Wall clock time and date at job start Tue Mar 31 2020 18:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36776 * 125.80347 * 2 1 4 4 C 1.47264 * 126.93783 * 0.02562 * 3 2 1 5 5 O 1.21624 * 120.00268 * 359.70605 * 4 3 2 6 6 N 1.34780 * 119.99728 * 179.43689 * 4 3 2 7 7 C 1.46497 * 119.99751 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47072 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.67724 * 300.76912 * 8 7 6 10 10 C 1.53289 * 109.68245 * 180.25051 * 8 7 6 11 11 O 1.42961 * 109.22366 * 187.97684 * 10 8 7 12 12 C 1.42962 * 114.16878 * 62.57933 * 11 10 8 13 13 C 1.53299 * 109.22085 * 297.42191 * 12 11 10 14 14 N 1.47150 * 109.67804 * 61.28488 * 8 7 6 15 15 C 1.36939 * 120.98371 * 350.23522 * 14 8 7 16 16 H 1.08000 * 119.99762 * 31.05396 * 15 14 8 17 17 C 1.38813 * 119.99778 * 211.04859 * 15 14 8 18 18 N 1.31619 * 119.99928 * 10.78888 * 17 15 14 19 19 Si 1.86797 * 119.99824 * 190.78216 * 17 15 14 20 20 H 1.48503 * 109.47138 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47213 * 120.00387 * 19 17 15 22 22 H 1.48509 * 109.47190 * 240.00535 * 19 17 15 23 23 C 1.46687 * 106.11825 * 179.73876 * 3 2 1 24 24 C 1.34485 * 106.33216 * 0.22221 * 23 3 2 25 25 N 1.34664 * 125.80252 * 180.12393 * 2 1 3 26 26 C 1.46497 * 124.85059 * 0.02562 * 25 2 1 27 27 C 1.53001 * 109.46737 * 120.28516 * 26 25 2 28 28 C 1.53002 * 109.47181 * 240.28491 * 26 25 2 29 29 H 1.08994 * 109.46976 * 90.02517 * 1 2 3 30 30 H 1.08995 * 109.46908 * 210.02658 * 1 2 3 31 31 H 1.09000 * 109.47209 * 330.02484 * 1 2 3 32 32 H 0.96998 * 119.99512 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.47240 * 299.99571 * 7 6 4 34 34 H 1.08997 * 109.47372 * 59.99963 * 7 6 4 35 35 H 1.08997 * 109.51513 * 307.89803 * 10 8 7 36 36 H 1.09004 * 109.51536 * 68.00052 * 10 8 7 37 37 H 1.08994 * 109.50819 * 57.34495 * 12 11 10 38 38 H 1.08996 * 109.51184 * 177.49958 * 12 11 10 39 39 H 1.09000 * 109.67929 * 172.02482 * 13 12 11 40 40 H 1.09001 * 109.68207 * 292.53728 * 13 12 11 41 41 H 0.96999 * 119.99529 * 179.97438 * 18 17 15 42 42 H 1.07993 * 126.83356 * 180.23233 * 23 3 2 43 43 H 1.07995 * 125.57433 * 180.02562 * 24 23 3 44 44 H 1.09001 * 109.47234 * 0.28734 * 26 25 2 45 45 H 1.09001 * 109.47081 * 60.00124 * 27 26 25 46 46 H 1.09003 * 109.47029 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.47353 * 300.00268 * 27 26 25 48 48 H 1.09003 * 109.46988 * 180.02562 * 28 26 25 49 49 H 1.08992 * 109.47329 * 300.00101 * 28 26 25 50 50 H 1.09001 * 109.46648 * 60.00450 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 -0.0044 6 7 2.7849 3.5054 0.0119 7 6 2.3503 4.9044 0.0119 8 6 3.5765 5.8194 0.0266 9 1 4.1761 5.6154 0.9138 10 6 3.1271 7.2849 0.0329 11 8 4.2685 8.1281 -0.1407 12 6 4.9442 7.9490 -1.3878 13 6 5.4866 6.5174 -1.4669 14 7 4.3836 5.5859 -1.1814 15 6 4.1160 4.5332 -2.0154 16 1 3.1030 4.1750 -2.1247 17 6 5.1466 3.9268 -2.7203 18 7 6.3985 4.2149 -2.4337 19 14 4.7568 2.7018 -4.0756 20 1 3.2844 2.5538 -4.2005 21 1 5.3155 3.1915 -5.3613 22 1 5.3604 1.3864 -3.7425 23 6 3.6882 0.6152 0.0064 24 6 3.6096 -0.7274 0.0047 25 7 2.2947 -1.0922 -0.0024 26 6 1.8094 -2.4744 -0.0059 27 6 2.3273 -3.1935 -1.2531 28 6 2.3147 -3.1955 1.2454 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.7310 3.2913 0.0202 33 1 1.7602 5.1016 -0.8831 34 1 1.7435 5.0965 0.8967 35 1 2.4229 7.4533 -0.7817 36 1 2.6456 7.5141 0.9836 37 1 4.2465 8.1197 -2.2076 38 1 5.7707 8.6559 -1.4589 39 1 5.8780 6.3278 -2.4664 40 1 6.2795 6.3841 -0.7309 41 1 7.1187 3.7908 -2.9261 42 1 4.5890 1.2109 0.0117 43 1 4.4497 -1.4059 0.0086 44 1 0.7194 -2.4768 -0.0114 45 1 3.4173 -3.1911 -1.2476 46 1 1.9659 -4.2218 -1.2560 47 1 1.9675 -2.6798 -2.1445 48 1 1.9539 -4.2241 1.2425 49 1 3.4046 -3.1932 1.2509 50 1 1.9456 -2.6832 2.1339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051076341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:38 Heat of formation + Delta-G solvation = -28.732547 kcal Electronic energy + Delta-G solvation = -30579.846378 eV Core-core repulsion = 26607.979801 eV Total energy + Delta-G solvation = -3971.866576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40924 -40.54092 -39.61687 -36.89144 -36.13191 -35.24433 -33.28188 -32.54134 -32.15387 -30.71123 -28.98435 -28.21167 -27.70813 -26.55760 -25.22418 -23.87606 -23.14986 -22.79586 -21.39303 -20.51371 -19.55459 -18.66068 -18.08100 -17.56359 -17.18628 -16.94818 -16.35668 -16.31939 -16.22410 -15.91744 -15.50521 -15.32097 -15.12917 -14.97273 -14.61895 -14.43188 -14.19952 -14.02728 -13.95366 -13.62018 -13.44912 -13.39818 -13.09987 -13.04247 -12.95941 -12.88698 -12.73925 -12.49254 -12.38197 -12.21346 -12.13268 -11.98946 -11.97468 -11.84206 -11.28955 -10.86603 -10.58196 -10.53537 -9.85213 -9.45086 -9.04872 -8.59706 -7.85845 -5.35476 0.83160 1.37872 1.42825 1.51056 1.52638 1.85673 2.44611 2.60905 2.72907 3.05549 3.31128 3.46531 3.63265 3.80406 3.96478 4.01903 4.06079 4.08656 4.20282 4.26875 4.33814 4.41327 4.49367 4.55127 4.62608 4.64779 4.65848 4.67972 4.70306 4.76667 4.79592 4.82516 4.85541 5.00177 5.02323 5.05999 5.12973 5.21751 5.24241 5.30622 5.33570 5.62382 5.70464 5.75427 5.83248 6.15779 6.30870 6.39347 6.42689 6.87171 7.14001 7.50845 7.78344 8.33946 9.18998 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003810 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.240328 B = 7347.995298 C = 8528.240140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.097 3.903 3 C -0.267 4.267 4 C 0.579 3.421 5 O -0.599 6.599 6 N -0.696 5.696 7 C 0.144 3.856 8 C 0.126 3.874 9 H 0.034 0.966 10 C 0.059 3.941 11 O -0.397 6.397 12 C 0.046 3.954 13 C 0.150 3.850 14 N -0.605 5.605 15 C -0.235 4.235 16 H 0.063 0.937 17 C -0.027 4.027 18 N -0.925 5.925 19 Si 0.942 3.058 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.186 4.186 24 C -0.006 4.006 25 N -0.430 5.430 26 C 0.113 3.887 27 C -0.160 4.160 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.006 0.994 41 H 0.250 0.750 42 H 0.131 0.869 43 H 0.190 0.810 44 H 0.114 0.886 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.047 0.953 48 H 0.101 0.899 49 H 0.064 0.936 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 -12.970 6.473 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.277 4.277 4 C 0.370 3.630 5 O -0.484 6.484 6 N -0.344 5.344 7 C 0.020 3.980 8 C 0.020 3.980 9 H 0.052 0.948 10 C -0.020 4.020 11 O -0.315 6.315 12 C -0.031 4.031 13 C 0.024 3.976 14 N -0.331 5.331 15 C -0.365 4.365 16 H 0.081 0.919 17 C -0.223 4.223 18 N -0.571 5.571 19 Si 0.772 3.228 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.210 4.210 24 C -0.132 4.132 25 N -0.107 5.107 26 C 0.013 3.987 27 C -0.218 4.218 28 C -0.214 4.214 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.244 0.756 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.024 0.976 41 H 0.059 0.941 42 H 0.149 0.851 43 H 0.207 0.793 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.121 0.879 47 H 0.067 0.933 48 H 0.119 0.881 49 H 0.083 0.917 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.350 -13.055 6.531 16.817 hybrid contribution 0.906 -0.572 -1.296 1.682 sum -7.443 -13.627 5.236 16.386 Atomic orbital electron populations 1.20499 0.86019 1.04296 1.03368 1.20512 0.94526 0.85319 1.01759 1.20259 0.94430 0.91883 1.21153 1.17688 0.84917 0.85154 0.75241 1.90608 1.17586 1.85261 1.54907 1.45794 1.10315 1.05436 1.72899 1.21074 0.95614 0.80527 1.00783 1.21548 0.91824 0.94622 0.89997 0.94791 1.22970 0.87445 0.89000 1.02548 1.87798 1.43858 1.61285 1.38577 1.23221 0.96558 0.98046 0.85323 1.21248 0.89139 0.87155 1.00048 1.44312 1.35611 1.29652 1.23529 1.19231 0.92066 1.07110 1.18071 0.91925 1.25485 0.95246 0.99529 1.02058 1.70095 0.98217 1.46326 1.42500 0.85589 0.76948 0.79944 0.80293 1.21240 1.21889 1.21382 1.22107 0.95403 0.94849 1.08645 1.21815 0.86691 0.95310 1.09425 1.44076 1.05218 1.06381 1.54977 1.21873 1.01307 0.77345 0.98211 1.22176 1.02276 1.01790 0.95553 1.22152 1.02382 1.01624 0.95262 0.90667 0.88856 0.90197 0.75569 0.93472 0.90429 0.93229 0.86393 0.93815 0.87631 0.91537 0.97555 0.94091 0.85097 0.79299 0.86817 0.91849 0.87865 0.93347 0.88074 0.91736 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.33 71.23 0.66 -1.51 16 2 C 0.10 3.01 6.89 41.78 0.29 3.30 16 3 C -0.27 -10.20 6.29 -19.04 -0.12 -10.32 16 4 C 0.58 24.79 7.81 86.62 0.68 25.47 16 5 O -0.60 -27.20 14.81 -4.11 -0.06 -27.26 16 6 N -0.70 -29.50 3.80 -466.53 -1.77 -31.27 16 7 C 0.14 5.73 4.44 86.38 0.38 6.11 16 8 C 0.13 5.12 3.20 44.97 0.14 5.27 16 9 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 10 C 0.06 2.05 6.29 72.08 0.45 2.50 16 11 O -0.40 -15.06 10.74 -148.98 -1.60 -16.66 16 12 C 0.05 1.77 6.99 72.08 0.50 2.27 16 13 C 0.15 7.04 5.38 86.35 0.46 7.50 16 14 N -0.61 -29.09 3.03 -673.68 -2.04 -31.14 16 15 C -0.23 -12.28 7.11 84.03 0.60 -11.68 16 16 H 0.06 3.43 5.81 -2.91 -0.02 3.42 16 17 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 18 N -0.93 -51.93 11.13 21.65 0.24 -51.69 16 19 Si 0.94 45.61 29.57 68.60 2.03 47.64 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 C -0.19 -6.59 10.56 23.62 0.25 -6.34 16 24 C -0.01 -0.16 10.17 83.11 0.85 0.68 16 25 N -0.43 -10.67 2.57 -487.57 -1.25 -11.92 16 26 C 0.11 1.72 3.44 44.99 0.15 1.88 16 27 C -0.16 -2.16 9.23 71.98 0.66 -1.49 16 28 C -0.16 -1.78 9.23 71.98 0.66 -1.12 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 1.64 6.97 -2.39 -0.02 1.62 16 31 H 0.08 2.44 6.47 -2.39 -0.02 2.42 16 32 H 0.41 18.32 6.50 -92.71 -0.60 17.72 16 33 H 0.05 2.04 7.53 -2.39 -0.02 2.02 16 34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.07 3.47 6.32 -2.39 -0.02 3.45 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 42 H 0.13 4.95 7.69 -2.91 -0.02 4.92 16 43 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.11 1.42 6.48 -2.39 -0.02 1.40 16 45 H 0.06 0.90 7.88 -2.39 -0.02 0.88 16 46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.77 7.88 -2.39 -0.02 0.75 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.87 391.97 2.94 -65.93 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.33 Total: 34.84 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 7.06 Total: 21.52 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -4.82 Total: -126.02 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -1.66 Total: -43.92 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.87 2.94 -65.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051076341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.202 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds