Wall clock time and date at job start Tue Mar 31 2020 19:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.70313 * 2 1 4 4 O 1.21279 * 120.00116 * 123.64906 * 3 2 1 5 5 N 1.34779 * 119.99950 * 303.65474 * 3 2 1 6 6 C 1.47163 * 136.00225 * 4.60670 * 5 3 2 7 7 C 1.52649 * 87.96994 * 206.71813 * 6 5 3 8 8 C 1.47162 * 135.99801 * 184.96903 * 5 3 2 9 9 C 1.52554 * 113.89477 * 88.17019 * 7 6 5 10 10 C 1.53356 * 109.12849 * 190.30730 * 9 7 6 11 11 N 1.46889 * 108.75075 * 307.76034 * 10 9 7 12 12 C 1.36937 * 120.46061 * 235.60661 * 11 10 9 13 13 H 1.07994 * 120.00535 * 30.23099 * 12 11 10 14 14 C 1.38810 * 119.99775 * 210.23496 * 12 11 10 15 15 N 1.31624 * 120.00325 * 12.77816 * 14 12 11 16 16 Si 1.86801 * 120.00086 * 192.78083 * 14 12 11 17 17 H 1.48502 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47330 * 120.00016 * 16 14 12 19 19 H 1.48505 * 109.47050 * 240.00208 * 16 14 12 20 20 C 1.46890 * 119.07441 * 55.62094 * 11 10 9 21 21 C 1.52558 * 114.25882 * 220.76068 * 7 6 5 22 22 C 1.53348 * 109.66907 * 239.48820 * 2 1 3 23 23 C 1.52919 * 108.67365 * 172.73395 * 22 2 1 24 24 N 1.45758 * 110.48670 * 50.75479 * 23 22 2 25 25 C 1.33351 * 124.10619 * 340.91877 * 24 23 22 26 26 O 1.21276 * 118.24748 * 182.24596 * 25 24 23 27 27 C 1.50173 * 123.50764 * 2.23086 * 25 24 23 28 28 H 1.08999 * 109.47452 * 187.04085 * 1 2 3 29 29 H 1.09003 * 109.46744 * 307.04158 * 1 2 3 30 30 H 1.09001 * 109.47793 * 67.03961 * 1 2 3 31 31 H 1.09004 * 113.48645 * 321.40608 * 6 5 3 32 32 H 1.08998 * 113.49364 * 91.91649 * 6 5 3 33 33 H 1.08998 * 113.48882 * 268.08577 * 8 5 3 34 34 H 1.08995 * 113.48910 * 38.53201 * 8 5 3 35 35 H 1.08996 * 109.52933 * 310.19549 * 9 7 6 36 36 H 1.08995 * 109.52665 * 70.41682 * 9 7 6 37 37 H 1.08997 * 109.59481 * 187.98258 * 10 9 7 38 38 H 1.09000 * 109.71402 * 67.60515 * 10 9 7 39 39 H 0.96998 * 120.00346 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.59108 * 184.59006 * 20 11 10 41 41 H 1.09000 * 109.71526 * 64.21968 * 20 11 10 42 42 H 1.08991 * 109.52715 * 289.75107 * 21 7 6 43 43 H 1.08999 * 109.52848 * 49.89590 * 21 7 6 44 44 H 1.08996 * 109.60569 * 292.48822 * 22 2 1 45 45 H 1.08996 * 109.60854 * 52.97993 * 22 2 1 46 46 H 1.09001 * 109.30397 * 171.06434 * 23 22 2 47 47 H 1.08997 * 109.30179 * 290.44121 * 23 22 2 48 48 H 0.97004 * 117.94443 * 160.92952 * 24 23 22 49 49 H 1.08997 * 109.40596 * 222.28502 * 27 25 24 50 50 H 1.09005 * 109.40605 * 102.54221 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.7904 1.7935 0.8743 5 7 1.6562 2.2713 -0.9716 6 6 0.7287 2.2284 -2.1133 7 6 1.6018 3.2803 -2.7925 8 6 1.9888 3.6512 -1.3599 9 6 2.7463 2.6961 -3.6147 10 6 3.6950 3.8272 -4.0302 11 7 2.9100 4.8900 -4.6719 12 6 3.2254 5.3210 -5.9329 13 1 3.6713 4.6384 -6.6411 14 6 2.9720 6.6352 -6.3008 15 7 2.6686 7.5288 -5.3831 16 14 3.0614 7.1358 -8.0982 17 1 3.4196 5.9546 -8.9238 18 1 1.7422 7.6619 -8.5319 19 1 4.0944 8.1892 -8.2679 20 6 1.7823 5.4843 -3.9421 21 6 0.8197 4.3653 -3.5263 22 6 2.0461 -0.7331 -1.2440 23 6 3.5641 -0.5638 -1.3176 24 7 4.1794 -0.9199 -0.0451 25 6 3.5210 -0.9794 1.1131 26 8 4.1475 -1.2474 2.1163 27 6 2.0454 -0.7320 1.2415 28 1 -0.3634 -1.0199 0.1260 29 1 -0.3633 0.6191 0.8203 30 1 -0.3635 0.4009 -0.9462 31 1 0.7230 1.2700 -2.6326 32 1 -0.2730 2.5845 -1.8730 33 1 1.3334 4.3984 -0.9124 34 1 3.0452 3.8928 -1.2429 35 1 3.2903 1.9663 -3.0152 36 1 2.3452 2.2117 -4.5049 37 1 4.4348 3.4441 -4.7331 38 1 4.1992 4.2261 -3.1500 39 1 2.4919 8.4472 -5.6402 40 1 1.2623 6.1929 -4.5869 41 1 2.1493 5.9993 -3.0543 42 1 0.3509 3.9396 -4.4134 43 1 0.0519 4.7700 -2.8670 44 1 1.7994 -1.7924 -1.1730 45 1 1.5871 -0.3074 -2.1363 46 1 3.9610 -1.2079 -2.1023 47 1 3.7998 0.4738 -1.5539 48 1 5.1272 -1.1263 -0.0404 49 1 1.8559 -0.1231 2.1255 50 1 1.5258 -1.6850 1.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050564496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:32 Heat of formation + Delta-G solvation = -40.152786 kcal Electronic energy + Delta-G solvation = -31257.928098 eV Core-core repulsion = 27285.566303 eV Total energy + Delta-G solvation = -3972.361795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49668 -41.26971 -39.56127 -37.57610 -37.44087 -35.19851 -34.19665 -32.22222 -31.36988 -30.74277 -29.16976 -28.50033 -27.14010 -26.01685 -24.74738 -24.00440 -23.63965 -22.33771 -21.18519 -19.64553 -19.34564 -18.40053 -18.22095 -17.64810 -17.16280 -17.01952 -16.84257 -16.63936 -16.16553 -15.69769 -15.53906 -15.25095 -14.94407 -14.87910 -14.65059 -14.47098 -14.11291 -13.98175 -13.89316 -13.48923 -13.28749 -13.12274 -13.05314 -13.04619 -12.88685 -12.73518 -12.67318 -12.57280 -12.21725 -12.16705 -11.96458 -11.79043 -11.76559 -11.28747 -11.21492 -11.08040 -10.87349 -10.61563 -10.45995 -10.10604 -9.68017 -8.58197 -7.82115 -5.31783 1.48504 1.51051 1.58085 1.60542 1.62086 1.81989 2.34908 2.54065 3.23140 3.29998 3.42922 3.46414 3.53252 3.72717 3.75120 3.84743 3.91140 4.10495 4.27457 4.34982 4.38143 4.41455 4.50882 4.55051 4.58356 4.65328 4.66113 4.70516 4.75102 4.77693 4.84639 4.90734 4.93398 4.97605 5.02475 5.08297 5.16576 5.20499 5.27767 5.31410 5.41045 5.43437 5.60821 5.70303 5.77557 5.88144 6.32080 6.46205 6.80239 7.10975 7.17832 7.21329 7.92350 8.42803 9.22540 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002939 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.572635 B = 9523.773271 C = 9865.589779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C 0.541 3.459 4 O -0.594 6.594 5 N -0.633 5.633 6 C 0.117 3.883 7 C -0.075 4.075 8 C 0.105 3.895 9 C -0.089 4.089 10 C 0.142 3.858 11 N -0.607 5.607 12 C -0.257 4.257 13 H 0.067 0.933 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.299 1.299 20 C 0.175 3.825 21 C -0.108 4.108 22 C -0.120 4.120 23 C 0.097 3.903 24 N -0.714 5.714 25 C 0.523 3.477 26 O -0.616 6.616 27 C -0.110 4.110 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.051 0.949 38 H -0.004 1.004 39 H 0.248 0.752 40 H 0.057 0.943 41 H -0.013 1.013 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.045 0.955 48 H 0.399 0.601 49 H 0.084 0.916 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -20.355 4.458 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C 0.332 3.668 4 O -0.475 6.475 5 N -0.366 5.366 6 C -0.004 4.004 7 C -0.076 4.076 8 C -0.018 4.018 9 C -0.128 4.128 10 C 0.016 3.984 11 N -0.331 5.331 12 C -0.387 4.387 13 H 0.085 0.915 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.216 1.216 19 H -0.226 1.226 20 C 0.049 3.951 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.027 4.027 24 N -0.363 5.363 25 C 0.312 3.688 26 O -0.499 6.499 27 C -0.150 4.150 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.005 0.995 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.064 0.936 48 H 0.234 0.766 49 H 0.103 0.897 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.621 -20.236 5.536 23.080 hybrid contribution 1.251 1.565 -0.414 2.045 sum -8.370 -18.671 5.122 21.093 Atomic orbital electron populations 1.21946 0.88753 1.05083 1.03801 1.20924 0.99904 0.89316 0.97171 1.20700 0.79827 0.87709 0.78537 1.90739 1.39460 1.79345 1.37940 1.49618 1.43797 1.14191 1.28967 1.23345 0.93998 1.00516 0.82512 1.21534 0.96985 0.96682 0.92441 1.23045 1.00318 0.84707 0.93709 1.21523 0.95340 0.96821 0.99094 1.21006 0.93297 0.89493 0.94602 1.44271 1.31866 1.41996 1.14943 1.19558 1.37008 0.92886 0.89271 0.91543 1.25836 1.01937 0.95695 1.01133 1.70158 1.53260 1.02020 1.32892 0.85238 0.76750 0.77830 0.80812 1.18867 1.21589 1.22613 1.20626 0.87820 0.93351 0.93297 1.21826 0.97300 0.95757 0.99863 1.22135 0.93222 1.03357 0.97051 1.21694 0.95118 1.00930 0.84912 1.45451 1.13585 1.69095 1.08169 1.20515 0.91581 0.74383 0.82371 1.90700 1.69674 1.52403 1.37163 1.21620 0.90540 1.03819 0.99010 0.88108 0.92875 0.89534 0.86927 0.87200 0.89815 0.93827 0.91243 0.90176 0.93049 0.98586 0.94281 0.92497 0.99461 0.91109 0.90587 0.86497 0.86606 0.86659 0.93646 0.76620 0.89711 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.23 71.98 0.59 -0.56 16 2 C -0.07 -1.04 0.57 -52.79 -0.03 -1.07 16 3 C 0.54 13.52 5.11 87.66 0.45 13.96 16 4 O -0.59 -21.78 15.94 -3.02 -0.05 -21.83 16 5 N -0.63 -14.06 3.38 -858.61 -2.90 -16.96 16 6 C 0.12 1.78 5.50 83.21 0.46 2.24 16 7 C -0.08 -1.85 0.83 -52.60 -0.04 -1.89 16 8 C 0.11 2.95 7.57 83.32 0.63 3.58 16 9 C -0.09 -2.37 5.25 30.57 0.16 -2.21 16 10 C 0.14 5.44 6.41 86.42 0.55 5.99 16 11 N -0.61 -28.37 2.96 -698.65 -2.07 -30.43 16 12 C -0.26 -13.40 9.57 84.03 0.80 -12.59 16 13 H 0.07 3.37 7.86 -2.91 -0.02 3.35 16 14 C -0.05 -2.74 5.01 84.86 0.42 -2.32 16 15 N -0.94 -53.92 11.03 21.65 0.24 -53.68 16 16 Si 0.96 43.29 29.57 68.60 2.03 45.32 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 20 C 0.17 7.68 5.24 86.42 0.45 8.14 16 21 C -0.11 -3.20 5.31 30.57 0.16 -3.04 16 22 C -0.12 -1.09 4.84 30.68 0.15 -0.95 16 23 C 0.10 1.37 6.60 86.49 0.57 1.94 16 24 N -0.71 -14.93 5.44 -467.32 -2.54 -17.48 16 25 C 0.52 13.97 6.71 87.71 0.59 14.56 16 26 O -0.62 -22.52 17.78 -3.02 -0.05 -22.57 16 27 C -0.11 -2.12 4.46 29.71 0.13 -1.99 16 28 H 0.10 0.32 8.06 -2.39 -0.02 0.30 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.47 6.07 -2.39 -0.01 0.45 16 31 H 0.11 0.98 5.92 -2.38 -0.01 0.96 16 32 H 0.11 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 34 H 0.04 1.50 7.54 -2.39 -0.02 1.49 16 35 H 0.07 1.62 7.00 -2.39 -0.02 1.60 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.96 7.92 -2.39 -0.02 1.94 16 38 H 0.00 -0.16 7.61 -2.39 -0.02 -0.18 16 39 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.06 2.91 5.95 -2.38 -0.01 2.90 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 44 H 0.12 0.47 8.12 -2.39 -0.02 0.45 16 45 H 0.12 0.60 6.04 -2.39 -0.01 0.59 16 46 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 0.88 6.43 -2.39 -0.02 0.87 16 48 H 0.40 8.08 8.80 -92.71 -0.82 7.27 16 49 H 0.08 2.06 7.80 -2.39 -0.02 2.04 16 50 H 0.14 1.63 8.04 -2.38 -0.02 1.62 16 Total: -1.00 -81.29 377.05 0.84 -80.44 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.14 Total: 13.39 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 6.05 Total: 23.80 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.27 Total: -118.55 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.10 Total: -44.40 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.29 0.84 -80.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050564496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.292 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds