Wall clock time and date at job start Tue Mar 31 2020 19:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53043 * 109.45749 * 2 1 4 4 C 1.53198 * 109.31109 * 181.38330 * 3 2 1 5 5 N 1.46920 * 108.77716 * 305.36360 * 4 3 2 6 6 C 1.34773 * 120.63140 * 233.58859 * 5 4 3 7 7 O 1.21351 * 120.00030 * 8.71370 * 6 5 4 8 8 C 1.49449 * 119.99858 * 188.99125 * 6 5 4 9 9 O 1.21349 * 120.00134 * 6.50072 * 8 6 5 10 10 N 1.34781 * 119.99787 * 186.50296 * 8 6 5 11 11 C 1.47345 * 125.52259 * 359.68793 * 10 8 6 12 12 C 1.55163 * 104.79263 * 156.68966 * 11 10 8 13 13 C 1.54781 * 101.35931 * 37.54473 * 12 11 10 14 14 H 1.08998 * 113.40812 * 85.63815 * 13 12 11 15 15 C 1.53523 * 109.68818 * 212.75826 * 13 12 11 16 16 N 1.46652 * 107.05299 * 84.08484 * 15 13 12 17 17 C 1.36928 * 125.29079 * 197.35906 * 16 15 13 18 18 H 1.08002 * 120.00114 * 6.78266 * 17 16 15 19 19 C 1.38810 * 120.00272 * 186.78504 * 17 16 15 20 20 N 1.31616 * 120.00017 * 352.96021 * 19 17 16 21 21 Si 1.86795 * 120.00203 * 172.96778 * 19 17 16 22 22 H 1.48495 * 109.47579 * 94.97962 * 21 19 17 23 23 H 1.48503 * 109.47165 * 214.98229 * 21 19 17 24 24 H 1.48500 * 109.47114 * 334.97585 * 21 19 17 25 25 C 1.46498 * 109.41985 * 17.38262 * 16 15 13 26 26 C 1.47258 * 125.52191 * 179.97438 * 10 8 6 27 27 H 1.08996 * 111.94598 * 55.57022 * 26 10 8 28 28 C 1.46933 * 118.73960 * 53.85764 * 5 4 3 29 29 C 1.53041 * 109.45768 * 120.06014 * 2 1 3 30 30 H 1.09002 * 109.46643 * 60.00536 * 1 2 3 31 31 H 1.09000 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47265 * 300.00436 * 1 2 3 33 33 H 1.08997 * 109.45382 * 240.03006 * 2 1 3 34 34 H 1.08990 * 109.50143 * 61.43088 * 3 2 1 35 35 H 1.09005 * 109.52202 * 301.34610 * 3 2 1 36 36 H 1.08994 * 109.58333 * 185.57321 * 4 3 2 37 37 H 1.09002 * 109.69872 * 65.21846 * 4 3 2 38 38 H 1.08997 * 110.35684 * 275.63236 * 11 10 8 39 39 H 1.08998 * 110.35505 * 37.93229 * 11 10 8 40 40 H 1.09000 * 111.21952 * 279.46890 * 12 11 10 41 41 H 1.09001 * 110.92905 * 155.49446 * 12 11 10 42 42 H 1.09005 * 109.91696 * 324.73620 * 15 13 12 43 43 H 1.08997 * 109.91861 * 203.43321 * 15 13 12 44 44 H 0.97002 * 120.00465 * 180.02562 * 20 19 17 45 45 H 1.09008 * 109.70688 * 238.31727 * 25 16 15 46 46 H 1.08988 * 109.71677 * 117.77328 * 25 16 15 47 47 H 1.08995 * 109.58442 * 65.93003 * 28 5 4 48 48 H 1.08995 * 109.58902 * 186.35460 * 28 5 4 49 49 H 1.08998 * 109.50429 * 298.56938 * 29 2 1 50 50 H 1.08998 * 109.49523 * 58.64017 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4393 -0.0349 5 7 4.0679 0.6239 1.0819 6 6 4.9620 1.1277 1.9555 7 8 5.2456 2.3071 1.9213 8 6 5.6090 0.2325 2.9623 9 8 5.4206 -0.9655 2.9188 10 7 6.4016 0.7558 3.9186 11 6 6.7179 2.1857 4.0805 12 6 7.1162 2.3369 5.5725 13 6 7.8911 1.0194 5.8162 14 1 8.9439 1.0789 5.5403 15 6 7.6808 0.5561 7.2647 16 7 6.4188 -0.1903 7.2985 17 6 5.7018 -0.4811 8.4282 18 1 5.9977 -0.0618 9.3785 19 6 4.5945 -1.3147 8.3521 20 7 4.1508 -1.7141 7.1791 21 14 3.7341 -1.8697 9.9145 22 1 2.5912 -0.9651 10.1983 23 1 3.2352 -3.2573 9.7387 24 1 4.6919 -1.8281 11.0486 25 6 6.0449 -0.5769 5.9358 26 6 7.0965 -0.0095 4.9674 27 1 7.7294 -0.7921 4.5489 28 6 3.5756 -0.7531 1.2249 29 6 2.0398 -0.7228 1.2489 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8931 -0.5134 -0.8903 34 1 1.6978 1.9497 0.9023 35 1 1.6573 1.9645 -0.8774 36 1 3.9416 2.4596 0.0646 37 1 3.9164 1.0157 -0.9782 38 1 7.5493 2.4657 3.4336 39 1 5.8419 2.7953 3.8588 40 1 6.2354 2.3967 6.2118 41 1 7.7619 3.2031 5.7173 42 1 7.6187 1.4205 7.9258 43 1 8.5030 -0.0907 7.5707 44 1 3.3768 -2.2964 7.1259 45 1 5.0638 -0.1680 5.6939 46 1 6.0194 -1.6635 5.8558 47 1 3.9189 -1.3531 0.3822 48 1 3.9487 -1.1797 2.1559 49 1 1.6978 -0.1957 2.1395 50 1 1.6568 -1.7432 1.2604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076329326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:07 Heat of formation + Delta-G solvation = -40.156644 kcal Electronic energy + Delta-G solvation = -30995.130410 eV Core-core repulsion = 27022.768447 eV Total energy + Delta-G solvation = -3972.361962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.23534 -40.87582 -39.21618 -38.83125 -36.69928 -34.97723 -34.03633 -32.33386 -32.12070 -30.57200 -29.53322 -28.53943 -26.68701 -25.94285 -24.44039 -24.03098 -23.00063 -22.24737 -21.34108 -20.68435 -20.10232 -18.92758 -18.34269 -18.14247 -17.36919 -16.99202 -16.85921 -16.22526 -15.80298 -15.61370 -15.44983 -15.33140 -15.12220 -15.05029 -14.56321 -14.44847 -14.33200 -14.12514 -13.73055 -13.64841 -13.38773 -13.32117 -13.00611 -12.85014 -12.76396 -12.73215 -12.68603 -12.46918 -12.22272 -12.16868 -11.94272 -11.86889 -11.73918 -11.54746 -11.50194 -11.36557 -11.33414 -10.70157 -10.20268 -9.90593 -9.70159 -8.89367 -7.86062 -5.23054 0.31158 1.18207 1.43197 1.45363 1.54967 2.08211 2.29782 2.48317 3.05907 3.31180 3.48508 3.60868 3.75344 3.77462 3.82102 3.84674 3.98302 4.07468 4.28004 4.28721 4.31505 4.38501 4.45130 4.52994 4.58264 4.67731 4.71539 4.74527 4.84326 4.84927 4.86422 4.93752 4.97386 5.03686 5.05607 5.09072 5.12708 5.16415 5.17403 5.33057 5.39605 5.46162 5.48193 5.48856 5.53815 5.74217 5.96618 6.18615 6.25280 6.60364 6.89421 7.07858 7.77760 8.39316 9.23134 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003951 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.517278 B = 7085.325293 C = 8860.243278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.123 4.123 4 C 0.105 3.895 5 N -0.578 5.578 6 C 0.513 3.487 7 O -0.534 6.534 8 C 0.504 3.496 9 O -0.535 6.535 10 N -0.579 5.579 11 C 0.105 3.895 12 C -0.115 4.115 13 C -0.091 4.091 14 H 0.139 0.861 15 C 0.137 3.863 16 N -0.623 5.623 17 C -0.243 4.243 18 H 0.089 0.911 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.976 3.024 22 H -0.288 1.288 23 H -0.297 1.297 24 H -0.263 1.263 25 C 0.202 3.798 26 C 0.115 3.885 27 H 0.090 0.910 28 C 0.069 3.931 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.125 0.875 42 H 0.053 0.947 43 H 0.029 0.971 44 H 0.244 0.756 45 H 0.003 0.997 46 H -0.002 1.002 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.041 0.959 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 8.358 -16.805 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.161 4.161 4 C -0.016 4.016 5 N -0.311 5.311 6 C 0.295 3.705 7 O -0.412 6.412 8 C 0.288 3.712 9 O -0.414 6.414 10 N -0.311 5.311 11 C -0.016 4.016 12 C -0.152 4.152 13 C -0.110 4.110 14 H 0.157 0.843 15 C 0.012 3.988 16 N -0.350 5.350 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.259 4.259 20 N -0.597 5.597 21 Si 0.804 3.196 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.187 1.187 25 C 0.075 3.925 26 C 0.011 3.989 27 H 0.108 0.892 28 C -0.052 4.052 29 C -0.166 4.166 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.060 0.940 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.782 8.233 -16.854 18.774 hybrid contribution -1.011 -0.929 1.027 1.715 sum -0.230 7.304 -15.827 17.432 Atomic orbital electron populations 1.21800 0.94123 1.02200 1.01997 1.21158 0.96443 0.95438 0.97716 1.21968 0.93585 0.97313 1.03248 1.21980 0.95171 0.96429 0.88011 1.48069 1.40190 1.15825 1.26990 1.19837 0.81051 0.87271 0.82328 1.90658 1.63510 1.15803 1.71213 1.20208 0.80408 0.88096 0.82504 1.90525 1.60312 1.16554 1.74023 1.48566 1.44763 1.10606 1.27174 1.22755 1.02187 0.79220 0.97415 1.22843 1.00299 0.98001 0.94101 1.23057 1.00512 0.93775 0.93682 0.84292 1.21356 0.87624 0.94726 0.95107 1.44419 1.23353 1.64495 1.02688 1.19468 1.07171 1.23105 0.87468 0.89338 1.25727 0.99956 1.00436 0.99796 1.70275 1.26401 1.39414 1.23639 0.85095 0.78357 0.76857 0.79244 1.21520 1.22348 1.18720 1.20768 0.93177 0.95279 0.83228 1.22867 0.93765 0.95193 0.87069 0.89241 1.22875 0.94968 0.81022 1.06328 1.22065 0.94064 1.01904 0.98520 0.91002 0.92203 0.93802 0.89266 0.93246 0.87723 0.89408 0.88601 0.88356 0.90200 0.93112 0.85707 0.92926 0.95315 0.94718 0.97923 0.98337 0.89549 0.87332 0.93972 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.09 -1.53 2.68 -10.76 -0.03 -1.56 16 3 C -0.12 -2.13 5.36 30.67 0.16 -1.96 16 4 C 0.10 2.13 6.44 86.37 0.56 2.68 16 5 N -0.58 -16.29 2.97 -819.64 -2.43 -18.73 16 6 C 0.51 17.46 7.68 87.27 0.67 18.13 16 7 O -0.53 -18.32 13.33 -3.25 -0.04 -18.37 16 8 C 0.50 19.81 7.48 87.27 0.65 20.46 16 9 O -0.53 -23.56 13.27 -3.24 -0.04 -23.60 16 10 N -0.58 -21.59 2.83 -785.46 -2.22 -23.82 16 11 C 0.11 3.13 5.93 86.96 0.52 3.65 16 12 C -0.11 -3.23 6.33 31.94 0.20 -3.03 16 13 C -0.09 -2.80 3.97 -9.23 -0.04 -2.84 16 14 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 15 C 0.14 5.28 6.50 86.53 0.56 5.84 16 16 N -0.62 -32.43 3.37 -699.05 -2.36 -34.78 16 17 C -0.24 -13.83 10.23 84.03 0.86 -12.97 16 18 H 0.09 4.72 7.84 -2.91 -0.02 4.70 16 19 C -0.07 -3.88 5.48 84.86 0.46 -3.42 16 20 N -0.95 -60.22 10.29 21.65 0.22 -60.00 16 21 Si 0.98 46.99 29.56 68.60 2.03 49.01 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.20 10.65 4.63 86.65 0.40 11.05 16 26 C 0.11 4.54 3.80 45.90 0.17 4.71 16 27 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 28 C 0.07 1.93 6.01 86.51 0.52 2.45 16 29 C -0.13 -3.03 5.38 30.82 0.17 -2.87 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.91 7.01 -2.39 -0.02 1.89 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.56 6.38 -2.39 -0.02 2.55 16 40 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 41 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.05 1.91 7.95 -2.38 -0.02 1.89 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.00 0.16 7.09 -2.38 -0.02 0.14 16 46 H 0.00 -0.10 7.34 -2.39 -0.02 -0.11 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.11 3.99 4.31 -47.72 -0.21 3.79 16 49 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.88 380.33 2.39 -73.49 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.73 Total: 17.98 kcal Atomic # 6 Polarization: 32.31 SS G_CDS: 6.51 Total: 38.81 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -6.79 Total: -137.33 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.09 Total: -41.97 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.88 2.39 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076329326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.335 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds