Wall clock time and date at job start Tue Mar 31 2020 19:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53041 * 109.46118 * 2 1 4 4 C 1.53188 * 109.31493 * 178.62963 * 3 2 1 5 5 N 1.46916 * 108.77795 * 54.63391 * 4 3 2 6 6 C 1.34780 * 120.63565 * 126.37192 * 5 4 3 7 7 O 1.21353 * 119.99344 * 1.91878 * 6 5 4 8 8 C 1.49447 * 120.00315 * 181.92565 * 6 5 4 9 9 O 1.21348 * 120.00086 * 353.04861 * 8 6 5 10 10 N 1.34779 * 119.99852 * 173.04859 * 8 6 5 11 11 C 1.47892 * 134.33863 * 179.97438 * 10 8 6 12 12 C 1.52378 * 85.58672 * 156.51946 * 11 10 8 13 13 C 1.47885 * 134.34485 * 0.02562 * 10 8 6 14 14 C 1.53653 * 116.38808 * 141.36020 * 12 11 10 15 15 C 1.54598 * 102.73025 * 95.48764 * 14 12 11 16 16 N 1.47142 * 107.36727 * 20.75531 * 15 14 12 17 17 C 1.36937 * 125.58688 * 180.92938 * 16 15 14 18 18 H 1.07998 * 119.99853 * 185.15806 * 17 16 15 19 19 C 1.38813 * 120.00140 * 5.15764 * 17 16 15 20 20 N 1.31624 * 119.99673 * 5.36658 * 19 17 16 21 21 Si 1.86795 * 119.99813 * 185.08815 * 19 17 16 22 22 H 1.48495 * 109.47360 * 265.27809 * 21 19 17 23 23 H 1.48494 * 109.47203 * 25.28209 * 21 19 17 24 24 H 1.48503 * 109.46889 * 145.27977 * 21 19 17 25 25 C 1.47729 * 108.82164 * 1.18908 * 16 15 14 26 26 C 1.46934 * 118.73842 * 306.64352 * 5 4 3 27 27 C 1.52764 * 109.00616 * 53.31003 * 26 5 4 28 28 H 1.08999 * 109.46796 * 60.00181 * 1 2 3 29 29 H 1.08995 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47286 * 300.00122 * 1 2 3 31 31 H 1.08994 * 109.45918 * 119.96771 * 2 1 3 32 32 H 1.09004 * 109.49786 * 58.67028 * 3 2 1 33 33 H 1.09004 * 109.52109 * 298.59666 * 3 2 1 34 34 H 1.08998 * 109.58356 * 294.84369 * 4 3 2 35 35 H 1.08999 * 109.70556 * 174.49354 * 4 3 2 36 36 H 1.08999 * 113.85354 * 42.35763 * 11 10 8 37 37 H 1.08996 * 113.97454 * 270.69394 * 11 10 8 38 38 H 1.08999 * 113.86034 * 89.31442 * 13 10 8 39 39 H 1.09006 * 113.85033 * 317.64476 * 13 10 8 40 40 H 1.08998 * 110.76144 * 337.17865 * 14 12 11 41 41 H 1.09003 * 110.75684 * 213.79464 * 14 12 11 42 42 H 1.09000 * 109.86832 * 261.30748 * 15 14 12 43 43 H 1.09006 * 109.97951 * 140.25963 * 15 14 12 44 44 H 0.97005 * 119.99276 * 179.72257 * 20 19 17 45 45 H 1.09002 * 110.39648 * 96.07477 * 25 16 15 46 46 H 1.09000 * 110.39839 * 218.48520 * 25 16 15 47 47 H 1.08999 * 109.58803 * 173.14197 * 26 5 4 48 48 H 1.08998 * 109.58854 * 293.57169 * 26 5 4 49 49 H 1.08994 * 109.56218 * 185.54899 * 27 26 5 50 50 H 1.09002 * 109.36003 * 65.49726 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 0.0346 5 7 4.0676 0.6239 -1.0823 6 6 4.9610 1.1279 -1.9567 7 8 5.3895 2.2532 -1.8054 8 6 5.4238 0.3011 -3.1124 9 8 5.0950 -0.8641 -3.1951 10 7 6.2065 0.8495 -4.0627 11 6 6.8307 0.3458 -5.3052 12 6 6.8452 1.8034 -5.7493 13 6 6.7835 2.1941 -4.2775 14 6 8.0860 2.2678 -6.5276 15 6 7.6405 2.1169 -8.0003 16 7 6.1692 2.1050 -8.0152 17 6 5.3846 1.9696 -9.1292 18 1 4.3112 2.0564 -9.0475 19 6 5.9689 1.7207 -10.3636 20 7 7.2654 1.5100 -10.4474 21 14 4.9139 1.6771 -11.9045 22 1 4.5230 0.2748 -12.1973 23 1 3.6941 2.4971 -11.6925 24 1 5.6859 2.2250 -13.0486 25 6 5.6773 2.2695 -6.6319 26 6 3.5669 -0.7493 -1.2317 27 6 2.0396 -0.7229 -1.2489 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8931 -0.5133 0.8903 32 1 1.6574 1.9640 0.8777 33 1 1.6976 1.9502 -0.9021 34 1 3.9145 1.0143 0.9779 35 1 3.9437 2.4589 -0.0637 36 1 6.1759 -0.2900 -5.9011 37 1 7.8232 -0.0808 -5.1608 38 1 7.7616 2.3329 -3.8169 39 1 6.0916 3.0095 -4.0665 40 1 8.9393 1.6241 -6.3142 41 1 8.3185 3.3079 -6.2989 42 1 8.0227 1.1814 -8.4089 43 1 8.0101 2.9565 -8.5891 44 1 7.6731 1.3320 -11.3095 45 1 5.4420 3.3153 -6.4343 46 1 4.8011 1.6435 -6.4634 47 1 3.9342 -1.1726 -2.1666 48 1 3.9096 -1.3564 -0.3938 49 1 1.6570 -1.7434 -1.2602 50 1 1.6973 -0.1957 -2.1395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073040160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:03 Heat of formation + Delta-G solvation = -7.657522 kcal Electronic energy + Delta-G solvation = -30005.956667 eV Core-core repulsion = 26035.003972 eV Total energy + Delta-G solvation = -3970.952695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30912 -41.18394 -39.39042 -38.82163 -37.34545 -34.95688 -34.10844 -32.15942 -31.53658 -30.16877 -29.42537 -27.96618 -27.40887 -26.01968 -25.00873 -24.33213 -22.99053 -22.11751 -21.24589 -20.23723 -19.68362 -18.82325 -18.34406 -18.17274 -17.36668 -17.04174 -16.74130 -16.26349 -16.07273 -15.77523 -15.55404 -15.45220 -15.16365 -14.94084 -14.62512 -14.33712 -14.25778 -14.19964 -13.82820 -13.80561 -13.59394 -13.23690 -12.87149 -12.81840 -12.81484 -12.73656 -12.59741 -12.42973 -12.17744 -12.02051 -11.96696 -11.83190 -11.71091 -11.69008 -11.39951 -11.35729 -11.25262 -10.69418 -10.14259 -9.92816 -9.75806 -8.87180 -7.82787 -5.19915 0.27861 1.07967 1.46168 1.46895 1.56211 2.04590 2.17236 2.49324 2.97525 3.26080 3.38743 3.60775 3.69095 3.79045 3.82538 3.86403 4.03115 4.09929 4.16140 4.22314 4.30873 4.41519 4.52505 4.56351 4.59186 4.63867 4.72146 4.74690 4.75266 4.78615 4.87631 4.88089 4.94596 5.02785 5.04298 5.05041 5.11195 5.11451 5.14770 5.20467 5.34048 5.41480 5.45894 5.49419 5.68876 5.85116 6.00307 6.23593 6.36311 6.55516 6.86303 7.12286 7.78364 8.42169 9.25099 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002706 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.837706 B =10343.635081 C =11295.777636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.124 4.124 4 C 0.103 3.897 5 N -0.576 5.576 6 C 0.509 3.491 7 O -0.539 6.539 8 C 0.520 3.480 9 O -0.537 6.537 10 N -0.611 5.611 11 C 0.132 3.868 12 C -0.101 4.101 13 C 0.140 3.860 14 C -0.109 4.109 15 C 0.178 3.822 16 N -0.625 5.625 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.272 1.272 24 H -0.292 1.292 25 C 0.159 3.841 26 C 0.046 3.954 27 C -0.125 4.125 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.028 0.972 43 H -0.002 1.002 44 H 0.247 0.753 45 H 0.033 0.967 46 H 0.026 0.974 47 H 0.138 0.862 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -2.081 24.943 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.162 4.162 4 C -0.018 4.018 5 N -0.309 5.309 6 C 0.291 3.709 7 O -0.417 6.417 8 C 0.305 3.695 9 O -0.418 6.418 10 N -0.344 5.344 11 C 0.011 3.989 12 C -0.103 4.103 13 C 0.019 3.981 14 C -0.148 4.148 15 C 0.053 3.947 16 N -0.351 5.351 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.197 1.197 24 H -0.219 1.219 25 C 0.034 3.966 26 C -0.075 4.075 27 C -0.163 4.163 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.154 0.846 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.378 -2.197 24.929 25.826 hybrid contribution -0.555 -0.091 -1.394 1.503 sum -6.933 -2.287 23.536 24.642 Atomic orbital electron populations 1.21800 0.94210 1.02238 1.01923 1.21167 0.96375 0.95292 0.98167 1.21968 0.93466 0.97571 1.03183 1.21928 0.95086 0.96398 0.88347 1.48130 1.40193 1.15995 1.26600 1.19901 0.81058 0.86397 0.83515 1.90710 1.56876 1.19278 1.74833 1.20092 0.79908 0.86721 0.82734 1.90300 1.57102 1.17890 1.76479 1.50184 1.45965 1.15948 1.22304 1.23169 0.98625 0.96510 0.80567 1.22400 0.97934 0.95600 0.94339 1.23236 1.00081 0.83997 0.90816 1.22512 0.95967 1.02493 0.93812 1.21095 0.82766 0.98207 0.92638 1.44836 1.02746 1.85739 1.01781 1.19365 0.90283 1.41283 0.86240 0.90723 1.25576 0.97319 1.02134 1.00482 1.70161 1.10249 1.55388 1.23613 0.85131 0.77847 0.77518 0.79260 1.21451 1.19659 1.21850 1.21201 0.94136 0.97343 0.83923 1.23209 0.95401 0.80918 1.07966 1.21887 0.94235 1.01979 0.98240 0.93571 0.92026 0.91539 0.89679 0.88276 0.93000 0.89045 0.89797 0.91557 0.86353 0.85877 0.89123 0.88611 0.89473 0.95383 0.98375 0.94357 0.94953 0.95557 0.84564 0.90082 0.89279 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.16 2.68 -10.77 -0.03 -1.19 16 3 C -0.12 -1.71 5.36 30.67 0.16 -1.54 16 4 C 0.10 1.76 6.43 86.36 0.56 2.31 16 5 N -0.58 -13.03 2.98 -821.32 -2.45 -15.47 16 6 C 0.51 14.30 7.75 87.27 0.68 14.98 16 7 O -0.54 -16.48 14.63 -3.26 -0.05 -16.53 16 8 C 0.52 15.93 8.03 87.27 0.70 16.63 16 9 O -0.54 -17.78 13.75 -3.24 -0.04 -17.82 16 10 N -0.61 -18.00 3.62 -865.14 -3.13 -21.12 16 11 C 0.13 4.01 8.16 85.91 0.70 4.71 16 12 C -0.10 -3.16 0.99 -52.07 -0.05 -3.21 16 13 C 0.14 3.60 7.03 85.92 0.60 4.20 16 14 C -0.11 -3.48 6.35 31.36 0.20 -3.28 16 15 C 0.18 8.35 5.44 86.80 0.47 8.82 16 16 N -0.62 -31.67 3.41 -692.86 -2.36 -34.03 16 17 C -0.24 -13.69 10.27 84.03 0.86 -12.83 16 18 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 19 C -0.06 -3.51 5.46 84.86 0.46 -3.05 16 20 N -0.95 -56.23 10.39 21.65 0.23 -56.01 16 21 Si 0.97 46.06 29.56 68.60 2.03 48.08 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.16 6.45 6.65 86.36 0.57 7.02 16 26 C 0.05 0.93 6.20 86.22 0.53 1.46 16 27 C -0.13 -2.10 5.34 30.53 0.16 -1.94 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.63 7.01 -2.39 -0.02 1.61 16 36 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 37 H 0.12 2.96 8.04 -2.39 -0.02 2.94 16 38 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.09 2.41 7.59 -2.38 -0.02 2.39 16 40 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 41 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.03 1.49 6.96 -2.39 -0.02 1.47 16 43 H 0.00 -0.11 7.89 -2.38 -0.02 -0.12 16 44 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 45 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 47 H 0.14 3.56 3.79 -82.21 -0.31 3.25 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.81 388.47 2.09 -67.72 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.62 Total: 13.03 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 7.25 Total: 32.15 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -7.71 Total: -126.64 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.09 Total: -34.35 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -69.81 2.09 -67.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073040160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.062 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds