Wall clock time and date at job start Tue Mar 31 2020 19:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53041 * 109.46118 * 2 1 4 4 C 1.53188 * 109.31493 * 178.62963 * 3 2 1 5 5 N 1.46916 * 108.77795 * 54.63391 * 4 3 2 6 6 C 1.34780 * 120.63565 * 126.37192 * 5 4 3 7 7 O 1.21353 * 119.99344 * 1.91878 * 6 5 4 8 8 C 1.49447 * 120.00315 * 181.92565 * 6 5 4 9 9 O 1.21348 * 120.00086 * 353.04861 * 8 6 5 10 10 N 1.34779 * 119.99852 * 173.04859 * 8 6 5 11 11 C 1.47892 * 134.33863 * 179.97438 * 10 8 6 12 12 C 1.52378 * 85.58672 * 156.51946 * 11 10 8 13 13 C 1.47885 * 134.34485 * 0.02562 * 10 8 6 14 14 C 1.53653 * 116.38808 * 141.36020 * 12 11 10 15 15 C 1.54598 * 102.73025 * 95.48764 * 14 12 11 16 16 N 1.47142 * 107.36727 * 20.75531 * 15 14 12 17 17 C 1.36937 * 125.58688 * 180.92938 * 16 15 14 18 18 H 1.07998 * 119.99853 * 185.15806 * 17 16 15 19 19 C 1.38813 * 120.00140 * 5.15764 * 17 16 15 20 20 N 1.31624 * 119.99673 * 5.36658 * 19 17 16 21 21 Si 1.86795 * 119.99813 * 185.08815 * 19 17 16 22 22 H 1.48495 * 109.47360 * 265.27809 * 21 19 17 23 23 H 1.48494 * 109.47203 * 25.28209 * 21 19 17 24 24 H 1.48503 * 109.46889 * 145.27977 * 21 19 17 25 25 C 1.47729 * 108.82164 * 1.18908 * 16 15 14 26 26 C 1.46934 * 118.73842 * 306.64352 * 5 4 3 27 27 C 1.52764 * 109.00616 * 53.31003 * 26 5 4 28 28 H 1.08999 * 109.46796 * 60.00181 * 1 2 3 29 29 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47286 * 300.00122 * 1 2 3 31 31 H 1.08994 * 109.45918 * 119.96771 * 2 1 3 32 32 H 1.09004 * 109.49786 * 58.67028 * 3 2 1 33 33 H 1.09004 * 109.52109 * 298.59666 * 3 2 1 34 34 H 1.08998 * 109.58356 * 294.84369 * 4 3 2 35 35 H 1.08999 * 109.70556 * 174.49354 * 4 3 2 36 36 H 1.08999 * 113.85354 * 42.35763 * 11 10 8 37 37 H 1.08996 * 113.97454 * 270.69394 * 11 10 8 38 38 H 1.08999 * 113.86034 * 89.31442 * 13 10 8 39 39 H 1.09006 * 113.85033 * 317.64476 * 13 10 8 40 40 H 1.08998 * 110.76144 * 337.17865 * 14 12 11 41 41 H 1.09003 * 110.75684 * 213.79464 * 14 12 11 42 42 H 1.09000 * 109.86832 * 261.30748 * 15 14 12 43 43 H 1.09006 * 109.97951 * 140.25963 * 15 14 12 44 44 H 0.97005 * 119.99276 * 179.72257 * 20 19 17 45 45 H 1.09002 * 110.39648 * 96.07477 * 25 16 15 46 46 H 1.09000 * 110.39839 * 218.48520 * 25 16 15 47 47 H 1.08999 * 109.58803 * 173.14197 * 26 5 4 48 48 H 1.08998 * 109.58854 * 293.57169 * 26 5 4 49 49 H 1.08994 * 109.56218 * 185.54899 * 27 26 5 50 50 H 1.09002 * 109.36003 * 65.49726 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 0.0346 5 7 4.0676 0.6239 -1.0823 6 6 4.9610 1.1279 -1.9567 7 8 5.3895 2.2532 -1.8054 8 6 5.4238 0.3011 -3.1124 9 8 5.0950 -0.8641 -3.1951 10 7 6.2065 0.8495 -4.0627 11 6 6.8307 0.3458 -5.3052 12 6 6.8452 1.8034 -5.7493 13 6 6.7835 2.1941 -4.2775 14 6 8.0860 2.2678 -6.5276 15 6 7.6405 2.1169 -8.0003 16 7 6.1692 2.1050 -8.0152 17 6 5.3846 1.9696 -9.1292 18 1 4.3112 2.0564 -9.0475 19 6 5.9689 1.7207 -10.3636 20 7 7.2654 1.5100 -10.4474 21 14 4.9139 1.6771 -11.9045 22 1 4.5230 0.2748 -12.1973 23 1 3.6941 2.4971 -11.6925 24 1 5.6859 2.2250 -13.0486 25 6 5.6773 2.2695 -6.6319 26 6 3.5669 -0.7493 -1.2317 27 6 2.0396 -0.7229 -1.2489 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8931 -0.5133 0.8903 32 1 1.6574 1.9640 0.8777 33 1 1.6976 1.9502 -0.9021 34 1 3.9145 1.0143 0.9779 35 1 3.9437 2.4589 -0.0637 36 1 6.1759 -0.2900 -5.9011 37 1 7.8232 -0.0808 -5.1608 38 1 7.7616 2.3329 -3.8169 39 1 6.0916 3.0095 -4.0665 40 1 8.9393 1.6241 -6.3142 41 1 8.3185 3.3079 -6.2989 42 1 8.0227 1.1814 -8.4089 43 1 8.0101 2.9565 -8.5891 44 1 7.6731 1.3320 -11.3095 45 1 5.4420 3.3153 -6.4343 46 1 4.8011 1.6435 -6.4634 47 1 3.9342 -1.1726 -2.1666 48 1 3.9096 -1.3564 -0.3938 49 1 1.6570 -1.7434 -1.2602 50 1 1.6973 -0.1957 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073040160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:04 Heat of formation + Delta-G solvation = 11.115922 kcal Electronic energy + Delta-G solvation = -30005.142589 eV Core-core repulsion = 26035.003972 eV Total energy + Delta-G solvation = -3970.138617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.15272 -40.01992 -38.23753 -37.83999 -35.72098 -34.09387 -32.24600 -31.39477 -29.86030 -28.85599 -28.42803 -26.58427 -25.91226 -24.74755 -23.66548 -23.46459 -22.05896 -20.48024 -20.23013 -19.18800 -18.31339 -17.32518 -17.14628 -16.79091 -16.23309 -15.84087 -15.10150 -15.00723 -14.87973 -14.67277 -14.50045 -14.39335 -13.90569 -13.71545 -13.64792 -13.32544 -13.15773 -12.93318 -12.60615 -12.29206 -12.17370 -12.09710 -11.89242 -11.79059 -11.60071 -11.44922 -11.19335 -11.06180 -10.92482 -10.77730 -10.70582 -10.54002 -10.42251 -10.10494 -10.06787 -9.85765 -9.66790 -9.02173 -8.95069 -8.64243 -8.61782 -6.84285 -5.71378 -3.06914 1.42477 2.16166 3.17255 3.23786 3.39984 3.45681 3.47409 4.04359 4.44541 4.45828 4.49229 4.53431 4.65974 4.84339 4.97247 5.01706 5.10771 5.15699 5.23806 5.33797 5.35252 5.39581 5.49551 5.51280 5.55140 5.60051 5.66110 5.66980 5.71379 5.74275 5.79816 5.83378 5.88211 5.91521 6.00103 6.13543 6.15100 6.20985 6.28266 6.45500 6.49196 6.64589 6.69718 6.99917 7.48518 7.51120 7.63196 7.67160 7.81578 8.00065 8.25082 9.20360 9.80479 10.45875 11.38571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002706 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.837706 B =10343.635081 C =11295.777636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.129 4.129 4 C 0.107 3.893 5 N -0.582 5.582 6 C 0.512 3.488 7 O -0.520 6.520 8 C 0.526 3.474 9 O -0.521 6.521 10 N -0.606 5.606 11 C 0.132 3.868 12 C -0.109 4.109 13 C 0.125 3.875 14 C -0.129 4.129 15 C 0.173 3.827 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.161 3.839 26 C 0.046 3.954 27 C -0.128 4.128 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.039 0.961 47 H 0.161 0.839 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -2.121 22.256 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.167 4.167 4 C -0.015 4.015 5 N -0.316 5.316 6 C 0.295 3.705 7 O -0.396 6.396 8 C 0.311 3.689 9 O -0.401 6.401 10 N -0.339 5.339 11 C 0.011 3.989 12 C -0.111 4.111 13 C 0.003 3.997 14 C -0.168 4.168 15 C 0.048 3.952 16 N -0.330 5.330 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.035 3.965 26 C -0.075 4.075 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.058 0.942 47 H 0.177 0.823 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.871 -2.236 22.196 23.068 hybrid contribution -0.621 -0.046 -0.589 0.857 sum -6.492 -2.282 21.608 22.677 Atomic orbital electron populations 1.21825 0.94994 1.01795 1.01791 1.21175 0.95779 0.95809 0.98648 1.21979 0.94690 0.97095 1.02904 1.21708 0.94095 0.97145 0.88547 1.47967 1.41361 1.15423 1.26844 1.20075 0.80362 0.86692 0.83386 1.90728 1.55768 1.18785 1.74317 1.19760 0.80131 0.86653 0.82327 1.90263 1.56742 1.17199 1.75861 1.50128 1.45896 1.15439 1.22469 1.23157 0.97808 0.97386 0.80552 1.22598 1.00246 0.94784 0.93434 1.23215 0.98622 0.84691 0.93219 1.22652 0.95120 1.00345 0.98683 1.21285 0.83625 1.01400 0.88843 1.44554 1.01895 1.85962 1.00601 1.19038 0.89822 1.41893 0.84833 0.90537 1.24794 0.96089 1.01757 0.97727 1.69951 1.08924 1.54392 1.23512 0.86112 0.79142 0.77617 0.82969 1.21644 1.20674 1.21667 1.21109 0.92969 0.97265 0.85144 1.23263 0.94287 0.81410 1.08493 1.21906 0.95542 1.01132 0.98057 0.92603 0.92583 0.92758 0.91124 0.90610 0.91318 0.91234 0.88805 0.88917 0.89083 0.89071 0.89021 0.91575 0.91600 0.92022 0.94934 0.93776 0.95544 0.94231 0.82308 0.91868 0.90574 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.73 2.68 -90.58 -0.24 -0.97 16 3 C -0.13 -1.03 5.36 -26.61 -0.14 -1.17 16 4 C 0.11 1.02 6.43 -3.72 -0.02 1.00 16 5 N -0.58 -6.95 2.98 -173.54 -0.52 -7.47 16 6 C 0.51 7.42 7.75 -11.58 -0.09 7.33 16 7 O -0.52 -8.26 14.63 5.49 0.08 -8.18 16 8 C 0.53 8.20 8.03 -11.59 -0.09 8.11 16 9 O -0.52 -8.61 13.75 5.50 0.08 -8.53 16 10 N -0.61 -9.27 3.62 -187.39 -0.68 -9.95 16 11 C 0.13 2.06 8.16 -3.60 -0.03 2.03 16 12 C -0.11 -1.77 0.99 -154.71 -0.15 -1.92 16 13 C 0.12 1.75 7.03 -3.59 -0.03 1.72 16 14 C -0.13 -2.17 6.35 -25.55 -0.16 -2.33 16 15 C 0.17 3.97 5.44 -2.85 -0.02 3.96 16 16 N -0.60 -14.91 3.41 -170.35 -0.58 -15.49 16 17 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.21 5.46 -17.43 -0.10 -0.30 16 20 N -0.92 -26.48 10.39 55.49 0.58 -25.91 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.16 3.24 6.65 -3.04 -0.02 3.22 16 26 C 0.05 0.50 6.20 -3.93 -0.02 0.47 16 27 C -0.13 -1.16 5.34 -26.83 -0.14 -1.30 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.98 7.01 -51.93 -0.36 0.62 16 36 H 0.09 1.62 8.13 -51.93 -0.42 1.20 16 37 H 0.09 1.24 8.04 -51.93 -0.42 0.82 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.31 7.59 -51.93 -0.39 0.92 16 40 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.58 6.96 -51.93 -0.36 1.22 16 43 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 47 H 0.16 2.09 3.79 -56.97 -0.22 1.88 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -30.96 388.47 -9.75 -40.70 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.46 Total: -0.74 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -1.07 Total: 12.80 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -1.20 Total: -58.82 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.16 Total: -16.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.96 -9.75 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073040160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.820 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds