Wall clock time and date at job start Tue Mar 31 2020 19:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 110.43030 * 2 1 4 4 O 1.21278 * 120.00237 * 248.64560 * 3 2 1 5 5 N 1.34779 * 119.99941 * 68.65067 * 3 2 1 6 6 C 1.46943 * 120.71194 * 355.57964 * 5 3 2 7 7 C 1.53178 * 108.92960 * 234.23936 * 6 5 3 8 8 C 1.53191 * 109.28511 * 304.67982 * 7 6 5 9 9 C 1.52076 * 109.67545 * 59.95990 * 8 7 6 10 10 C 1.54347 * 110.61051 * 64.19115 * 9 8 7 11 11 C 1.54469 * 102.85436 * 83.54030 * 10 9 8 12 12 N 1.47085 * 107.30336 * 21.47708 * 11 10 9 13 13 C 1.36940 * 125.63030 * 180.98107 * 12 11 10 14 14 H 1.07992 * 120.00161 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99449 * 359.74605 * 13 12 11 16 16 N 1.31618 * 120.00643 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99871 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99981 * 17 15 13 19 19 H 1.48501 * 109.47357 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47052 * 300.00540 * 17 15 13 21 21 C 1.47578 * 108.74640 * 1.24307 * 12 11 10 22 22 C 1.47107 * 120.71327 * 175.56452 * 5 3 2 23 23 C 1.54628 * 110.49091 * 122.54252 * 2 1 3 24 24 C 1.54830 * 101.60377 * 143.57180 * 23 2 1 25 25 N 1.46766 * 105.49495 * 334.56662 * 24 23 2 26 26 C 1.34415 * 111.29959 * 17.04137 * 25 24 23 27 27 O 1.21280 * 124.94345 * 179.62641 * 26 25 24 28 28 H 1.08996 * 109.47418 * 67.70674 * 1 2 3 29 29 H 1.09000 * 109.46729 * 187.70400 * 1 2 3 30 30 H 1.09003 * 109.46815 * 307.70112 * 1 2 3 31 31 H 1.09002 * 109.55879 * 114.40379 * 6 5 3 32 32 H 1.08993 * 109.56122 * 354.07759 * 6 5 3 33 33 H 1.08999 * 109.50567 * 184.74017 * 7 6 5 34 34 H 1.09006 * 109.50703 * 64.61902 * 7 6 5 35 35 H 1.09003 * 109.43720 * 299.90579 * 8 7 6 36 36 H 1.08991 * 109.41033 * 180.02562 * 8 7 6 37 37 H 1.08998 * 110.74166 * 325.19864 * 10 9 8 38 38 H 1.09004 * 110.89331 * 201.94780 * 10 9 8 39 39 H 1.08997 * 109.87610 * 262.04864 * 11 10 9 40 40 H 1.09001 * 109.87903 * 140.90411 * 11 10 9 41 41 H 0.96995 * 120.00199 * 179.97438 * 16 15 13 42 42 H 1.08997 * 110.38044 * 95.28251 * 21 12 11 43 43 H 1.08999 * 110.38131 * 217.63465 * 21 12 11 44 44 H 1.08996 * 109.57800 * 7.95341 * 22 5 3 45 45 H 1.09004 * 109.57509 * 247.57387 * 22 5 3 46 46 H 1.08993 * 110.96854 * 261.73167 * 23 2 1 47 47 H 1.09001 * 110.96619 * 25.48926 * 23 2 1 48 48 H 1.09004 * 110.21734 * 215.57022 * 24 23 2 49 49 H 1.08991 * 110.32682 * 93.62733 * 24 23 2 50 50 H 0.97000 * 124.35038 * 197.01852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.6261 1.8470 -0.9782 5 7 1.8931 2.1920 1.0871 6 6 1.1218 1.7157 2.2436 7 6 0.0256 2.7365 2.5642 8 6 0.6627 4.1134 2.7760 9 6 1.3973 4.5373 1.5137 10 6 0.4069 4.7201 0.3441 11 6 -0.1224 6.1546 0.5631 12 7 0.8655 6.8640 1.3902 13 6 0.7599 8.1583 1.8248 14 1 1.5430 8.5902 2.4301 15 6 -0.3510 8.9169 1.4823 16 7 -1.3030 8.3921 0.7404 17 14 -0.4954 10.6822 2.0757 18 1 0.6515 11.4728 1.5610 19 1 -1.7653 11.2695 1.5779 20 1 -0.4874 10.7076 3.5605 21 6 1.9923 5.9528 1.6692 22 6 2.4839 3.5381 1.1416 23 6 2.0713 -0.7792 1.2210 24 6 3.3234 -1.4655 0.6224 25 7 3.0583 -1.5784 -0.8167 26 6 2.0595 -0.7622 -1.1947 27 8 1.6429 -0.6531 -2.3285 28 1 -0.3634 0.3898 -0.9508 29 1 -0.3633 -1.0184 0.1378 30 1 -0.3633 0.6285 0.8131 31 1 1.7827 1.6076 3.1036 32 1 0.6670 0.7537 2.0077 33 1 -0.4987 2.4348 3.4710 34 1 -0.6799 2.7857 1.7347 35 1 1.3673 4.0632 3.6061 36 1 -0.1156 4.8413 3.0048 37 1 -0.4046 3.9952 0.4086 38 1 0.9189 4.6398 -0.6149 39 1 -1.0819 6.1208 1.0790 40 1 -0.2331 6.6593 -0.3967 41 1 -2.0794 8.9221 0.5015 42 1 2.7955 6.1109 0.9495 43 1 2.3576 6.1008 2.6854 44 1 2.8978 3.7951 0.1665 45 1 3.2734 3.5604 1.8928 46 1 2.3450 -0.0991 2.0276 47 1 1.3472 -1.5179 1.5645 48 1 3.4563 -2.4549 1.0602 49 1 4.2093 -0.8548 0.7960 50 1 3.5419 -2.1663 -1.4179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054197533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:53 Heat of formation + Delta-G solvation = -56.785141 kcal Electronic energy + Delta-G solvation = -31391.586969 eV Core-core repulsion = 27418.503941 eV Total energy + Delta-G solvation = -3973.083028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.57377 -40.98068 -39.44662 -37.67957 -37.22268 -35.11898 -33.99122 -33.07347 -31.66396 -30.43505 -29.75354 -27.44829 -27.16090 -26.07203 -25.41336 -23.65240 -22.83747 -22.40706 -21.93355 -19.99425 -19.48800 -18.63838 -18.44805 -17.86860 -17.50131 -16.86818 -16.52495 -16.33884 -15.86850 -15.80743 -15.66670 -15.15186 -14.96104 -14.78202 -14.62793 -14.49439 -14.43820 -14.16019 -13.92615 -13.60593 -13.45207 -13.29538 -13.19051 -13.00721 -12.85000 -12.72991 -12.44645 -12.19378 -12.14206 -12.13135 -12.00222 -11.84749 -11.68230 -11.53600 -11.30592 -11.16788 -11.01196 -10.70902 -10.67019 -10.10419 -9.60975 -8.89405 -7.84181 -5.20019 1.29847 1.44488 1.46613 1.48532 1.54632 2.02393 2.40681 2.49977 3.07907 3.33848 3.37960 3.43713 3.57698 3.71982 3.79562 3.90525 3.92960 4.07601 4.16752 4.25889 4.33057 4.39124 4.48012 4.54015 4.62491 4.63616 4.69375 4.74604 4.76341 4.81899 4.89697 4.90195 4.94088 4.96103 5.00343 5.07667 5.14504 5.18922 5.28746 5.44455 5.50458 5.52471 5.58124 5.64855 5.75813 5.81174 5.96091 6.18403 6.36583 7.05955 7.09412 7.19295 7.77656 8.43585 9.26242 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002933 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.256957 B = 9545.041454 C = 9744.469502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.531 3.469 4 O -0.587 6.587 5 N -0.593 5.593 6 C 0.088 3.912 7 C -0.134 4.134 8 C -0.092 4.092 9 C -0.067 4.067 10 C -0.116 4.116 11 C 0.195 3.805 12 N -0.622 5.622 13 C -0.240 4.240 14 H 0.085 0.915 15 C -0.069 4.069 16 N -0.954 5.954 17 Si 0.980 3.020 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.271 1.271 21 C 0.142 3.858 22 C 0.137 3.863 23 C -0.125 4.125 24 C 0.093 3.907 25 N -0.722 5.722 26 C 0.530 3.470 27 O -0.574 6.574 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.015 0.985 40 H -0.011 1.011 41 H 0.245 0.755 42 H 0.012 0.988 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.122 0.878 47 H 0.135 0.865 48 H 0.126 0.874 49 H 0.073 0.927 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -26.784 10.995 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C 0.318 3.682 4 O -0.467 6.467 5 N -0.324 5.324 6 C -0.032 4.032 7 C -0.172 4.172 8 C -0.130 4.130 9 C -0.069 4.069 10 C -0.155 4.155 11 C 0.070 3.930 12 N -0.348 5.348 13 C -0.369 4.369 14 H 0.103 0.897 15 C -0.262 4.262 16 N -0.603 5.603 17 Si 0.808 3.192 18 H -0.206 1.206 19 H -0.223 1.223 20 H -0.197 1.197 21 C 0.016 3.984 22 C 0.014 3.986 23 C -0.162 4.162 24 C -0.030 4.030 25 N -0.376 5.376 26 C 0.315 3.685 27 O -0.452 6.452 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.007 0.993 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.140 0.860 47 H 0.153 0.847 48 H 0.144 0.856 49 H 0.091 0.909 50 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 7.478 -26.269 9.993 29.083 hybrid contribution -0.187 1.711 -1.223 2.112 sum 7.291 -24.558 8.769 27.077 Atomic orbital electron populations 1.22011 0.88813 1.05567 1.03343 1.21601 1.00241 0.92106 0.98249 1.20340 0.78672 0.87223 0.81917 1.90748 1.45427 1.75670 1.34884 1.48063 1.52503 1.15000 1.16850 1.22612 0.93840 0.98696 0.88054 1.22029 0.97963 0.93991 1.03174 1.21181 0.99448 0.97052 0.95325 1.21335 0.95397 0.93999 0.96159 1.22648 0.98933 0.96824 0.97058 1.20790 0.91370 0.88486 0.92334 1.44761 1.19783 1.10165 1.60092 1.19455 1.03719 0.87699 1.26057 0.89671 1.25681 0.96985 1.02638 1.00863 1.70213 1.10575 1.36924 1.42613 0.85134 0.76456 0.79440 0.78195 1.20592 1.22337 1.19708 1.21652 0.89831 0.88605 0.98292 1.21296 0.94627 0.80482 1.02214 1.23375 0.98050 1.00233 0.94552 1.22505 0.98184 1.04159 0.78143 1.46193 1.35778 1.43049 1.12599 1.20553 0.80019 0.79353 0.88553 1.90708 1.63285 1.67418 1.23838 0.94334 0.87900 0.88203 0.87005 0.85993 0.87298 0.92968 0.89621 0.94115 0.90839 0.94591 0.96728 0.99256 0.94590 0.97006 0.92504 0.92232 0.88299 0.85969 0.84668 0.85573 0.90860 0.74221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.12 71.98 0.58 -1.76 16 2 C -0.12 -2.18 0.54 -52.93 -0.03 -2.21 16 3 C 0.53 14.37 6.51 87.66 0.57 14.94 16 4 O -0.59 -23.15 15.58 -3.02 -0.05 -23.20 16 5 N -0.59 -12.86 2.80 -820.28 -2.29 -15.16 16 6 C 0.09 1.04 3.85 86.35 0.33 1.37 16 7 C -0.13 -2.32 5.77 30.72 0.18 -2.15 16 8 C -0.09 -2.42 4.69 30.35 0.14 -2.28 16 9 C -0.07 -2.18 0.55 -51.83 -0.03 -2.21 16 10 C -0.12 -4.74 5.67 31.55 0.18 -4.57 16 11 C 0.20 10.28 5.01 86.77 0.43 10.72 16 12 N -0.62 -32.70 3.39 -692.31 -2.34 -35.05 16 13 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 14 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 15 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 16 N -0.95 -59.46 10.31 21.65 0.22 -59.24 16 17 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.14 5.75 6.16 86.63 0.53 6.29 16 22 C 0.14 3.72 5.12 86.01 0.44 4.16 16 23 C -0.13 -0.75 4.95 31.77 0.16 -0.59 16 24 C 0.09 0.62 7.79 86.95 0.68 1.30 16 25 N -0.72 -11.38 6.24 -459.21 -2.87 -14.24 16 26 C 0.53 13.71 6.50 87.90 0.57 14.28 16 27 O -0.57 -21.44 17.77 -3.03 -0.05 -21.49 16 28 H 0.04 0.95 8.02 -2.39 -0.02 0.93 16 29 H 0.10 1.08 7.98 -2.39 -0.02 1.06 16 30 H 0.10 1.26 5.23 -2.39 -0.01 1.25 16 31 H 0.11 0.60 7.93 -2.39 -0.02 0.59 16 32 H 0.12 0.80 3.24 -2.39 -0.01 0.79 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.14 6.22 -2.38 -0.01 1.13 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.41 7.83 -2.39 -0.02 1.39 16 37 H 0.07 2.75 6.09 -2.39 -0.01 2.73 16 38 H 0.04 1.58 7.88 -2.38 -0.02 1.56 16 39 H 0.01 0.84 7.40 -2.39 -0.02 0.82 16 40 H -0.01 -0.67 7.49 -2.39 -0.02 -0.68 16 41 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.01 0.51 8.01 -2.39 -0.02 0.49 16 43 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 44 H 0.06 2.06 6.84 -2.39 -0.02 2.04 16 45 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.12 0.34 5.46 -2.39 -0.01 0.32 16 47 H 0.14 -0.09 7.80 -2.39 -0.02 -0.11 16 48 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 50 H 0.42 5.44 8.96 -92.71 -0.83 4.61 16 Total: -1.00 -91.79 371.22 0.85 -90.94 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.13 Total: 7.87 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 6.07 Total: 20.90 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -7.28 Total: -123.68 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.10 Total: -44.69 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -91.79 0.85 -90.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.152 kcal (2) G-P(sol) polarization free energy of solvation -91.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds