Wall clock time and date at job start Tue Mar 31 2020 19:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99995 * 2 1 4 4 H 1.08997 * 110.64317 * 26.85496 * 3 2 1 5 5 C 1.54339 * 110.84906 * 263.68801 * 3 2 1 6 6 N 1.47023 * 107.26645 * 219.67132 * 5 3 2 7 7 C 1.36934 * 125.64571 * 178.84953 * 6 5 3 8 8 H 1.08006 * 119.99380 * 179.69973 * 7 6 5 9 9 C 1.38812 * 120.00171 * 359.97162 * 7 6 5 10 10 N 1.31618 * 119.99802 * 359.72156 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.72490 * 9 7 6 12 12 H 1.48496 * 109.47255 * 90.00372 * 11 9 7 13 13 H 1.48504 * 109.46816 * 209.99751 * 11 9 7 14 14 H 1.48501 * 109.47402 * 329.99749 * 11 9 7 15 15 C 1.47422 * 108.70197 * 358.59129 * 6 5 3 16 16 C 1.54911 * 104.83459 * 24.35377 * 15 6 5 17 17 H 1.08998 * 111.00372 * 81.06617 * 16 15 6 18 18 N 1.46500 * 111.00442 * 204.91974 * 16 15 6 19 19 C 1.34779 * 119.99785 * 273.54604 * 18 16 15 20 20 O 1.21278 * 120.00262 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00030 * 180.02562 * 19 18 16 22 22 H 1.08997 * 109.47432 * 299.99654 * 21 19 18 23 23 C 1.53004 * 109.47355 * 59.99726 * 21 19 18 24 24 N 1.46505 * 109.47322 * 179.97438 * 21 19 18 25 25 C 1.36335 * 125.63553 * 125.03423 * 24 21 19 26 26 C 1.50708 * 125.89414 * 359.96429 * 25 24 21 27 27 C 1.34851 * 108.22108 * 179.83067 * 25 24 21 28 28 C 1.40894 * 107.41140 * 0.42679 * 27 25 24 29 29 C 1.34849 * 107.42106 * 359.73111 * 28 27 25 30 30 C 1.50695 * 125.89503 * 179.97438 * 29 28 27 31 31 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47166 * 300.00353 * 1 2 3 33 33 H 1.09002 * 109.47183 * 60.00285 * 1 2 3 34 34 H 1.09003 * 109.98717 * 100.19848 * 5 3 2 35 35 H 1.08999 * 109.77998 * 339.03086 * 5 3 2 36 36 H 0.97000 * 119.99531 * 179.97438 * 10 9 7 37 37 H 1.09001 * 110.36657 * 143.18877 * 15 6 5 38 38 H 1.09002 * 110.36997 * 265.51399 * 15 6 5 39 39 H 0.96995 * 120.00584 * 93.54338 * 18 16 15 40 40 H 1.09001 * 109.47074 * 184.86230 * 23 21 19 41 41 H 1.09000 * 109.46747 * 304.86225 * 23 21 19 42 42 H 1.08999 * 109.47301 * 64.86243 * 23 21 19 43 43 H 1.08995 * 109.47061 * 84.91891 * 26 25 24 44 44 H 1.08996 * 109.47009 * 204.92189 * 26 25 24 45 45 H 1.09002 * 109.46586 * 324.91916 * 26 25 24 46 46 H 1.07991 * 126.29807 * 180.15839 * 27 25 24 47 47 H 1.08004 * 126.29318 * 179.73791 * 28 27 25 48 48 H 1.09000 * 109.47226 * 275.73522 * 30 29 28 49 49 H 1.08995 * 109.47252 * 35.73399 * 30 29 28 50 50 H 1.08996 * 109.47523 * 155.73416 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3785 1.7428 -1.4336 6 7 3.6685 2.4439 -1.3581 7 6 4.3541 2.9703 -2.4202 8 1 5.2962 3.4732 -2.2590 9 6 3.8353 2.8626 -3.7033 10 7 2.6873 2.2497 -3.8996 11 14 4.7669 3.5875 -5.1511 12 1 5.6907 2.5662 -5.7067 13 1 3.8029 4.0059 -6.2004 14 1 5.5473 4.7665 -4.6974 15 6 4.0988 2.4918 0.0511 16 6 3.3816 1.2957 0.7256 17 1 3.9158 0.3641 0.5390 18 7 3.2167 1.5252 2.1631 19 6 4.2040 1.1890 3.0168 20 8 5.2287 0.6962 2.5950 21 6 4.0341 1.4245 4.4955 22 1 3.8784 2.4876 4.6787 23 6 2.8238 0.6371 5.0017 24 7 5.2371 0.9778 5.2025 25 6 5.9890 1.7374 6.0490 26 6 5.7260 3.1754 6.4154 27 6 7.0070 0.9791 6.5041 28 6 6.8845 -0.2922 5.9094 29 6 5.7929 -0.2643 5.1182 30 6 5.2768 -1.4083 4.2840 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6144 2.4137 -1.8263 35 1 2.4700 0.8660 -2.0747 36 1 2.3247 2.1747 -4.7961 37 1 5.1802 2.3744 0.1218 38 1 3.7872 3.4294 0.5113 39 1 2.3970 1.9190 2.5005 40 1 2.6490 0.8744 6.0511 41 1 1.9445 0.9068 4.4168 42 1 3.0157 -0.4308 4.8978 43 1 5.0118 3.2159 7.2378 44 1 6.6590 3.6489 6.7208 45 1 5.3170 3.7011 5.5526 46 1 7.7774 1.2905 7.1940 47 1 7.5436 -1.1345 6.0597 48 1 5.8062 -1.4313 3.3315 49 1 5.4406 -2.3468 4.8134 50 1 4.2102 -1.2743 4.1037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082383403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:59 Heat of formation + Delta-G solvation = 4.776730 kcal Electronic energy + Delta-G solvation = -30391.107517 eV Core-core repulsion = 26420.694012 eV Total energy + Delta-G solvation = -3970.413505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.64964 -39.67335 -38.19859 -35.99155 -34.52154 -34.04322 -32.59990 -31.78387 -29.57247 -29.12689 -28.72134 -27.22587 -26.19189 -24.99618 -24.12801 -23.89744 -21.28168 -20.64312 -20.46076 -19.99455 -18.77941 -17.39884 -16.86219 -16.62723 -16.21224 -15.59979 -15.34480 -15.02089 -14.76220 -14.44856 -14.22414 -14.12149 -13.78002 -13.48873 -13.32148 -13.26727 -13.17200 -12.92258 -12.64809 -12.56997 -12.45960 -12.19827 -12.08538 -11.94828 -11.86875 -11.65369 -11.61295 -11.29796 -11.11806 -11.06094 -10.83379 -10.82020 -10.19261 -10.07953 -9.88117 -9.81795 -9.21113 -8.87245 -8.65219 -8.53178 -7.67038 -6.93919 -5.77460 -3.12657 2.19205 2.53652 2.70475 3.12518 3.20808 3.38688 3.43807 3.45256 4.04425 4.34466 4.46953 4.50945 4.56803 4.73407 5.02011 5.04650 5.13533 5.17969 5.21001 5.28618 5.35422 5.40921 5.43470 5.49127 5.56684 5.59366 5.63121 5.65511 5.73802 5.76716 5.80807 5.84730 5.86770 5.95980 6.06781 6.19759 6.37643 6.41461 6.47105 6.56496 6.74089 7.17239 7.17611 7.33727 7.36149 7.42172 7.53558 7.65764 7.79797 8.14548 8.20431 9.13373 9.73303 10.35749 11.33978 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003097 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.652542 B = 9040.208082 C =10067.233001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.057 3.943 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.105 0.895 18 N -0.711 5.711 19 C 0.501 3.499 20 O -0.509 6.509 21 C 0.112 3.888 22 H 0.120 0.880 23 C -0.164 4.164 24 N -0.425 5.425 25 C 0.003 3.997 26 C -0.082 4.082 27 C -0.191 4.191 28 C -0.211 4.211 29 C 0.054 3.946 30 C -0.084 4.084 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.396 0.604 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -2.294 21.116 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.202 4.202 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.123 0.877 18 N -0.363 5.363 19 C 0.284 3.716 20 O -0.383 6.383 21 C 0.005 3.995 22 H 0.138 0.862 23 C -0.222 4.222 24 N -0.103 5.103 25 C -0.107 4.107 26 C -0.139 4.139 27 C -0.216 4.216 28 C -0.235 4.235 29 C -0.057 4.057 30 C -0.141 4.141 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.230 0.770 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.133 -2.697 20.383 20.798 hybrid contribution -0.224 0.892 -0.719 1.167 sum -3.357 -1.806 19.664 20.030 Atomic orbital electron populations 1.22714 0.81675 1.02118 0.99760 1.87912 1.19117 1.27510 1.95040 1.23839 0.92759 0.84080 0.99572 0.91936 1.21565 0.88214 0.97337 0.88908 1.44249 1.21173 1.66684 1.00633 1.19076 1.02326 1.29664 0.84722 0.90150 1.24815 0.97376 1.00641 0.97411 1.69932 1.19129 1.47198 1.20702 0.86074 0.78618 0.78649 0.82155 1.21432 1.21631 1.20623 1.21810 0.97869 0.93659 0.86279 1.22417 0.96561 1.01027 0.76983 0.87742 1.45903 1.18872 1.64042 1.07484 1.20449 0.84226 0.79187 0.87738 1.90789 1.27332 1.41956 1.78203 1.21222 0.85914 1.01866 0.90469 0.86222 1.22266 0.95499 1.01778 1.02616 1.43527 1.21084 1.10363 1.35363 1.20210 0.96038 0.94669 0.99769 1.20272 1.02849 0.89774 1.01036 1.20560 1.00420 0.94550 1.06057 1.20554 0.99952 0.98796 1.04235 1.20192 0.96929 0.86533 1.02011 1.20474 1.00651 0.93677 0.99313 0.90182 0.94863 0.93594 0.93314 0.91863 0.93630 0.93116 0.96074 0.77049 0.90653 0.90190 0.90431 0.91540 0.90250 0.92162 0.85078 0.85084 0.89891 0.91289 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.54 16 2 O -0.38 -6.56 10.44 -35.23 -0.37 -6.92 16 3 C 0.06 1.01 3.06 -24.89 -0.08 0.94 16 4 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 5 C 0.17 3.92 5.16 -3.06 -0.02 3.90 16 6 N -0.60 -15.24 3.39 -170.06 -0.58 -15.82 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 11 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.76 6.93 -2.53 -0.02 2.75 16 16 C 0.14 2.42 3.04 -65.78 -0.20 2.22 16 17 H 0.10 2.16 7.73 -51.93 -0.40 1.76 16 18 N -0.71 -9.53 5.09 -51.73 -0.26 -9.79 16 19 C 0.50 7.10 6.32 -10.99 -0.07 7.03 16 20 O -0.51 -9.40 13.13 5.56 0.07 -9.32 16 21 C 0.11 1.21 3.17 -69.08 -0.22 0.99 16 22 H 0.12 1.03 6.72 -51.93 -0.35 0.68 16 23 C -0.16 -1.32 9.20 37.16 0.34 -0.98 16 24 N -0.43 -5.51 2.45 -102.18 -0.25 -5.76 16 25 C 0.00 0.03 6.89 -81.79 -0.56 -0.53 16 26 C -0.08 -0.72 9.86 36.01 0.36 -0.36 16 27 C -0.19 -2.47 10.77 -39.78 -0.43 -2.89 16 28 C -0.21 -2.90 10.76 -39.78 -0.43 -3.33 16 29 C 0.05 0.76 5.75 -81.79 -0.47 0.29 16 30 C -0.08 -1.08 8.52 36.00 0.31 -0.77 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.06 1.72 7.29 -51.93 -0.38 1.34 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 3.96 7.87 -40.82 -0.32 3.64 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.50 7.43 -51.93 -0.39 0.11 16 42 H 0.08 0.71 5.41 -51.93 -0.28 0.43 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.51 7.23 -51.93 -0.38 0.13 16 46 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 48 H 0.08 1.24 7.24 -51.93 -0.38 0.87 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.71 4.85 -51.93 -0.25 0.45 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -33.99 394.19 -8.64 -42.63 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.10 Total: 4.17 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.64 Total: 3.95 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.52 Total: -57.50 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.29 Total: -16.25 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.99 -8.64 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.403 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds