Wall clock time and date at job start Tue Mar 31 2020 19:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.43584 * 2 1 4 4 O 1.21275 * 120.00117 * 237.59947 * 3 2 1 5 5 N 1.34781 * 119.99561 * 57.60264 * 3 2 1 6 6 C 1.46942 * 120.72294 * 4.64436 * 5 3 2 7 7 C 1.52757 * 109.18944 * 234.23914 * 6 5 3 8 8 C 1.53192 * 109.33047 * 304.89905 * 7 6 5 9 9 C 1.52065 * 109.68837 * 59.82374 * 8 7 6 10 10 C 1.54356 * 110.60288 * 64.19467 * 9 8 7 11 11 C 1.54465 * 102.87336 * 152.75947 * 10 9 8 12 12 N 1.47091 * 107.29654 * 338.51598 * 11 10 9 13 13 C 1.36937 * 125.62949 * 178.99955 * 12 11 10 14 14 H 1.08004 * 119.99661 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00097 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47321 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46675 * 120.00015 * 17 15 13 20 20 H 1.48500 * 109.47245 * 239.99794 * 17 15 13 21 21 C 1.47576 * 108.73813 * 359.02752 * 12 11 10 22 22 C 1.47112 * 120.71548 * 184.92434 * 5 3 2 23 23 C 1.54632 * 110.48688 * 237.46215 * 2 1 3 24 24 C 1.54479 * 101.76558 * 216.52507 * 23 2 1 25 25 N 1.46760 * 105.47205 * 25.41562 * 24 23 2 26 26 C 1.34422 * 111.30461 * 342.98347 * 25 24 23 27 27 O 1.21277 * 124.94357 * 180.44546 * 26 25 24 28 28 H 1.08998 * 109.47368 * 196.48176 * 1 2 3 29 29 H 1.09000 * 109.47334 * 316.48361 * 1 2 3 30 30 H 1.09002 * 109.46790 * 76.47648 * 1 2 3 31 31 H 1.09004 * 109.55383 * 354.11986 * 6 5 3 32 32 H 1.08996 * 109.55935 * 114.43843 * 6 5 3 33 33 H 1.08995 * 109.57553 * 184.88052 * 7 6 5 34 34 H 1.09001 * 109.37189 * 64.79228 * 7 6 5 35 35 H 1.08997 * 109.43739 * 299.75560 * 8 7 6 36 36 H 1.09005 * 109.39938 * 179.86547 * 8 7 6 37 37 H 1.09001 * 110.73608 * 271.10104 * 10 9 8 38 38 H 1.08998 * 110.73506 * 34.23079 * 10 9 8 39 39 H 1.08999 * 109.88408 * 97.94489 * 11 10 9 40 40 H 1.09001 * 109.87381 * 218.94610 * 11 10 9 41 41 H 0.96998 * 120.00496 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.37489 * 264.45101 * 21 12 11 43 43 H 1.08998 * 110.37538 * 142.10880 * 21 12 11 44 44 H 1.09002 * 109.57227 * 247.54014 * 22 5 3 45 45 H 1.09000 * 109.57987 * 7.79849 * 22 5 3 46 46 H 1.08997 * 110.96780 * 334.64520 * 23 2 1 47 47 H 1.08996 * 110.97179 * 98.40561 * 23 2 1 48 48 H 1.08994 * 110.24665 * 144.41242 * 24 23 2 49 49 H 1.08999 * 110.24446 * 266.41666 * 24 23 2 50 50 H 0.97002 * 124.35358 * 162.98569 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7953 1.7839 -0.8868 5 7 1.7054 2.2620 0.9856 6 6 0.8942 1.8011 2.1208 7 6 -0.3373 2.6951 2.2537 8 6 0.1071 4.1566 2.3692 9 6 0.8929 4.5527 1.1291 10 6 -0.0059 4.4962 -0.1245 11 6 0.6481 5.5333 -1.0639 12 7 1.4409 6.4449 -0.2247 13 6 2.1930 7.4955 -0.6782 14 1 2.7413 8.1088 0.0216 15 6 2.2508 7.7721 -2.0373 16 7 1.5831 7.0244 -2.8901 17 14 3.2763 9.2058 -2.6557 18 1 3.9250 9.8834 -1.5045 19 1 4.3194 8.7033 -3.5856 20 1 2.4003 10.1698 -3.3687 21 6 1.2923 6.0398 1.1865 22 6 2.1212 3.6725 0.9450 23 6 2.0712 -0.7791 -1.2212 24 6 3.3199 -1.4678 -0.6272 25 7 3.0563 -1.5828 0.8120 26 6 2.0594 -0.7654 1.1927 27 8 1.6453 -0.6567 2.3274 28 1 -0.3634 -0.9854 0.2915 29 1 -0.3634 0.7452 0.7076 30 1 -0.3633 0.2403 -0.9992 31 1 0.5792 0.7716 1.9501 32 1 1.4828 1.8571 3.0365 33 1 -0.8984 2.4137 3.1448 34 1 -0.9679 2.5750 1.3728 35 1 0.7367 4.2756 3.2510 36 1 -0.7710 4.7958 2.4617 37 1 0.0171 3.5023 -0.5714 38 1 -1.0283 4.7840 0.1204 39 1 1.2978 5.0283 -1.7787 40 1 -0.1235 6.0913 -1.5945 41 1 1.6238 7.2175 -3.8398 42 1 0.5091 6.6247 1.6688 43 1 2.2371 6.1587 1.7170 44 1 2.8331 3.8666 1.7474 45 1 2.5869 3.8885 -0.0165 46 1 1.3461 -1.5162 -1.5661 47 1 2.3471 -0.0989 -2.0268 48 1 3.4503 -2.4566 -1.0669 49 1 4.2059 -0.8572 -0.8008 50 1 3.5393 -2.1729 1.4115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054197534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:59 Heat of formation + Delta-G solvation = -24.226047 kcal Electronic energy + Delta-G solvation = -31905.216005 eV Core-core repulsion = 27933.544846 eV Total energy + Delta-G solvation = -3971.671160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69390 -39.68818 -38.15024 -36.73358 -35.73734 -33.68920 -32.71147 -31.83389 -29.85589 -29.01000 -28.53182 -26.27512 -25.63494 -25.00674 -23.65199 -22.40683 -21.90744 -21.32138 -20.06914 -18.79240 -17.97029 -17.65571 -17.51443 -16.65374 -16.10111 -15.56531 -15.09572 -14.92843 -14.83586 -14.51039 -14.32289 -13.99499 -13.87402 -13.63263 -13.32170 -13.06610 -12.89174 -12.78718 -12.51759 -12.42517 -12.16879 -12.09873 -11.88251 -11.60570 -11.55964 -11.28975 -11.04772 -10.93962 -10.80399 -10.75403 -10.51214 -10.09455 -9.98562 -9.86796 -9.67954 -9.62938 -9.58624 -9.42777 -9.37236 -8.51233 -8.35735 -6.73343 -5.62155 -2.95429 2.13283 2.63633 3.01929 3.20608 3.45358 3.50475 3.53099 3.95397 4.13784 4.37417 4.56764 4.63140 4.76192 4.96488 5.04498 5.11272 5.16065 5.23386 5.31342 5.41541 5.44887 5.46374 5.60825 5.64101 5.65592 5.71138 5.80812 5.83871 5.92292 6.03659 6.03975 6.09518 6.12191 6.27855 6.31670 6.39662 6.44407 6.52563 6.58361 6.64857 6.65410 6.81011 6.85135 6.96544 7.60093 7.65695 7.74582 7.87912 7.93771 8.27405 8.34969 9.30898 9.91444 10.58036 11.49366 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003777 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.801476 B = 7410.665409 C = 8344.986273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.532 3.468 4 O -0.524 6.524 5 N -0.596 5.596 6 C 0.077 3.923 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.085 4.085 10 C -0.128 4.128 11 C 0.180 3.820 12 N -0.604 5.604 13 C -0.227 4.227 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.919 5.919 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.148 3.852 22 C 0.134 3.866 23 C -0.118 4.118 24 C 0.099 3.901 25 N -0.726 5.726 26 C 0.533 3.467 27 O -0.516 6.516 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.250 0.750 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -20.176 8.084 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C 0.317 3.683 4 O -0.400 6.400 5 N -0.327 5.327 6 C -0.045 4.045 7 C -0.174 4.174 8 C -0.140 4.140 9 C -0.087 4.087 10 C -0.166 4.166 11 C 0.055 3.945 12 N -0.331 5.331 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.740 3.260 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.022 3.978 22 C 0.012 3.988 23 C -0.156 4.156 24 C -0.026 4.026 25 N -0.381 5.381 26 C 0.318 3.682 27 O -0.392 6.392 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.131 0.869 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.257 -19.727 7.919 21.377 hybrid contribution 0.763 0.539 -0.117 0.942 sum -1.494 -19.187 7.802 20.767 Atomic orbital electron populations 1.22074 0.89782 1.03960 1.04507 1.21615 0.99564 0.94609 0.96723 1.19595 0.81146 0.85667 0.81895 1.90742 1.35838 1.77022 1.36371 1.48112 1.52229 1.10363 1.22044 1.22567 0.92093 1.01045 0.88759 1.21920 0.97538 0.95809 1.02105 1.21333 0.99776 0.95539 0.97353 1.21391 0.95351 0.96499 0.95434 1.22785 0.97790 0.99999 0.96057 1.21145 0.93786 0.88769 0.90801 1.44521 1.55369 1.33429 0.99753 1.19086 1.21049 1.04181 0.91222 0.90505 1.24778 1.00406 0.99284 0.95899 1.69984 1.45285 1.39954 1.01494 0.86080 0.79511 0.81790 0.78607 1.20575 1.21818 1.21863 1.21417 0.97698 0.90204 0.88514 1.21462 0.95645 0.77534 1.04130 1.22730 0.96464 0.99355 0.97066 1.22176 0.99200 1.01669 0.79521 1.46139 1.37028 1.43633 1.11272 1.20350 0.79534 0.79473 0.88892 1.90690 1.61161 1.65977 1.21358 0.91168 0.89554 0.90483 0.85884 0.91729 0.91063 0.91411 0.92205 0.91616 0.92669 0.92678 0.93576 0.94303 0.93918 0.96043 0.94438 0.92219 0.87794 0.89179 0.86949 0.89780 0.90242 0.74866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.02 37.16 0.30 -1.16 16 2 C -0.12 -1.39 0.56 -155.67 -0.09 -1.47 16 3 C 0.53 8.46 6.56 -10.98 -0.07 8.39 16 4 O -0.52 -10.19 14.92 5.56 0.08 -10.10 16 5 N -0.60 -9.35 2.58 -173.45 -0.45 -9.79 16 6 C 0.08 1.02 4.01 -3.93 -0.02 1.01 16 7 C -0.14 -1.65 5.58 -26.76 -0.15 -1.80 16 8 C -0.10 -1.42 4.65 -27.11 -0.13 -1.55 16 9 C -0.08 -1.50 0.55 -154.10 -0.09 -1.58 16 10 C -0.13 -2.48 4.89 -25.25 -0.12 -2.60 16 11 C 0.18 4.52 4.96 -2.95 -0.01 4.51 16 12 N -0.60 -15.74 3.39 -170.32 -0.58 -16.32 16 13 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -27.84 10.31 55.49 0.57 -27.27 16 17 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C 0.15 3.11 6.15 -2.89 -0.02 3.09 16 22 C 0.13 2.43 5.06 -4.10 -0.02 2.41 16 23 C -0.12 -1.09 5.99 -25.10 -0.15 -1.24 16 24 C 0.10 0.76 7.78 -3.12 -0.02 0.74 16 25 N -0.73 -6.43 6.24 -59.21 -0.37 -6.80 16 26 C 0.53 6.26 6.77 -10.86 -0.07 6.19 16 27 O -0.52 -7.11 14.46 5.56 0.08 -7.03 16 28 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 29 H 0.09 0.93 3.92 -51.93 -0.20 0.73 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.12 1.56 2.19 -51.93 -0.11 1.45 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.84 6.59 -51.93 -0.34 0.49 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 38 H 0.05 1.00 7.98 -51.93 -0.41 0.59 16 39 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 40 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 43 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 44 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 45 H 0.10 2.33 6.67 -51.93 -0.35 1.98 16 46 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 47 H 0.11 1.23 6.96 -51.93 -0.36 0.87 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.41 2.80 8.96 -40.82 -0.37 2.44 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -34.29 368.98 -8.93 -43.23 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.90 Total: 2.85 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.91 Total: 7.97 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.82 Total: -60.18 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.16 Total: -17.13 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.29 -8.93 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.002 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds