96999 * 117.94950 * 182.22700 * 28 26 25 49 49 H 1.09005 * 109.30251 * 220.63681 * 29 28 26 50 50 H 1.09001 * 109.29741 * 101.25920 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0355 1.4197 0.0000 4 8 2.8417 1.7763 0.8329 5 7 1.5918 2.2930 -0.9256 6 6 0.6977 1.8264 -1.9924 7 6 1.2999 2.2740 -3.3311 8 6 1.4429 3.7945 -3.3123 9 6 2.4315 4.2340 -2.2302 10 1 3.4528 3.9528 -2.4871 11 6 1.9991 3.6839 -0.8515 12 1 2.8112 3.7963 -0.1332 13 6 0.8235 4.6078 -0.4868 14 6 1.2824 5.9729 -1.0479 15 7 2.2924 5.7022 -2.0829 16 6 2.9865 6.6470 -2.7904 17 1 3.7103 6.3426 -3.5319 18 6 2.7606 7.9960 -2.5539 19 7 1.8788 8.3671 -1.6499 20 14 3.7080 9.2848 -3.5187 21 1 2.9576 9.6302 -4.7527 22 1 3.8769 10.5021 -2.6850 23 1 5.0428 8.7468 -3.8851 24 6 2.0444 -0.7293 -1.2470 25 6 3.5668 -0.5538 -1.3122 26 6 4.1788 -0.8801 0.0198 27 8 5.3693 -1.1074 0.0642 28 7 3.4834 -0.9327 1.1563 29 6 2.0430 -0.7273 1.2435 30 1 -0.3634 0.6245 -0.8161 31 1 -0.3634 -1.0190 -0.1327 32 1 -0.3634 0.3946 0.9489 33 1 0.6248 0.7392 -1.9647 34 1 -0.2910 2.2675 -1.8656 35 1 2.2798 1.8154 -3.4637 36 1 0.6402 1.9780 -4.1468 37 1 1.8013 4.1330 -4.2844 38 1 0.4700 4.2438 -3.1132 39 1 0.6930 4.6574 0.5942 40 1 -0.0958 4.2792 -0.9716 41 1 1.7205 6.5732 -0.2504 42 1 0.4350 6.5003 -1.4857 43 1 1.7208 9.3097 -1.4849 44 1 1.8009 -1.7896 -1.1785 45 1 1.5832 -0.3031 -2.1378 46 1 3.8000 0.4782 -1.5748 47 1 3.9745 -1.2214 -2.0713 48 1 3.9664 -1.1191 1.9766 49 1 1.8168 -0.1319 2.1281 50 1 1.5457 -1.6937 1.3265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049659371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:20 Heat of formation + Delta-G solvation = -47.403978 kcal Electronic energy + Delta-G solvation = -31958.377121 eV Core-core repulsion = 27985.700891 eV Total energy + Delta-G solvation = -3972.676230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.59453 -40.90278 -39.53765 -37.55222 -36.89506 -34.78589 -33.86829 -33.60741 -32.35418 -30.82564 -29.80829 -27.26006 -26.73682 -26.00475 -25.33302 -23.75829 -23.30303 -22.10131 -21.84696 -20.06767 -19.31117 -18.81605 -18.24101 -17.76369 -17.12712 -16.85517 -16.75072 -16.68862 -16.20616 -15.90097 -15.62979 -15.17745 -14.99850 -14.81737 -14.54963 -14.25423 -14.20971 -14.08648 -13.74042 -13.47756 -13.41951 -13.27577 -13.16414 -12.96871 -12.79843 -12.61757 -12.51440 -12.30855 -12.29017 -12.09487 -12.02853 -11.82272 -11.75598 -11.53787 -11.37684 -11.17611 -10.80013 -10.73000 -10.49575 -10.01919 -9.56786 -8.90219 -7.86563 -5.21955 1.42863 1.44958 1.53258 1.60267 1.63583 1.95073 2.39528 2.47838 3.26148 3.31923 3.46630 3.53354 3.63127 3.68799 3.84108 3.89431 3.99292 4.05712 4.10118 4.15379 4.35191 4.37790 4.39450 4.53376 4.57744 4.63585 4.65930 4.70972 4.74856 4.77342 4.85080 4.88682 4.95028 5.01257 5.05749 5.09591 5.17359 5.23389 5.38009 5.40023 5.43246 5.56165 5.63655 5.66221 5.73076 5.81297 6.16671 6.36049 6.48870 7.07390 7.19992 7.20691 7.73739 8.38776 9.23312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.003503 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.333125 B = 7991.724169 C = 8306.979149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 C 0.510 3.490 4 O -0.585 6.585 5 N -0.585 5.585 6 C 0.080 3.920 7 C -0.127 4.127 8 C -0.118 4.118 9 C 0.149 3.851 10 H 0.040 0.960 11 C 0.149 3.851 12 H 0.058 0.942 13 C -0.129 4.129 14 C 0.191 3.809 15 N -0.619 5.619 16 C -0.237 4.237 17 H 0.078 0.922 18 C -0.063 4.063 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.273 1.273 24 C -0.113 4.113 25 C -0.140 4.140 26 C 0.515 3.485 27 O -0.621 6.621 28 N -0.703 5.703 29 C 0.130 3.870 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.005 0.995 42 H 0.013 0.987 43 H 0.246 0.754 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.074 0.926 47 H 0.120 0.880 48 H 0.399 0.601 49 H 0.075 0.925 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -25.067 -0.066 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.095 4.095 3 C 0.300 3.700 4 O -0.465 6.465 5 N -0.316 5.316 6 C -0.040 4.040 7 C -0.166 4.166 8 C -0.158 4.158 9 C 0.042 3.958 10 H 0.058 0.942 11 C 0.043 3.957 12 H 0.077 0.923 13 C -0.168 4.168 14 C 0.065 3.935 15 N -0.344 5.344 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.600 5.600 20 Si 0.804 3.196 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.198 1.198 24 C -0.150 4.150 25 C -0.180 4.180 26 C 0.303 3.697 27 O -0.505 6.505 28 N -0.351 5.351 29 C 0.006 3.994 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.023 0.977 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.138 0.862 48 H 0.234 0.766 49 H 0.094 0.906 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.280 -24.692 0.173 26.747 hybrid contribution 1.345 2.113 0.333 2.526 sum -8.935 -22.579 0.505 24.288 Atomic orbital electron populations 1.22340 0.88073 1.06433 1.04743 1.21266 1.00397 0.89442 0.98353 1.21352 0.80217 0.88484 0.79981 1.90723 1.35285 1.80031 1.40419 1.47548 1.48367 1.06997 1.28654 1.22971 0.93126 1.02983 0.84935 1.21978 1.02427 0.93943 0.98232 1.21887 0.99136 0.96735 0.98071 1.21658 0.96715 0.83604 0.93790 0.94235 1.21118 0.96510 0.81157 0.96955 0.92327 1.22786 0.98321 0.95330 1.00392 1.20859 0.90644 0.92072 0.89885 1.44962 1.45439 1.00523 1.43502 1.19372 1.16065 0.86655 1.14536 0.90407 1.25583 1.00693 0.98848 1.00505 1.70171 1.38083 1.14791 1.36910 0.85129 0.78385 0.78488 0.77640 1.20855 1.22230 1.19829 1.22235 0.91862 1.03759 0.97095 1.21747 0.98610 1.03772 0.93840 1.20605 0.86238 0.74976 0.87859 1.90710 1.18232 1.53347 1.88194 1.45319 1.10251 1.70248 1.09315 1.21536 0.78909 1.01637 0.97301 0.88915 0.87010 0.91770 0.83687 0.89500 0.91489 0.87324 0.93780 0.92775 0.91716 0.89302 0.97664 0.96837 0.94445 0.85833 0.86436 0.90741 0.86184 0.76640 0.90633 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.06 71.98 0.58 -0.31 16 2 C -0.09 -1.18 0.50 -52.84 -0.03 -1.21 16 3 C 0.51 12.88 4.80 87.66 0.42 13.30 16 4 O -0.58 -21.24 14.49 -3.03 -0.04 -21.28 16 5 N -0.59 -14.68 2.73 -794.60 -2.17 -16.84 16 6 C 0.08 1.21 3.76 86.48 0.33 1.53 16 7 C -0.13 -2.36 6.11 30.66 0.19 -2.17 16 8 C -0.12 -3.74 5.10 30.51 0.16 -3.58 16 9 C 0.15 6.04 3.61 45.21 0.16 6.21 16 10 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 11 C 0.15 5.42 3.11 46.10 0.14 5.56 16 12 H 0.06 2.64 6.93 -2.39 -0.02 2.62 16 13 C -0.13 -4.79 6.06 31.43 0.19 -4.60 16 14 C 0.19 9.56 5.19 86.79 0.45 10.01 16 15 N -0.62 -31.93 2.91 -666.30 -1.94 -33.87 16 16 C -0.24 -13.50 10.29 84.03 0.86 -12.64 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 18 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 19 N -0.95 -58.01 10.33 21.65 0.22 -57.79 16 20 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.11 -1.03 4.69 30.84 0.14 -0.88 16 25 C -0.14 -2.70 5.51 29.81 0.16 -2.54 16 26 C 0.51 13.92 7.19 87.71 0.63 14.55 16 27 O -0.62 -23.15 17.78 -3.04 -0.05 -23.21 16 28 N -0.70 -14.82 4.88 -467.31 -2.28 -17.10 16 29 C 0.13 1.72 5.41 86.49 0.47 2.19 16 30 H 0.09 0.46 4.17 -2.39 -0.01 0.45 16 31 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.15 1.01 2.42 -2.39 -0.01 1.00 16 34 H 0.09 1.16 7.25 -2.38 -0.02 1.14 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.81 7.13 -2.39 -0.02 1.79 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.09 2.77 6.83 -2.39 -0.02 2.76 16 41 H 0.01 0.30 7.30 -2.38 -0.02 0.28 16 42 H 0.01 0.74 7.59 -2.39 -0.02 0.72 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.12 0.34 8.13 -2.38 -0.02 0.33 16 45 H 0.12 0.58 5.20 -2.39 -0.01 0.57 16 46 H 0.07 1.87 7.43 -2.38 -0.02 1.85 16 47 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.40 8.35 8.80 -92.71 -0.82 7.53 16 49 H 0.08 1.17 7.94 -2.38 -0.02 1.15 16 50 H 0.12 0.59 8.12 -2.39 -0.02 0.57 16 Total: -1.00 -87.04 365.37 1.24 -85.79 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.15 Total: 13.27 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.33 Total: 22.24 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.17 Total: -125.61 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.10 Total: -44.49 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -87.04 1.24 -85.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049659371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.391 kcal (2) G-P(sol) polarization free energy of solvation -87.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds