Wall clock time and date at job start Tue Mar 31 2020 19:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99995 * 2 1 4 4 H 1.08997 * 110.64317 * 26.85496 * 3 2 1 5 5 C 1.54339 * 110.84906 * 263.68801 * 3 2 1 6 6 N 1.47023 * 107.26645 * 219.67132 * 5 3 2 7 7 C 1.36934 * 125.64571 * 178.84953 * 6 5 3 8 8 H 1.08006 * 119.99380 * 179.69973 * 7 6 5 9 9 C 1.38812 * 120.00171 * 359.97162 * 7 6 5 10 10 N 1.31618 * 119.99802 * 359.72156 * 9 7 6 11 11 Si 1.86800 * 119.99727 * 179.72490 * 9 7 6 12 12 H 1.48496 * 109.47255 * 90.00372 * 11 9 7 13 13 H 1.48504 * 109.46816 * 209.99751 * 11 9 7 14 14 H 1.48501 * 109.47402 * 329.99749 * 11 9 7 15 15 C 1.47422 * 108.70197 * 358.59129 * 6 5 3 16 16 C 1.54911 * 104.83459 * 24.35377 * 15 6 5 17 17 H 1.08998 * 111.00372 * 81.06617 * 16 15 6 18 18 N 1.46500 * 111.00442 * 204.91974 * 16 15 6 19 19 C 1.34779 * 119.99785 * 273.54604 * 18 16 15 20 20 O 1.21278 * 120.00262 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00030 * 180.02562 * 19 18 16 22 22 H 1.08997 * 109.47432 * 299.99654 * 21 19 18 23 23 C 1.53004 * 109.47355 * 59.99726 * 21 19 18 24 24 N 1.46505 * 109.47322 * 179.97438 * 21 19 18 25 25 C 1.36335 * 125.63553 * 125.03423 * 24 21 19 26 26 C 1.50708 * 125.89414 * 359.96429 * 25 24 21 27 27 C 1.34851 * 108.22108 * 179.83067 * 25 24 21 28 28 C 1.40894 * 107.41140 * 0.42679 * 27 25 24 29 29 C 1.34849 * 107.42106 * 359.73111 * 28 27 25 30 30 C 1.50695 * 125.89503 * 179.97438 * 29 28 27 31 31 H 1.08994 * 109.47630 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47166 * 300.00353 * 1 2 3 33 33 H 1.09002 * 109.47183 * 60.00285 * 1 2 3 34 34 H 1.09003 * 109.98717 * 100.19848 * 5 3 2 35 35 H 1.08999 * 109.77998 * 339.03086 * 5 3 2 36 36 H 0.97000 * 119.99531 * 179.97438 * 10 9 7 37 37 H 1.09001 * 110.36657 * 143.18877 * 15 6 5 38 38 H 1.09002 * 110.36997 * 265.51399 * 15 6 5 39 39 H 0.96995 * 120.00584 * 93.54338 * 18 16 15 40 40 H 1.09001 * 109.47074 * 184.86230 * 23 21 19 41 41 H 1.09000 * 109.46747 * 304.86225 * 23 21 19 42 42 H 1.08999 * 109.47301 * 64.86243 * 23 21 19 43 43 H 1.08995 * 109.47061 * 84.91891 * 26 25 24 44 44 H 1.08996 * 109.47009 * 204.92189 * 26 25 24 45 45 H 1.09002 * 109.46586 * 324.91916 * 26 25 24 46 46 H 1.07991 * 126.29807 * 180.15839 * 27 25 24 47 47 H 1.08004 * 126.29318 * 179.73791 * 28 27 25 48 48 H 1.09000 * 109.47226 * 275.73522 * 30 29 28 49 49 H 1.08995 * 109.47252 * 35.73399 * 30 29 28 50 50 H 1.08996 * 109.47523 * 155.73416 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3785 1.7428 -1.4336 6 7 3.6685 2.4439 -1.3581 7 6 4.3541 2.9703 -2.4202 8 1 5.2962 3.4732 -2.2590 9 6 3.8353 2.8626 -3.7033 10 7 2.6873 2.2497 -3.8996 11 14 4.7669 3.5875 -5.1511 12 1 5.6907 2.5662 -5.7067 13 1 3.8029 4.0059 -6.2004 14 1 5.5473 4.7665 -4.6974 15 6 4.0988 2.4918 0.0511 16 6 3.3816 1.2957 0.7256 17 1 3.9158 0.3641 0.5390 18 7 3.2167 1.5252 2.1631 19 6 4.2040 1.1890 3.0168 20 8 5.2287 0.6962 2.5950 21 6 4.0341 1.4245 4.4955 22 1 3.8784 2.4876 4.6787 23 6 2.8238 0.6371 5.0017 24 7 5.2371 0.9778 5.2025 25 6 5.9890 1.7374 6.0490 26 6 5.7260 3.1754 6.4154 27 6 7.0070 0.9791 6.5041 28 6 6.8845 -0.2922 5.9094 29 6 5.7929 -0.2643 5.1182 30 6 5.2768 -1.4083 4.2840 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6144 2.4137 -1.8263 35 1 2.4700 0.8660 -2.0747 36 1 2.3247 2.1747 -4.7961 37 1 5.1802 2.3744 0.1218 38 1 3.7872 3.4294 0.5113 39 1 2.3970 1.9190 2.5005 40 1 2.6490 0.8744 6.0511 41 1 1.9445 0.9068 4.4168 42 1 3.0157 -0.4308 4.8978 43 1 5.0118 3.2159 7.2378 44 1 6.6590 3.6489 6.7208 45 1 5.3170 3.7011 5.5526 46 1 7.7774 1.2905 7.1940 47 1 7.5436 -1.1345 6.0597 48 1 5.8062 -1.4313 3.3315 49 1 5.4406 -2.3468 4.8134 50 1 4.2102 -1.2743 4.1037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082383403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:58 Heat of formation + Delta-G solvation = -18.091664 kcal Electronic energy + Delta-G solvation = -30392.099165 eV Core-core repulsion = 26420.694012 eV Total energy + Delta-G solvation = -3971.405153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60723 -40.95225 -39.60201 -37.52959 -35.77094 -35.25568 -33.65889 -33.46119 -30.79748 -30.21673 -29.88987 -28.81475 -27.52907 -26.37002 -25.32090 -24.94030 -22.64935 -22.20410 -21.72368 -21.21031 -19.87492 -19.03691 -18.19680 -17.91986 -17.30207 -17.15118 -16.47639 -16.32927 -16.06999 -15.81060 -15.60780 -15.31171 -15.09255 -14.72548 -14.51580 -14.27788 -14.22538 -14.07448 -13.94391 -13.64272 -13.46291 -13.31895 -13.26833 -13.11824 -12.99800 -12.92614 -12.77579 -12.71222 -12.60486 -12.49592 -12.32236 -12.09510 -11.98871 -11.89368 -11.66599 -11.04847 -10.79985 -10.59907 -10.17813 -9.51077 -8.99744 -8.62771 -7.90423 -5.28496 1.20165 1.43085 1.44305 1.46342 1.54628 1.76253 2.12826 2.14795 2.44175 2.75042 3.28827 3.39247 3.47897 3.71530 3.77209 3.83619 3.88933 3.93034 4.07614 4.19004 4.30240 4.33567 4.43767 4.44680 4.58925 4.59854 4.61310 4.65546 4.71790 4.78225 4.79126 4.83407 4.89296 4.90409 4.93575 5.02293 5.12673 5.23682 5.30026 5.33959 5.40600 5.42309 5.53177 5.63706 6.11024 6.21995 6.30342 6.32573 6.38936 6.57317 7.02284 7.11668 7.66996 8.28843 9.18805 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003097 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.652542 B = 9040.208082 C =10067.233001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.079 3.921 4 H 0.101 0.899 5 C 0.174 3.826 6 N -0.621 5.621 7 C -0.250 4.250 8 H 0.080 0.920 9 C -0.059 4.059 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.156 3.844 17 H 0.072 0.928 18 N -0.693 5.693 19 C 0.500 3.500 20 O -0.556 6.556 21 C 0.116 3.884 22 H 0.151 0.849 23 C -0.159 4.159 24 N -0.431 5.431 25 C 0.000 4.000 26 C -0.081 4.081 27 C -0.214 4.214 28 C -0.230 4.230 29 C 0.029 3.971 30 C -0.077 4.077 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.249 0.751 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.418 0.582 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.146 0.854 47 H 0.136 0.864 48 H 0.052 0.948 49 H 0.085 0.915 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -0.901 23.568 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.020 3.980 4 H 0.119 0.881 5 C 0.048 3.952 6 N -0.349 5.349 7 C -0.378 4.378 8 H 0.098 0.902 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.005 3.995 16 C 0.049 3.951 17 H 0.090 0.910 18 N -0.347 5.347 19 C 0.285 3.715 20 O -0.433 6.433 21 C 0.010 3.990 22 H 0.168 0.832 23 C -0.216 4.216 24 N -0.109 5.109 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.238 4.238 28 C -0.254 4.254 29 C -0.082 4.082 30 C -0.134 4.134 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.256 0.744 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.163 0.837 47 H 0.154 0.846 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.677 -1.292 22.890 23.399 hybrid contribution 0.273 0.426 -1.455 1.540 sum -4.404 -0.866 21.435 21.900 Atomic orbital electron populations 1.23007 0.79199 1.03926 1.00901 1.87901 1.21846 1.26866 1.94907 1.23456 0.93444 0.85404 0.95672 0.88136 1.21313 0.87027 0.94725 0.92164 1.44507 1.21864 1.66609 1.01947 1.19421 1.02662 1.29727 0.86007 0.90202 1.25646 0.98380 1.01363 0.99887 1.70149 1.20387 1.48201 1.20766 0.85069 0.77344 0.78094 0.78748 1.21535 1.21492 1.19312 1.21905 0.97001 0.95836 0.84726 1.21771 0.95735 0.98040 0.79535 0.91025 1.45579 1.19921 1.63926 1.05243 1.21165 0.83246 0.77785 0.89296 1.90792 1.29347 1.43907 1.79282 1.21443 0.86216 1.04088 0.87233 0.83191 1.22299 0.94784 1.00441 1.04113 1.43740 1.21754 1.10014 1.35419 1.20848 0.95297 0.96040 0.98771 1.20395 1.04072 0.87286 1.02025 1.20870 1.01478 0.94509 1.06992 1.20851 1.00211 0.99687 1.04618 1.20384 0.97684 0.87464 1.02636 1.20388 1.00484 0.94544 0.97961 0.88215 0.91270 0.94777 0.95846 0.96513 0.94145 0.95270 0.93985 0.74377 0.88797 0.87679 0.91811 0.89284 0.89375 0.91552 0.83657 0.84608 0.92886 0.89587 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.85 113.37 1.23 1.83 16 2 O -0.40 -13.32 10.44 -148.98 -1.55 -14.88 16 3 C 0.08 2.77 3.06 31.79 0.10 2.87 16 4 H 0.10 2.76 7.67 -2.39 -0.02 2.75 16 5 C 0.17 8.47 5.16 86.73 0.45 8.92 16 6 N -0.62 -32.46 3.39 -691.95 -2.35 -34.81 16 7 C -0.25 -14.30 10.28 84.03 0.86 -13.44 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 10 N -0.95 -56.68 10.31 21.65 0.22 -56.46 16 11 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.13 5.59 6.93 86.86 0.60 6.19 16 16 C 0.16 5.51 3.04 46.38 0.14 5.66 16 17 H 0.07 3.06 7.73 -2.39 -0.02 3.04 16 18 N -0.69 -16.93 5.09 -435.96 -2.22 -19.15 16 19 C 0.50 13.39 6.32 87.66 0.55 13.95 16 20 O -0.56 -20.81 13.13 -3.02 -0.04 -20.85 16 21 C 0.12 2.16 3.17 44.24 0.14 2.30 16 22 H 0.15 1.89 6.72 -2.39 -0.02 1.88 16 23 C -0.16 -1.96 9.20 71.98 0.66 -1.30 16 24 N -0.43 -10.43 2.45 -477.19 -1.17 -11.60 16 25 C 0.00 0.01 6.89 41.08 0.28 0.29 16 26 C -0.08 -1.14 9.86 71.24 0.70 -0.44 16 27 C -0.21 -5.32 10.77 22.14 0.24 -5.09 16 28 C -0.23 -6.30 10.76 22.14 0.24 -6.06 16 29 C 0.03 0.81 5.75 41.08 0.24 1.05 16 30 C -0.08 -2.00 8.52 71.23 0.61 -1.39 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.02 1.24 7.51 -2.39 -0.02 1.22 16 35 H 0.02 0.95 7.29 -2.39 -0.02 0.94 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 37 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.42 6.54 7.87 -92.71 -0.73 5.81 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.77 7.43 -2.39 -0.02 0.75 16 42 H 0.06 1.00 5.41 -2.39 -0.01 0.99 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 0.87 7.23 -2.39 -0.02 0.86 16 46 H 0.15 2.99 8.06 -2.92 -0.02 2.97 16 47 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 48 H 0.05 1.69 7.24 -2.39 -0.02 1.67 16 49 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.06 1.53 4.85 -2.39 -0.01 1.51 16 Total: -1.00 -79.28 394.19 2.64 -76.64 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.21 Total: 20.48 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 7.51 Total: 12.41 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -5.51 Total: -122.01 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.59 Total: -35.73 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -79.28 2.64 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.548 kcal (2) G-P(sol) polarization free energy of solvation -79.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds