Wall clock time and date at job start Tue Mar 31 2020 19:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.43924 * 2 1 4 4 O 1.21279 * 119.99708 * 115.13542 * 3 2 1 5 5 N 1.34776 * 120.00203 * 295.13918 * 3 2 1 6 6 C 1.46930 * 120.71008 * 4.79817 * 5 3 2 7 7 C 1.53185 * 108.94377 * 125.75526 * 6 5 3 8 8 C 1.53197 * 109.27375 * 55.29178 * 7 6 5 9 9 C 1.52072 * 109.67844 * 300.05130 * 8 7 6 10 10 C 1.54347 * 110.60042 * 295.85183 * 9 8 7 11 11 C 1.54460 * 102.86782 * 276.44349 * 10 9 8 12 12 N 1.47083 * 107.29867 * 338.53149 * 11 10 9 13 13 C 1.36934 * 125.62570 * 178.99795 * 12 11 10 14 14 H 1.08004 * 120.00268 * 180.02562 * 13 12 11 15 15 C 1.38810 * 120.00095 * 0.02572 * 13 12 11 16 16 N 1.31622 * 119.99842 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00293 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46899 * 90.00182 * 17 15 13 19 19 H 1.48501 * 109.47109 * 210.00060 * 17 15 13 20 20 H 1.48495 * 109.46765 * 330.00184 * 17 15 13 21 21 C 1.47585 * 108.74980 * 359.02224 * 12 11 10 22 22 C 1.47102 * 120.71323 * 184.52611 * 5 3 2 23 23 C 1.54629 * 110.48682 * 122.54531 * 2 1 3 24 24 C 1.54480 * 101.79936 * 143.58521 * 23 2 1 25 25 N 1.46815 * 105.44417 * 334.62909 * 24 23 2 26 26 C 1.34415 * 111.31968 * 16.96362 * 25 24 23 27 27 O 1.21284 * 124.94800 * 179.58426 * 26 25 24 28 28 H 1.09003 * 109.46653 * 283.03817 * 1 2 3 29 29 H 1.09002 * 109.47000 * 43.03170 * 1 2 3 30 30 H 1.08996 * 109.47744 * 163.03539 * 1 2 3 31 31 H 1.09002 * 109.56006 * 245.59510 * 6 5 3 32 32 H 1.09001 * 109.55827 * 5.91545 * 6 5 3 33 33 H 1.08992 * 109.50593 * 175.23797 * 7 6 5 34 34 H 1.09005 * 109.50241 * 295.35795 * 7 6 5 35 35 H 1.09002 * 109.43450 * 60.11698 * 8 7 6 36 36 H 1.08999 * 109.43335 * 179.97438 * 8 7 6 37 37 H 1.09001 * 110.73403 * 34.79074 * 10 9 8 38 38 H 1.09002 * 110.72985 * 157.91570 * 10 9 8 39 39 H 1.09001 * 109.87994 * 97.95249 * 11 10 9 40 40 H 1.08991 * 109.87683 * 219.10719 * 11 10 9 41 41 H 0.96999 * 119.99934 * 179.97438 * 16 15 13 42 42 H 1.08998 * 110.37833 * 264.44376 * 21 12 11 43 43 H 1.09002 * 110.37831 * 142.09253 * 21 12 11 44 44 H 1.09000 * 109.57348 * 352.07196 * 22 5 3 45 45 H 1.08999 * 109.57568 * 112.45971 * 22 5 3 46 46 H 1.08995 * 110.97191 * 261.72581 * 23 2 1 47 47 H 1.09005 * 110.96764 * 25.45086 * 23 2 1 48 48 H 1.08998 * 110.24393 * 93.60568 * 24 23 2 49 49 H 1.09003 * 110.24404 * 215.60326 * 24 23 2 50 50 H 0.97006 * 124.33304 * 196.99543 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.6860 1.8245 0.9509 5 7 1.8270 2.2168 -1.0566 6 6 0.9784 1.7700 -2.1698 7 6 -0.1305 2.8025 -2.3953 8 6 0.4998 4.1811 -2.6177 9 6 1.3180 4.5729 -1.3972 10 6 0.4074 4.7326 -0.1613 11 6 -0.1273 6.1739 -0.3118 12 7 0.8081 6.8983 -1.1857 13 6 0.6812 8.2026 -1.5828 14 1 1.4248 8.6452 -2.2290 15 6 -0.4033 8.9560 -1.1549 16 7 -1.3094 8.4168 -0.3670 17 14 -0.5762 10.7355 -1.6961 18 1 -1.3511 10.7950 -2.9616 19 1 -1.2866 11.5061 -0.6441 20 1 0.7715 11.3200 -1.9130 21 6 1.9058 5.9874 -1.5643 22 6 2.4160 3.5633 -1.1173 23 6 2.0712 -0.7792 1.2210 24 6 3.3217 -1.4660 0.6285 25 7 3.0600 -1.5794 -0.8116 26 6 2.0622 -0.7634 -1.1928 27 8 1.6490 -0.6544 -2.3279 28 1 -0.3633 0.2319 1.0012 29 1 -0.3633 0.7512 -0.7013 30 1 -0.3634 -0.9829 -0.2998 31 1 1.5807 1.6781 -3.0737 32 1 0.5343 0.8050 -1.9256 33 1 -0.7146 2.5237 -3.2722 34 1 -0.7798 2.8362 -1.5204 35 1 1.1481 4.1465 -3.4932 36 1 -0.2871 4.9178 -2.7789 37 1 -0.4106 4.0127 -0.1890 38 1 0.9828 4.6255 0.7583 39 1 -1.1188 6.1560 -0.7643 40 1 -0.1718 6.6565 0.6644 41 1 -2.0670 8.9434 -0.0677 42 1 2.7591 6.1246 -0.9001 43 1 2.1992 6.1565 -2.6004 44 1 2.8914 3.7973 -0.1647 45 1 3.1564 3.6024 -1.9164 46 1 2.3449 -0.0993 2.0277 47 1 1.3467 -1.5176 1.5649 48 1 4.2066 -0.8544 0.8040 49 1 3.4526 -2.4550 1.0678 50 1 3.5448 -2.1681 -1.4111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054197531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:46 Heat of formation + Delta-G solvation = -25.527419 kcal Electronic energy + Delta-G solvation = -31564.550322 eV Core-core repulsion = 27592.822731 eV Total energy + Delta-G solvation = -3971.727591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.75943 -39.72792 -38.28297 -36.80246 -35.72654 -33.76058 -32.68990 -31.78332 -30.06154 -29.08336 -28.57921 -26.31021 -25.64417 -25.00224 -23.67395 -22.38630 -22.10424 -21.37543 -20.07943 -18.80095 -17.98477 -17.72501 -17.58883 -16.71405 -16.20948 -15.65118 -15.15161 -14.90816 -14.85083 -14.55327 -14.35022 -14.05391 -13.96735 -13.69790 -13.23741 -13.17174 -13.02889 -12.91367 -12.62373 -12.52321 -12.24497 -11.99190 -11.86233 -11.69710 -11.62431 -11.37187 -10.99599 -10.91160 -10.82511 -10.65997 -10.49773 -10.08682 -10.03802 -9.87023 -9.79202 -9.68180 -9.59760 -9.50657 -9.43348 -8.53660 -8.41115 -6.75558 -5.65178 -2.98090 2.07069 2.51789 2.93291 3.07793 3.43210 3.48240 3.50189 3.85116 4.04128 4.27854 4.52970 4.54686 4.66851 4.94499 4.98434 5.13239 5.15902 5.22474 5.29059 5.36110 5.37198 5.44911 5.53694 5.56323 5.64000 5.71263 5.74380 5.76885 5.90983 6.01099 6.03740 6.05560 6.14630 6.21950 6.33462 6.41020 6.46532 6.54679 6.58430 6.63958 6.71732 6.77095 6.88636 7.01413 7.46709 7.62945 7.72535 7.82721 7.89839 8.10891 8.32128 9.28416 9.88742 10.55911 11.46314 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002985 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.256925 B = 9379.518003 C = 9559.226088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.534 3.466 4 O -0.535 6.535 5 N -0.593 5.593 6 C 0.085 3.915 7 C -0.138 4.138 8 C -0.097 4.097 9 C -0.084 4.084 10 C -0.130 4.130 11 C 0.181 3.819 12 N -0.603 5.603 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.149 3.851 22 C 0.128 3.872 23 C -0.119 4.119 24 C 0.099 3.901 25 N -0.727 5.727 26 C 0.531 3.469 27 O -0.513 6.513 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.019 0.981 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -23.989 0.787 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C 0.320 3.680 4 O -0.412 6.412 5 N -0.324 5.324 6 C -0.037 4.037 7 C -0.176 4.176 8 C -0.134 4.134 9 C -0.086 4.086 10 C -0.169 4.169 11 C 0.057 3.943 12 N -0.329 5.329 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C 0.022 3.978 22 C 0.006 3.994 23 C -0.157 4.157 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.316 3.684 27 O -0.388 6.388 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.081 -23.435 0.797 24.224 hybrid contribution 0.110 0.734 -0.543 0.920 sum 6.191 -22.701 0.254 23.531 Atomic orbital electron populations 1.22016 0.89607 1.04075 1.04378 1.21597 0.99662 0.94431 0.96803 1.19596 0.80131 0.85839 0.82442 1.90681 1.41480 1.75232 1.33817 1.48094 1.48972 1.15578 1.19741 1.22623 0.92382 0.99401 0.89247 1.22056 0.97739 0.95691 1.02145 1.21228 0.99776 0.96039 0.96366 1.21291 0.95620 0.95155 0.96545 1.22858 0.98228 0.99953 0.95818 1.21132 0.92730 0.85707 0.94751 1.44484 1.23287 1.08699 1.56429 1.19050 1.06217 0.85572 1.24517 0.90558 1.24783 0.97390 0.98333 1.00016 1.69981 1.13430 1.35289 1.38241 0.86139 0.77531 0.84622 0.77597 1.21705 1.21756 1.20768 1.21380 0.91565 0.87356 0.97500 1.21436 0.95122 0.80047 1.02816 1.22734 0.96526 0.99368 0.97022 1.22171 0.98997 1.01703 0.79695 1.46154 1.37108 1.43900 1.11118 1.20334 0.79608 0.79547 0.88929 1.90745 1.61109 1.65696 1.21289 0.90443 0.89692 0.91002 0.91412 0.86489 0.90992 0.91305 0.92568 0.90334 0.92371 0.92693 0.93797 0.94299 0.93883 0.96353 0.94288 0.88996 0.91889 0.86990 0.89128 0.90459 0.89754 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.02 37.16 0.30 -1.03 16 2 C -0.12 -1.23 0.56 -155.67 -0.09 -1.32 16 3 C 0.53 7.49 6.53 -10.99 -0.07 7.42 16 4 O -0.53 -8.83 14.88 5.56 0.08 -8.75 16 5 N -0.59 -8.51 2.87 -173.49 -0.50 -9.01 16 6 C 0.09 1.12 3.78 -3.71 -0.01 1.11 16 7 C -0.14 -1.89 5.70 -26.53 -0.15 -2.04 16 8 C -0.10 -1.59 4.67 -27.10 -0.13 -1.72 16 9 C -0.08 -1.50 0.55 -154.34 -0.08 -1.58 16 10 C -0.13 -2.56 5.67 -25.26 -0.14 -2.71 16 11 C 0.18 4.50 5.01 -2.96 -0.01 4.49 16 12 N -0.60 -15.56 3.39 -170.33 -0.58 -16.14 16 13 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 14 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 17 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C 0.15 3.13 6.16 -2.88 -0.02 3.11 16 22 C 0.13 2.03 5.08 -4.34 -0.02 2.00 16 23 C -0.12 -0.91 6.04 -25.10 -0.15 -1.06 16 24 C 0.10 0.62 7.78 -3.09 -0.02 0.60 16 25 N -0.73 -5.66 6.24 -59.16 -0.37 -6.03 16 26 C 0.53 5.74 6.72 -10.86 -0.07 5.66 16 27 O -0.51 -6.78 14.17 5.55 0.08 -6.70 16 28 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.08 0.88 4.74 -51.93 -0.25 0.64 16 30 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 31 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 32 H 0.12 1.45 2.31 -51.93 -0.12 1.33 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.97 6.04 -51.93 -0.31 0.66 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.52 7.83 -51.93 -0.41 1.11 16 37 H 0.06 1.07 6.09 -51.93 -0.32 0.75 16 38 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 39 H 0.04 1.20 7.39 -51.93 -0.38 0.81 16 40 H 0.04 1.08 7.50 -51.93 -0.39 0.70 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 43 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 44 H 0.09 1.59 6.81 -51.93 -0.35 1.23 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.11 1.00 6.88 -51.93 -0.36 0.64 16 47 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.41 2.44 8.96 -40.82 -0.37 2.08 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -33.52 368.01 -8.93 -42.45 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.81 Total: 2.03 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.94 Total: 6.07 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.87 Total: -58.06 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.16 Total: -15.45 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.52 -8.93 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.926 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds