Wall clock time and date at job start Tue Mar 31 2020 19:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 110.43030 * 2 1 4 4 O 1.21278 * 120.00237 * 248.64560 * 3 2 1 5 5 N 1.34779 * 119.99941 * 68.65067 * 3 2 1 6 6 C 1.46943 * 120.71194 * 355.57964 * 5 3 2 7 7 C 1.53178 * 108.92960 * 234.23936 * 6 5 3 8 8 C 1.53191 * 109.28511 * 304.67982 * 7 6 5 9 9 C 1.52076 * 109.67545 * 59.95990 * 8 7 6 10 10 C 1.54347 * 110.61051 * 64.19115 * 9 8 7 11 11 C 1.54469 * 102.85436 * 83.54030 * 10 9 8 12 12 N 1.47085 * 107.30336 * 21.47708 * 11 10 9 13 13 C 1.36940 * 125.63030 * 180.98107 * 12 11 10 14 14 H 1.07992 * 120.00161 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99449 * 359.74605 * 13 12 11 16 16 N 1.31618 * 120.00643 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99871 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99981 * 17 15 13 19 19 H 1.48501 * 109.47357 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47052 * 300.00540 * 17 15 13 21 21 C 1.47578 * 108.74640 * 1.24307 * 12 11 10 22 22 C 1.47107 * 120.71327 * 175.56452 * 5 3 2 23 23 C 1.54628 * 110.49091 * 122.54252 * 2 1 3 24 24 C 1.54830 * 101.60377 * 143.57180 * 23 2 1 25 25 N 1.46766 * 105.49495 * 334.56662 * 24 23 2 26 26 C 1.34415 * 111.29959 * 17.04137 * 25 24 23 27 27 O 1.21280 * 124.94345 * 179.62641 * 26 25 24 28 28 H 1.08996 * 109.47418 * 67.70674 * 1 2 3 29 29 H 1.09000 * 109.46729 * 187.70400 * 1 2 3 30 30 H 1.09003 * 109.46815 * 307.70112 * 1 2 3 31 31 H 1.09002 * 109.55879 * 114.40379 * 6 5 3 32 32 H 1.08993 * 109.56122 * 354.07759 * 6 5 3 33 33 H 1.08999 * 109.50567 * 184.74017 * 7 6 5 34 34 H 1.09006 * 109.50703 * 64.61902 * 7 6 5 35 35 H 1.09003 * 109.43720 * 299.90579 * 8 7 6 36 36 H 1.08991 * 109.41033 * 180.02562 * 8 7 6 37 37 H 1.08998 * 110.74166 * 325.19864 * 10 9 8 38 38 H 1.09004 * 110.89331 * 201.94780 * 10 9 8 39 39 H 1.08997 * 109.87610 * 262.04864 * 11 10 9 40 40 H 1.09001 * 109.87903 * 140.90411 * 11 10 9 41 41 H 0.96995 * 120.00199 * 179.97438 * 16 15 13 42 42 H 1.08997 * 110.38044 * 95.28251 * 21 12 11 43 43 H 1.08999 * 110.38131 * 217.63465 * 21 12 11 44 44 H 1.08996 * 109.57800 * 7.95341 * 22 5 3 45 45 H 1.09004 * 109.57509 * 247.57387 * 22 5 3 46 46 H 1.08993 * 110.96854 * 261.73167 * 23 2 1 47 47 H 1.09001 * 110.96619 * 25.48926 * 23 2 1 48 48 H 1.09004 * 110.21734 * 215.57022 * 24 23 2 49 49 H 1.08991 * 110.32682 * 93.62733 * 24 23 2 50 50 H 0.97000 * 124.35038 * 197.01852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.6261 1.8470 -0.9782 5 7 1.8931 2.1920 1.0871 6 6 1.1218 1.7157 2.2436 7 6 0.0256 2.7365 2.5642 8 6 0.6627 4.1134 2.7760 9 6 1.3973 4.5373 1.5137 10 6 0.4069 4.7201 0.3441 11 6 -0.1224 6.1546 0.5631 12 7 0.8655 6.8640 1.3902 13 6 0.7599 8.1583 1.8248 14 1 1.5430 8.5902 2.4301 15 6 -0.3510 8.9169 1.4823 16 7 -1.3030 8.3921 0.7404 17 14 -0.4954 10.6822 2.0757 18 1 0.6515 11.4728 1.5610 19 1 -1.7653 11.2695 1.5779 20 1 -0.4874 10.7076 3.5605 21 6 1.9923 5.9528 1.6692 22 6 2.4839 3.5381 1.1416 23 6 2.0713 -0.7792 1.2210 24 6 3.3234 -1.4655 0.6224 25 7 3.0583 -1.5784 -0.8167 26 6 2.0595 -0.7622 -1.1947 27 8 1.6429 -0.6531 -2.3285 28 1 -0.3634 0.3898 -0.9508 29 1 -0.3633 -1.0184 0.1378 30 1 -0.3633 0.6285 0.8131 31 1 1.7827 1.6076 3.1036 32 1 0.6670 0.7537 2.0077 33 1 -0.4987 2.4348 3.4710 34 1 -0.6799 2.7857 1.7347 35 1 1.3673 4.0632 3.6061 36 1 -0.1156 4.8413 3.0048 37 1 -0.4046 3.9952 0.4086 38 1 0.9189 4.6398 -0.6149 39 1 -1.0819 6.1208 1.0790 40 1 -0.2331 6.6593 -0.3967 41 1 -2.0794 8.9221 0.5015 42 1 2.7955 6.1109 0.9495 43 1 2.3576 6.1008 2.6854 44 1 2.8978 3.7951 0.1665 45 1 3.2734 3.5604 1.8928 46 1 2.3450 -0.0991 2.0276 47 1 1.3472 -1.5179 1.5645 48 1 3.4563 -2.4549 1.0602 49 1 4.2093 -0.8548 0.7960 50 1 3.5419 -2.1663 -1.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054197533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:54 Heat of formation + Delta-G solvation = -28.445948 kcal Electronic energy + Delta-G solvation = -31390.358089 eV Core-core repulsion = 27418.503941 eV Total energy + Delta-G solvation = -3971.854148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.67078 -39.81764 -38.13543 -36.69579 -35.92568 -33.86299 -32.61436 -31.89882 -30.00773 -29.16743 -28.63991 -26.24590 -25.74481 -25.21288 -23.65948 -22.84702 -21.96673 -21.31748 -20.09426 -18.93397 -18.18085 -17.63062 -17.02705 -16.73251 -16.46279 -15.58393 -15.11038 -14.98785 -14.94451 -14.59076 -14.22857 -14.11988 -13.88724 -13.80455 -13.52654 -13.40473 -13.29096 -13.00906 -12.60562 -12.45410 -12.18944 -12.02653 -11.97031 -11.83196 -11.65169 -11.47511 -11.05358 -10.93427 -10.85828 -10.63436 -10.55783 -10.09517 -10.06191 -10.05045 -9.91337 -9.72728 -9.64316 -9.52497 -9.39241 -8.56162 -8.52452 -6.77987 -5.66819 -3.00195 2.26191 2.49333 2.90704 3.16134 3.42243 3.46672 3.47981 3.81492 3.98585 4.17349 4.43071 4.52802 4.59630 4.73326 4.88477 4.97385 5.03493 5.05499 5.16597 5.20604 5.25997 5.33313 5.35509 5.42315 5.47480 5.55138 5.57524 5.71920 5.84533 5.87813 5.90824 5.97020 6.01453 6.12512 6.33838 6.39334 6.45482 6.49823 6.56397 6.65991 6.70275 6.72130 6.83385 6.96289 7.34771 7.60609 7.70714 7.88079 8.02053 8.10049 8.30278 9.26335 9.86760 10.53656 11.44499 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002933 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.256957 B = 9545.041454 C = 9744.469502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.537 3.463 4 O -0.525 6.525 5 N -0.599 5.599 6 C 0.092 3.908 7 C -0.138 4.138 8 C -0.096 4.096 9 C -0.085 4.085 10 C -0.131 4.131 11 C 0.181 3.819 12 N -0.603 5.603 13 C -0.228 4.228 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.149 3.851 22 C 0.129 3.871 23 C -0.135 4.135 24 C 0.101 3.899 25 N -0.733 5.733 26 C 0.548 3.452 27 O -0.509 6.509 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.252 0.748 42 H 0.019 0.981 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -23.808 6.708 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C 0.323 3.677 4 O -0.401 6.401 5 N -0.333 5.333 6 C -0.031 4.031 7 C -0.176 4.176 8 C -0.133 4.133 9 C -0.087 4.087 10 C -0.169 4.169 11 C 0.056 3.944 12 N -0.329 5.329 13 C -0.356 4.356 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C 0.022 3.978 22 C 0.007 3.993 23 C -0.173 4.173 24 C -0.024 4.024 25 N -0.389 5.389 26 C 0.332 3.668 27 O -0.382 6.382 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.247 -23.242 5.611 24.712 hybrid contribution 0.117 0.762 0.126 0.781 sum 6.365 -22.480 5.737 24.057 Atomic orbital electron populations 1.21957 0.89541 1.03535 1.04787 1.21583 0.99791 0.94297 0.96735 1.19645 0.79635 0.85770 0.82683 1.90770 1.42522 1.74201 1.32564 1.48004 1.52822 1.16300 1.16125 1.22214 0.94015 0.98497 0.88336 1.22035 0.97651 0.95769 1.02186 1.21208 1.00123 0.95772 0.96206 1.21431 0.95726 0.95228 0.96284 1.22856 0.97802 0.99919 0.96356 1.21139 0.91957 0.85988 0.95270 1.44479 1.18323 1.09898 1.60206 1.18995 1.03669 0.86413 1.26516 0.90598 1.24785 0.97051 0.98363 1.00229 1.69965 1.10170 1.35658 1.41083 0.86223 0.76927 0.84582 0.78149 1.21242 1.21665 1.21248 1.21425 0.91313 0.87304 0.97770 1.21535 0.94928 0.79793 1.03001 1.23170 0.97569 0.99867 0.96649 1.22138 0.98166 1.01687 0.80429 1.46069 1.37542 1.44629 1.10669 1.19945 0.79358 0.78864 0.88656 1.90754 1.60973 1.65231 1.21248 0.90441 0.90951 0.89928 0.91129 0.88906 0.90821 0.90936 0.92439 0.90178 0.92375 0.92651 0.93808 0.94283 0.93782 0.96337 0.94266 0.88963 0.91640 0.87872 0.88453 0.89726 0.90907 0.74852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.12 37.16 0.30 -1.03 16 2 C -0.12 -1.24 0.54 -155.67 -0.08 -1.33 16 3 C 0.54 7.55 6.51 -10.98 -0.07 7.47 16 4 O -0.53 -9.95 15.58 5.56 0.09 -9.86 16 5 N -0.60 -7.32 2.80 -173.20 -0.48 -7.80 16 6 C 0.09 0.80 3.85 -3.71 -0.01 0.78 16 7 C -0.14 -1.48 5.77 -26.54 -0.15 -1.64 16 8 C -0.10 -1.37 4.69 -27.10 -0.13 -1.50 16 9 C -0.08 -1.40 0.55 -153.97 -0.08 -1.49 16 10 C -0.13 -2.54 5.67 -25.25 -0.14 -2.69 16 11 C 0.18 4.45 5.01 -2.95 -0.01 4.44 16 12 N -0.60 -15.27 3.39 -170.17 -0.58 -15.84 16 13 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 17 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.15 3.01 6.16 -2.75 -0.02 2.99 16 22 C 0.13 1.86 5.12 -4.10 -0.02 1.84 16 23 C -0.13 -0.79 4.95 -24.91 -0.12 -0.91 16 24 C 0.10 0.57 7.79 -2.93 -0.02 0.55 16 25 N -0.73 -6.51 6.24 -59.01 -0.37 -6.87 16 26 C 0.55 7.19 6.50 -10.86 -0.07 7.12 16 27 O -0.51 -9.00 17.77 5.56 0.10 -8.90 16 28 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 29 H 0.07 0.52 7.98 -51.93 -0.41 0.10 16 30 H 0.08 0.67 5.23 -51.93 -0.27 0.40 16 31 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 32 H 0.09 0.61 3.24 -51.93 -0.17 0.44 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 6.22 -51.93 -0.32 0.56 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.42 7.83 -51.93 -0.41 1.01 16 37 H 0.06 1.05 6.09 -51.93 -0.32 0.73 16 38 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 39 H 0.04 1.17 7.40 -51.93 -0.38 0.79 16 40 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 43 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 44 H 0.09 1.56 6.84 -51.93 -0.36 1.20 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.52 5.46 -51.93 -0.28 0.23 16 47 H 0.10 0.34 7.80 -51.93 -0.41 -0.06 16 48 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.41 2.96 8.96 -40.82 -0.37 2.60 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -36.64 371.22 -8.81 -45.45 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.81 Total: -0.04 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.90 Total: 7.79 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.86 Total: -57.24 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.19 Total: -18.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.64 -8.81 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.009 kcal (2) G-P(sol) polarization free energy of solvation -36.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds