Wall clock time and date at job start Tue Mar 31 2020 19:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.70313 * 2 1 4 4 O 1.21279 * 120.00116 * 123.64906 * 3 2 1 5 5 N 1.34779 * 119.99950 * 303.65474 * 3 2 1 6 6 C 1.47163 * 136.00225 * 4.60670 * 5 3 2 7 7 C 1.52649 * 87.96994 * 206.71813 * 6 5 3 8 8 C 1.47162 * 135.99801 * 184.96903 * 5 3 2 9 9 C 1.52554 * 113.89477 * 88.17019 * 7 6 5 10 10 C 1.53356 * 109.12849 * 190.30730 * 9 7 6 11 11 N 1.46889 * 108.75075 * 307.76034 * 10 9 7 12 12 C 1.36937 * 120.46061 * 235.60661 * 11 10 9 13 13 H 1.07994 * 120.00535 * 30.23099 * 12 11 10 14 14 C 1.38810 * 119.99775 * 210.23496 * 12 11 10 15 15 N 1.31624 * 120.00325 * 12.77816 * 14 12 11 16 16 Si 1.86801 * 120.00086 * 192.78083 * 14 12 11 17 17 H 1.48502 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47330 * 120.00016 * 16 14 12 19 19 H 1.48505 * 109.47050 * 240.00208 * 16 14 12 20 20 C 1.46890 * 119.07441 * 55.62094 * 11 10 9 21 21 C 1.52558 * 114.25882 * 220.76068 * 7 6 5 22 22 C 1.53348 * 109.66907 * 239.48820 * 2 1 3 23 23 C 1.52919 * 108.67365 * 172.73395 * 22 2 1 24 24 N 1.45758 * 110.48670 * 50.75479 * 23 22 2 25 25 C 1.33351 * 124.10619 * 340.91877 * 24 23 22 26 26 O 1.21276 * 118.24748 * 182.24596 * 25 24 23 27 27 C 1.50173 * 123.50764 * 2.23086 * 25 24 23 28 28 H 1.08999 * 109.47452 * 187.04085 * 1 2 3 29 29 H 1.09003 * 109.46744 * 307.04158 * 1 2 3 30 30 H 1.09001 * 109.47793 * 67.03961 * 1 2 3 31 31 H 1.09004 * 113.48645 * 321.40608 * 6 5 3 32 32 H 1.08998 * 113.49364 * 91.91649 * 6 5 3 33 33 H 1.08998 * 113.48882 * 268.08577 * 8 5 3 34 34 H 1.08995 * 113.48910 * 38.53201 * 8 5 3 35 35 H 1.08996 * 109.52933 * 310.19549 * 9 7 6 36 36 H 1.08995 * 109.52665 * 70.41682 * 9 7 6 37 37 H 1.08997 * 109.59481 * 187.98258 * 10 9 7 38 38 H 1.09000 * 109.71402 * 67.60515 * 10 9 7 39 39 H 0.96998 * 120.00346 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.59108 * 184.59006 * 20 11 10 41 41 H 1.09000 * 109.71526 * 64.21968 * 20 11 10 42 42 H 1.08991 * 109.52715 * 289.75107 * 21 7 6 43 43 H 1.08999 * 109.52848 * 49.89590 * 21 7 6 44 44 H 1.08996 * 109.60569 * 292.48822 * 22 2 1 45 45 H 1.08996 * 109.60854 * 52.97993 * 22 2 1 46 46 H 1.09001 * 109.30397 * 171.06434 * 23 22 2 47 47 H 1.08997 * 109.30179 * 290.44121 * 23 22 2 48 48 H 0.97004 * 117.94443 * 160.92952 * 24 23 22 49 49 H 1.08997 * 109.40596 * 222.28502 * 27 25 24 50 50 H 1.09005 * 109.40605 * 102.54221 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.7904 1.7935 0.8743 5 7 1.6562 2.2713 -0.9716 6 6 0.7287 2.2284 -2.1133 7 6 1.6018 3.2803 -2.7925 8 6 1.9888 3.6512 -1.3599 9 6 2.7463 2.6961 -3.6147 10 6 3.6950 3.8272 -4.0302 11 7 2.9100 4.8900 -4.6719 12 6 3.2254 5.3210 -5.9329 13 1 3.6713 4.6384 -6.6411 14 6 2.9720 6.6352 -6.3008 15 7 2.6686 7.5288 -5.3831 16 14 3.0614 7.1358 -8.0982 17 1 3.4196 5.9546 -8.9238 18 1 1.7422 7.6619 -8.5319 19 1 4.0944 8.1892 -8.2679 20 6 1.7823 5.4843 -3.9421 21 6 0.8197 4.3653 -3.5263 22 6 2.0461 -0.7331 -1.2440 23 6 3.5641 -0.5638 -1.3176 24 7 4.1794 -0.9199 -0.0451 25 6 3.5210 -0.9794 1.1131 26 8 4.1475 -1.2474 2.1163 27 6 2.0454 -0.7320 1.2415 28 1 -0.3634 -1.0199 0.1260 29 1 -0.3633 0.6191 0.8203 30 1 -0.3635 0.4009 -0.9462 31 1 0.7230 1.2700 -2.6326 32 1 -0.2730 2.5845 -1.8730 33 1 1.3334 4.3984 -0.9124 34 1 3.0452 3.8928 -1.2429 35 1 3.2903 1.9663 -3.0152 36 1 2.3452 2.2117 -4.5049 37 1 4.4348 3.4441 -4.7331 38 1 4.1992 4.2261 -3.1500 39 1 2.4919 8.4472 -5.6402 40 1 1.2623 6.1929 -4.5869 41 1 2.1493 5.9993 -3.0543 42 1 0.3509 3.9396 -4.4134 43 1 0.0519 4.7700 -2.8670 44 1 1.7994 -1.7924 -1.1730 45 1 1.5871 -0.3074 -2.1363 46 1 3.9610 -1.2079 -2.1023 47 1 3.7998 0.4738 -1.5539 48 1 5.1272 -1.1263 -0.0404 49 1 1.8559 -0.1231 2.1255 50 1 1.5258 -1.6850 1.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050564496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:33 Heat of formation + Delta-G solvation = -15.855889 kcal Electronic energy + Delta-G solvation = -31256.874506 eV Core-core repulsion = 27285.566303 eV Total energy + Delta-G solvation = -3971.308202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54027 -40.23136 -38.42512 -36.52651 -35.96745 -34.36422 -32.52047 -30.76553 -29.94910 -29.82707 -28.37220 -27.26876 -26.12407 -24.39837 -24.01855 -22.81425 -22.38264 -20.89298 -20.22312 -18.51895 -18.12645 -17.46340 -16.72404 -16.59926 -16.23104 -15.99053 -15.78148 -15.15509 -14.91902 -14.66944 -14.08834 -13.98907 -13.81673 -13.67316 -13.61460 -13.27188 -13.12720 -12.90137 -12.82065 -12.48454 -12.37146 -12.27142 -12.02407 -11.86291 -11.69177 -11.48018 -11.43603 -11.12309 -11.06072 -10.80700 -10.53018 -10.34883 -10.15527 -9.91584 -9.87139 -9.82214 -9.68725 -9.38033 -9.19622 -8.63577 -8.52338 -6.68966 -5.83669 -3.30630 2.55486 2.61526 2.79120 3.17526 3.32503 3.40834 3.42265 4.03334 4.12560 4.24197 4.43294 4.45339 4.46742 4.55724 4.87568 4.99276 5.01682 5.14456 5.15961 5.23060 5.25609 5.29853 5.32994 5.36070 5.43410 5.52348 5.54247 5.57319 5.60923 5.64460 5.72856 5.83870 5.88676 5.98734 6.03809 6.19224 6.37514 6.50295 6.53223 6.59566 6.63881 6.74029 6.88740 7.21166 7.28874 7.63353 7.74066 7.77322 8.11631 8.14351 8.42092 9.17005 9.78871 10.35395 11.23864 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002939 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.572635 B = 9523.773271 C = 9865.589779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C 0.547 3.453 4 O -0.536 6.536 5 N -0.638 5.638 6 C 0.099 3.901 7 C -0.075 4.075 8 C 0.114 3.886 9 C -0.105 4.105 10 C 0.146 3.854 11 N -0.590 5.590 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.171 3.829 21 C -0.125 4.125 22 C -0.124 4.124 23 C 0.104 3.896 24 N -0.718 5.718 25 C 0.534 3.466 26 O -0.560 6.560 27 C -0.112 4.112 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.018 0.982 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.399 0.601 49 H 0.108 0.892 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 -16.934 6.148 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C 0.336 3.664 4 O -0.412 6.412 5 N -0.372 5.372 6 C -0.023 4.023 7 C -0.076 4.076 8 C -0.008 4.008 9 C -0.144 4.144 10 C 0.020 3.980 11 N -0.313 5.313 12 C -0.382 4.382 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.045 3.955 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.020 4.020 24 N -0.370 5.370 25 C 0.321 3.679 26 O -0.439 6.439 27 C -0.152 4.152 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.235 0.765 49 H 0.126 0.874 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.888 -16.783 7.286 19.549 hybrid contribution 0.272 0.419 -0.968 1.089 sum -6.616 -16.364 6.318 18.747 Atomic orbital electron populations 1.21897 0.91499 1.03182 1.03350 1.20897 0.98009 0.92613 0.96752 1.19823 0.80888 0.86156 0.79581 1.90756 1.36828 1.78064 1.35594 1.49608 1.43638 1.15396 1.28579 1.23295 0.94331 1.00130 0.84593 1.21657 0.96522 0.95827 0.93590 1.23078 1.02178 0.83027 0.92492 1.21721 0.95987 0.98589 0.98118 1.20881 0.92380 0.88970 0.95804 1.43999 1.30715 1.41248 1.15307 1.19223 1.38161 0.92837 0.87992 0.91752 1.25119 1.01269 0.95523 0.97605 1.69982 1.51535 1.02074 1.31199 0.86218 0.77327 0.78276 0.84901 1.20267 1.21573 1.21709 1.20812 0.87334 0.91880 0.95517 1.22078 0.98254 0.97259 0.98849 1.22007 0.94946 1.01602 0.97664 1.21438 0.93412 1.01627 0.85535 1.45351 1.13398 1.70539 1.07689 1.19870 0.90221 0.75229 0.82564 1.90736 1.68294 1.49629 1.35232 1.21576 0.92314 1.02259 0.99046 0.91080 0.91726 0.91146 0.90687 0.89788 0.89997 0.90441 0.93152 0.91663 0.92698 0.96475 0.93623 0.88891 0.96433 0.91907 0.92870 0.89654 0.88811 0.89884 0.91266 0.76547 0.87389 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.23 37.16 0.31 -0.66 16 2 C -0.08 -0.74 0.57 -155.45 -0.09 -0.83 16 3 C 0.55 7.28 5.11 -10.99 -0.06 7.22 16 4 O -0.54 -9.59 15.94 5.56 0.09 -9.50 16 5 N -0.64 -7.88 3.38 -185.32 -0.63 -8.51 16 6 C 0.10 1.01 5.50 -8.37 -0.05 0.96 16 7 C -0.07 -1.01 0.83 -155.17 -0.13 -1.14 16 8 C 0.11 1.63 7.57 -8.21 -0.06 1.57 16 9 C -0.10 -1.53 5.25 -26.78 -0.14 -1.67 16 10 C 0.15 2.79 6.41 -3.65 -0.02 2.77 16 11 N -0.59 -13.57 2.96 -172.18 -0.51 -14.07 16 12 C -0.25 -6.51 9.57 -15.06 -0.14 -6.66 16 13 H 0.06 1.64 7.86 -52.49 -0.41 1.23 16 14 C 0.00 0.09 5.01 -17.43 -0.09 0.00 16 15 N -0.90 -25.04 11.03 55.49 0.61 -24.43 16 16 Si 0.90 20.78 29.57 -169.99 -5.03 15.76 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.17 3.66 5.24 -3.64 -0.02 3.64 16 21 C -0.12 -1.96 5.31 -26.77 -0.14 -2.11 16 22 C -0.12 -0.90 4.84 -26.59 -0.13 -1.03 16 23 C 0.10 0.91 6.60 -4.48 -0.03 0.88 16 24 N -0.72 -7.93 5.44 -61.39 -0.33 -8.26 16 25 C 0.53 7.25 6.71 -11.87 -0.08 7.17 16 26 O -0.56 -9.90 17.78 5.56 0.10 -9.80 16 27 C -0.11 -1.19 4.46 -28.10 -0.13 -1.31 16 28 H 0.07 0.35 8.06 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 6.07 -51.93 -0.32 0.12 16 31 H 0.07 0.61 5.92 -51.93 -0.31 0.31 16 32 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 34 H 0.08 1.27 7.54 -51.93 -0.39 0.88 16 35 H 0.05 0.66 7.00 -51.93 -0.36 0.29 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 38 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 39 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.09 2.30 5.95 -51.93 -0.31 1.99 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.09 0.59 6.04 -51.93 -0.31 0.28 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 48 H 0.40 4.09 8.80 -40.82 -0.36 3.73 16 49 H 0.11 1.31 7.80 -51.93 -0.40 0.90 16 50 H 0.11 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -33.57 377.05 -9.09 -42.67 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.08 Total: 1.68 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -1.00 Total: 8.80 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.86 Total: -55.27 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.19 Total: -19.31 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.57 -9.09 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050564496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.810 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds