Wall clock time and date at job start Tue Mar 31 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.43584 * 2 1 4 4 O 1.21275 * 120.00117 * 237.59947 * 3 2 1 5 5 N 1.34781 * 119.99561 * 57.60264 * 3 2 1 6 6 C 1.46942 * 120.72294 * 4.64436 * 5 3 2 7 7 C 1.52757 * 109.18944 * 234.23914 * 6 5 3 8 8 C 1.53192 * 109.33047 * 304.89905 * 7 6 5 9 9 C 1.52065 * 109.68837 * 59.82374 * 8 7 6 10 10 C 1.54356 * 110.60288 * 64.19467 * 9 8 7 11 11 C 1.54465 * 102.87336 * 152.75947 * 10 9 8 12 12 N 1.47091 * 107.29654 * 338.51598 * 11 10 9 13 13 C 1.36937 * 125.62949 * 178.99955 * 12 11 10 14 14 H 1.08004 * 119.99661 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00097 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99687 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47321 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46675 * 120.00015 * 17 15 13 20 20 H 1.48500 * 109.47245 * 239.99794 * 17 15 13 21 21 C 1.47576 * 108.73813 * 359.02752 * 12 11 10 22 22 C 1.47112 * 120.71548 * 184.92434 * 5 3 2 23 23 C 1.54632 * 110.48688 * 237.46215 * 2 1 3 24 24 C 1.54479 * 101.76558 * 216.52507 * 23 2 1 25 25 N 1.46760 * 105.47205 * 25.41562 * 24 23 2 26 26 C 1.34422 * 111.30461 * 342.98347 * 25 24 23 27 27 O 1.21277 * 124.94357 * 180.44546 * 26 25 24 28 28 H 1.08998 * 109.47368 * 196.48176 * 1 2 3 29 29 H 1.09000 * 109.47334 * 316.48361 * 1 2 3 30 30 H 1.09002 * 109.46790 * 76.47648 * 1 2 3 31 31 H 1.09004 * 109.55383 * 354.11986 * 6 5 3 32 32 H 1.08996 * 109.55935 * 114.43843 * 6 5 3 33 33 H 1.08995 * 109.57553 * 184.88052 * 7 6 5 34 34 H 1.09001 * 109.37189 * 64.79228 * 7 6 5 35 35 H 1.08997 * 109.43739 * 299.75560 * 8 7 6 36 36 H 1.09005 * 109.39938 * 179.86547 * 8 7 6 37 37 H 1.09001 * 110.73608 * 271.10104 * 10 9 8 38 38 H 1.08998 * 110.73506 * 34.23079 * 10 9 8 39 39 H 1.08999 * 109.88408 * 97.94489 * 11 10 9 40 40 H 1.09001 * 109.87381 * 218.94610 * 11 10 9 41 41 H 0.96998 * 120.00496 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.37489 * 264.45101 * 21 12 11 43 43 H 1.08998 * 110.37538 * 142.10880 * 21 12 11 44 44 H 1.09002 * 109.57227 * 247.54014 * 22 5 3 45 45 H 1.09000 * 109.57987 * 7.79849 * 22 5 3 46 46 H 1.08997 * 110.96780 * 334.64520 * 23 2 1 47 47 H 1.08996 * 110.97179 * 98.40561 * 23 2 1 48 48 H 1.08994 * 110.24665 * 144.41242 * 24 23 2 49 49 H 1.08999 * 110.24446 * 266.41666 * 24 23 2 50 50 H 0.97002 * 124.35358 * 162.98569 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7953 1.7839 -0.8868 5 7 1.7054 2.2620 0.9856 6 6 0.8942 1.8011 2.1208 7 6 -0.3373 2.6951 2.2537 8 6 0.1071 4.1566 2.3692 9 6 0.8929 4.5527 1.1291 10 6 -0.0059 4.4962 -0.1245 11 6 0.6481 5.5333 -1.0639 12 7 1.4409 6.4449 -0.2247 13 6 2.1930 7.4955 -0.6782 14 1 2.7413 8.1088 0.0216 15 6 2.2508 7.7721 -2.0373 16 7 1.5831 7.0244 -2.8901 17 14 3.2763 9.2058 -2.6557 18 1 3.9250 9.8834 -1.5045 19 1 4.3194 8.7033 -3.5856 20 1 2.4003 10.1698 -3.3687 21 6 1.2923 6.0398 1.1865 22 6 2.1212 3.6725 0.9450 23 6 2.0712 -0.7791 -1.2212 24 6 3.3199 -1.4678 -0.6272 25 7 3.0563 -1.5828 0.8120 26 6 2.0594 -0.7654 1.1927 27 8 1.6453 -0.6567 2.3274 28 1 -0.3634 -0.9854 0.2915 29 1 -0.3634 0.7452 0.7076 30 1 -0.3633 0.2403 -0.9992 31 1 0.5792 0.7716 1.9501 32 1 1.4828 1.8571 3.0365 33 1 -0.8984 2.4137 3.1448 34 1 -0.9679 2.5750 1.3728 35 1 0.7367 4.2756 3.2510 36 1 -0.7710 4.7958 2.4617 37 1 0.0171 3.5023 -0.5714 38 1 -1.0283 4.7840 0.1204 39 1 1.2978 5.0283 -1.7787 40 1 -0.1235 6.0913 -1.5945 41 1 1.6238 7.2175 -3.8398 42 1 0.5091 6.6247 1.6688 43 1 2.2371 6.1587 1.7170 44 1 2.8331 3.8666 1.7474 45 1 2.5869 3.8885 -0.0165 46 1 1.3461 -1.5162 -1.5661 47 1 2.3471 -0.0989 -2.0268 48 1 3.4503 -2.4566 -1.0669 49 1 4.2059 -0.8572 -0.8008 50 1 3.5393 -2.1729 1.4115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054197534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:57 Heat of formation + Delta-G solvation = -48.830361 kcal Electronic energy + Delta-G solvation = -31906.282928 eV Core-core repulsion = 27933.544846 eV Total energy + Delta-G solvation = -3972.738083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.71055 -40.96502 -39.48532 -37.82632 -37.07656 -35.06513 -34.03827 -33.28355 -31.55949 -30.42436 -29.72673 -27.52912 -27.23449 -26.03120 -25.40371 -23.32577 -23.08452 -22.41389 -21.96745 -20.06120 -19.34105 -18.64389 -18.51583 -18.46054 -17.27381 -16.89503 -16.66663 -16.12626 -16.07741 -16.03474 -15.59502 -15.27900 -14.96627 -14.79126 -14.68077 -14.35160 -14.09807 -13.96077 -13.85209 -13.58392 -13.46677 -13.32770 -13.22737 -13.20600 -12.89855 -12.80456 -12.38402 -12.27577 -12.14470 -12.05934 -11.98736 -11.91622 -11.82664 -11.59936 -11.36652 -11.10285 -10.83036 -10.71821 -10.55780 -10.17140 -9.65018 -8.88804 -7.84448 -5.19996 1.15604 1.42762 1.44876 1.49090 1.54843 1.97154 2.31218 2.48708 3.10741 3.26744 3.33673 3.45953 3.60581 3.68555 3.80938 3.86595 3.93837 4.04254 4.14396 4.24722 4.34374 4.34976 4.49868 4.58764 4.62623 4.67256 4.70101 4.72373 4.73951 4.83543 4.86992 4.92300 4.99927 5.01453 5.03441 5.06560 5.09721 5.19018 5.23342 5.44495 5.45217 5.48672 5.51366 5.65510 5.66629 5.77023 5.89387 6.19297 6.37209 7.03400 7.08393 7.09919 7.78064 8.43197 9.26224 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003777 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.801476 B = 7410.665409 C = 8344.986273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.522 3.478 4 O -0.572 6.572 5 N -0.596 5.596 6 C 0.077 3.923 7 C -0.129 4.129 8 C -0.097 4.097 9 C -0.069 4.069 10 C -0.109 4.109 11 C 0.193 3.807 12 N -0.625 5.625 13 C -0.241 4.241 14 H 0.084 0.916 15 C -0.068 4.068 16 N -0.952 5.952 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.290 1.290 21 C 0.142 3.858 22 C 0.140 3.860 23 C -0.118 4.118 24 C 0.099 3.901 25 N -0.713 5.713 26 C 0.529 3.471 27 O -0.537 6.537 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.076 0.924 39 H -0.004 1.004 40 H 0.002 0.998 41 H 0.244 0.756 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.123 0.877 47 H 0.089 0.911 48 H 0.125 0.875 49 H 0.064 0.936 50 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -22.080 10.298 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C 0.309 3.691 4 O -0.451 6.451 5 N -0.327 5.327 6 C -0.043 4.043 7 C -0.167 4.167 8 C -0.134 4.134 9 C -0.071 4.071 10 C -0.148 4.148 11 C 0.068 3.932 12 N -0.351 5.351 13 C -0.370 4.370 14 H 0.101 0.899 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.223 1.223 20 H -0.217 1.217 21 C 0.017 3.983 22 C 0.017 3.983 23 C -0.156 4.156 24 C -0.024 4.024 25 N -0.367 5.367 26 C 0.313 3.687 27 O -0.416 6.416 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.015 0.985 40 H 0.020 0.980 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.142 0.858 47 H 0.107 0.893 48 H 0.143 0.857 49 H 0.082 0.918 50 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.224 -21.662 10.192 24.156 hybrid contribution 1.136 1.126 -0.805 1.791 sum -2.088 -20.536 9.387 22.676 Atomic orbital electron populations 1.22116 0.88257 1.05198 1.04676 1.21653 1.00768 0.91720 0.98217 1.20429 0.80318 0.87360 0.80968 1.90722 1.37943 1.78328 1.38121 1.48209 1.52387 1.09129 1.22935 1.22766 0.92131 1.01964 0.87487 1.21929 0.97053 0.93942 1.03805 1.21326 0.99799 0.97080 0.95242 1.21292 0.95013 0.94209 0.96589 1.22587 0.98590 0.98066 0.95511 1.20800 0.91945 0.89215 0.91254 1.44809 1.55112 1.33030 1.02168 1.19520 1.21016 1.04756 0.91682 0.89857 1.25667 1.02027 1.02177 0.96229 1.70230 1.46941 1.41715 1.01267 0.85018 0.77684 0.78569 0.78142 1.18741 1.22278 1.21689 1.21661 0.98318 0.92505 0.85800 1.21139 0.95964 0.79750 1.01425 1.22800 0.97871 0.99412 0.95506 1.22289 0.97825 1.03455 0.78879 1.46109 1.35900 1.42771 1.11965 1.20337 0.80134 0.79810 0.88388 1.90668 1.62125 1.66858 1.21917 0.88725 0.90209 0.90139 0.84760 0.91737 0.87682 0.91331 0.90697 0.90303 0.92317 0.90521 0.98536 0.97977 0.94630 0.94612 0.94138 0.91659 0.92973 0.85843 0.89280 0.85729 0.91766 0.73480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.02 71.98 0.58 -2.01 16 2 C -0.12 -2.60 0.56 -52.93 -0.03 -2.63 16 3 C 0.52 16.93 6.56 87.66 0.58 17.51 16 4 O -0.57 -23.72 14.92 -3.02 -0.04 -23.76 16 5 N -0.60 -18.60 2.58 -821.05 -2.12 -20.72 16 6 C 0.08 1.86 4.01 86.21 0.35 2.21 16 7 C -0.13 -2.68 5.58 30.58 0.17 -2.51 16 8 C -0.10 -2.39 4.65 30.35 0.14 -2.25 16 9 C -0.07 -2.41 0.55 -51.92 -0.03 -2.43 16 10 C -0.11 -4.27 4.89 31.55 0.15 -4.12 16 11 C 0.19 10.30 4.96 86.76 0.43 10.73 16 12 N -0.62 -33.75 3.39 -692.77 -2.35 -36.10 16 13 C -0.24 -14.16 10.28 84.03 0.86 -13.30 16 14 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 15 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 16 N -0.95 -60.84 10.31 21.65 0.22 -60.61 16 17 Si 0.98 48.09 29.55 68.60 2.03 50.11 16 18 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 21 C 0.14 5.95 6.15 86.54 0.53 6.48 16 22 C 0.14 5.22 5.06 86.01 0.44 5.66 16 23 C -0.12 -2.01 5.99 31.65 0.19 -1.83 16 24 C 0.10 1.34 7.78 86.83 0.68 2.02 16 25 N -0.71 -11.01 6.24 -459.82 -2.87 -13.88 16 26 C 0.53 11.38 6.77 87.90 0.59 11.97 16 27 O -0.54 -13.59 14.46 -3.02 -0.04 -13.64 16 28 H 0.09 1.24 8.02 -2.39 -0.02 1.22 16 29 H 0.08 1.53 3.92 -2.39 -0.01 1.52 16 30 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.14 3.06 2.19 -2.39 -0.01 3.05 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.45 6.59 -2.39 -0.02 1.43 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.82 8.10 -2.38 -0.02 1.80 16 37 H 0.06 2.25 7.67 -2.39 -0.02 2.23 16 38 H 0.08 2.68 7.98 -2.39 -0.02 2.66 16 39 H 0.00 -0.23 7.38 -2.39 -0.02 -0.24 16 40 H 0.00 0.12 7.50 -2.39 -0.02 0.10 16 41 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.04 1.42 8.00 -2.39 -0.02 1.41 16 43 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 44 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 45 H 0.05 2.51 6.67 -2.39 -0.02 2.49 16 46 H 0.12 1.27 7.91 -2.39 -0.02 1.25 16 47 H 0.09 2.00 6.96 -2.39 -0.02 1.98 16 48 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.42 4.69 8.96 -92.71 -0.83 3.86 16 Total: -1.00 -80.79 368.98 1.05 -79.74 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.13 Total: 16.99 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.09 Total: 21.87 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -7.11 Total: -131.31 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.09 Total: -37.40 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.11 kcal Total: -80.79 1.05 -79.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.911 kcal (2) G-P(sol) polarization free energy of solvation -80.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds