Wall clock time and date at job start Tue Mar 31 2020 19:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00029 * 2 1 4 4 H 1.08998 * 110.64250 * 26.85434 * 3 2 1 5 5 C 1.54331 * 110.84850 * 263.69061 * 3 2 1 6 6 N 1.47021 * 107.26526 * 219.67676 * 5 3 2 7 7 C 1.36943 * 125.64958 * 178.84865 * 6 5 3 8 8 H 1.08002 * 119.99788 * 179.68595 * 7 6 5 9 9 C 1.38811 * 119.99622 * 359.96780 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.47423 * 108.70520 * 358.58242 * 6 5 3 16 16 C 1.54910 * 104.82934 * 24.35776 * 15 6 5 17 17 H 1.09007 * 111.00696 * 81.06300 * 16 15 6 18 18 N 1.46501 * 111.00763 * 204.87761 * 16 15 6 19 19 C 1.34777 * 119.99730 * 273.54930 * 18 16 15 20 20 O 1.21280 * 120.00598 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99564 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.47211 * 60.00005 * 21 19 18 23 23 C 1.53001 * 109.46964 * 299.99970 * 21 19 18 24 24 N 1.46504 * 109.47088 * 180.02562 * 21 19 18 25 25 C 1.36342 * 125.63472 * 59.69025 * 24 21 19 26 26 C 1.50694 * 125.89292 * 359.96630 * 25 24 21 27 27 C 1.34852 * 108.21356 * 179.83324 * 25 24 21 28 28 C 1.40888 * 107.41667 * 0.42425 * 27 25 24 29 29 C 1.34848 * 107.42085 * 359.73512 * 28 27 25 30 30 C 1.50700 * 125.89054 * 180.02562 * 29 28 27 31 31 H 1.09000 * 109.46774 * 59.99903 * 1 2 3 32 32 H 1.08992 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47055 * 300.00499 * 1 2 3 34 34 H 1.09003 * 109.99500 * 100.19961 * 5 3 2 35 35 H 1.09008 * 109.77945 * 339.03003 * 5 3 2 36 36 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 37 37 H 1.09000 * 110.36923 * 143.19518 * 15 6 5 38 38 H 1.08999 * 110.37105 * 265.52427 * 15 6 5 39 39 H 0.96993 * 120.00089 * 93.54442 * 18 16 15 40 40 H 1.08998 * 109.47422 * 60.00110 * 23 21 19 41 41 H 1.09007 * 109.47265 * 180.02562 * 23 21 19 42 42 H 1.09000 * 109.47185 * 300.00051 * 23 21 19 43 43 H 1.08998 * 109.47589 * 89.99464 * 26 25 24 44 44 H 1.08998 * 109.47111 * 210.00159 * 26 25 24 45 45 H 1.09004 * 109.47041 * 329.99182 * 26 25 24 46 46 H 1.07999 * 126.28985 * 180.16021 * 27 25 24 47 47 H 1.08006 * 126.28820 * 179.73751 * 28 27 25 48 48 H 1.08997 * 109.47241 * 269.96195 * 30 29 28 49 49 H 1.08995 * 109.47269 * 29.96454 * 30 29 28 50 50 H 1.08999 * 109.47016 * 149.96087 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3785 1.7428 -1.4335 6 7 3.6686 2.4437 -1.3581 7 6 4.3543 2.9702 -2.4202 8 1 5.2963 3.4731 -2.2590 9 6 3.8355 2.8625 -3.7032 10 7 2.6874 2.2497 -3.8996 11 14 4.7669 3.5873 -5.1511 12 1 5.6908 2.5660 -5.7066 13 1 3.8030 4.0058 -6.2003 14 1 5.5475 4.7664 -4.6974 15 6 4.0989 2.4917 0.0511 16 6 3.3817 1.2958 0.7256 17 1 3.9158 0.3640 0.5390 18 7 3.2176 1.5247 2.1633 19 6 4.2052 1.1880 3.0163 20 8 5.2296 0.6950 2.5939 21 6 4.0366 1.4241 4.4952 22 1 3.1741 0.8640 4.8565 23 6 3.8193 2.9167 4.7518 24 7 5.2401 0.9778 5.2013 25 6 6.5014 1.4553 5.0014 26 6 6.8945 2.5283 4.0191 27 6 7.3361 0.8037 5.8365 28 6 6.5632 -0.1163 6.5721 29 6 5.2848 0.0121 6.1627 30 6 4.1084 -0.7755 6.6793 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6145 2.4137 -1.8264 35 1 2.4700 0.8659 -2.0746 36 1 2.3251 2.1741 -4.7962 37 1 5.1803 2.3744 0.1218 38 1 3.7873 3.4294 0.5113 39 1 2.3982 1.9187 2.5012 40 1 2.9241 3.2492 4.2264 41 1 3.6978 3.0876 5.8215 42 1 4.6818 3.4768 4.3904 43 1 6.8320 3.5036 4.5019 44 1 7.9162 2.3550 3.6811 45 1 6.2196 2.5026 3.1635 46 1 8.4018 0.9560 5.9223 47 1 6.9277 -0.7990 7.3255 48 1 3.9842 -1.6778 6.0806 49 1 4.2838 -1.0507 7.7192 50 1 3.2062 -0.1675 6.6116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082383404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:04 Heat of formation + Delta-G solvation = 3.002139 kcal Electronic energy + Delta-G solvation = -30404.364591 eV Core-core repulsion = 26433.874134 eV Total energy + Delta-G solvation = -3970.490457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.65128 -39.68864 -38.20501 -35.99132 -34.51330 -34.04346 -32.61432 -31.78862 -29.56678 -29.12648 -28.72048 -27.24838 -26.19090 -24.94771 -24.14148 -23.91267 -21.29755 -20.64272 -20.41373 -20.02511 -18.77048 -17.41990 -16.92697 -16.61727 -16.18701 -15.53874 -15.43144 -15.00765 -14.71567 -14.45978 -14.31280 -14.01334 -13.80901 -13.40537 -13.32272 -13.26242 -13.20125 -12.95230 -12.66607 -12.51865 -12.40827 -12.30474 -12.06519 -11.95235 -11.86045 -11.67171 -11.62096 -11.29363 -11.17329 -11.06448 -10.83720 -10.79959 -10.19108 -10.08474 -9.89726 -9.83267 -9.20910 -8.87888 -8.65337 -8.53315 -7.68156 -6.94317 -5.77729 -3.13059 2.17865 2.52257 2.71136 3.11991 3.21946 3.38415 3.43489 3.44894 4.04753 4.32914 4.46992 4.50986 4.55657 4.73672 5.01291 5.03323 5.16577 5.20795 5.23758 5.28897 5.42266 5.43289 5.44424 5.49175 5.56343 5.59654 5.63399 5.65646 5.69986 5.73467 5.76703 5.84783 5.87003 5.95971 6.05976 6.13602 6.37348 6.40554 6.47193 6.54664 6.73388 7.17088 7.17534 7.33866 7.35720 7.41932 7.53065 7.65539 7.79749 8.13991 8.19424 9.12865 9.72966 10.35320 11.33696 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003155 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.857765 B = 8873.060560 C =10189.119279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.599 5.599 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.134 3.866 17 H 0.104 0.896 18 N -0.711 5.711 19 C 0.500 3.500 20 O -0.509 6.509 21 C 0.113 3.887 22 H 0.119 0.881 23 C -0.163 4.163 24 N -0.424 5.424 25 C 0.052 3.948 26 C -0.090 4.090 27 C -0.209 4.209 28 C -0.192 4.192 29 C 0.003 3.997 30 C -0.082 4.082 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.396 0.604 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -1.116 21.015 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.005 3.995 16 C 0.029 3.971 17 H 0.122 0.878 18 N -0.362 5.362 19 C 0.284 3.716 20 O -0.383 6.383 21 C 0.006 3.994 22 H 0.137 0.863 23 C -0.221 4.221 24 N -0.102 5.102 25 C -0.059 4.059 26 C -0.147 4.147 27 C -0.233 4.233 28 C -0.217 4.217 29 C -0.106 4.106 30 C -0.139 4.139 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.230 0.770 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.724 -1.527 20.282 20.521 hybrid contribution -0.286 0.658 -0.700 1.002 sum -3.010 -0.870 19.583 19.832 Atomic orbital electron populations 1.22718 0.81658 1.02128 0.99761 1.87919 1.19140 1.27526 1.95041 1.23840 0.92762 0.84088 0.99581 0.91911 1.21565 0.88225 0.97342 0.88896 1.44248 1.21163 1.66682 1.00635 1.19071 1.02330 1.29680 0.84711 0.90123 1.24818 0.97367 1.00634 0.97429 1.69927 1.19133 1.47174 1.20707 0.86076 0.78619 0.78642 0.82170 1.21437 1.21644 1.20610 1.21803 0.97819 0.93614 0.86292 1.22437 0.96622 1.01079 0.76994 0.87789 1.45912 1.18904 1.63922 1.07503 1.20493 0.84308 0.78973 0.87850 1.90803 1.27376 1.41913 1.78218 1.21230 0.88775 0.98536 0.90901 0.86282 1.22214 1.03992 0.92227 1.03693 1.43541 1.05869 1.30556 1.30269 1.20187 0.83267 1.01311 1.01124 1.20481 1.02961 0.94452 0.96823 1.20570 0.98713 1.02038 1.01992 1.20555 0.91971 1.04015 1.05119 1.20208 0.97086 0.96489 0.96833 1.20275 0.93817 0.98510 1.01336 0.93566 0.90185 0.94862 0.93288 0.91877 0.93619 0.93113 0.96010 0.77024 0.90084 0.90616 0.90476 0.91909 0.90519 0.90765 0.85062 0.85086 0.91326 0.90350 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.69 10.44 -35.23 -0.37 -7.05 16 3 C 0.06 1.02 3.06 -24.89 -0.08 0.94 16 4 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 5 C 0.17 3.91 5.16 -3.06 -0.02 3.90 16 6 N -0.60 -15.11 3.39 -170.06 -0.58 -15.69 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 11 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 16 C 0.13 2.40 3.04 -65.78 -0.20 2.20 16 17 H 0.10 2.19 7.73 -51.92 -0.40 1.79 16 18 N -0.71 -9.54 5.12 -51.72 -0.27 -9.80 16 19 C 0.50 7.13 6.08 -10.98 -0.07 7.06 16 20 O -0.51 -9.54 13.63 5.56 0.08 -9.46 16 21 C 0.11 1.21 3.18 -69.08 -0.22 0.99 16 22 H 0.12 1.01 6.64 -51.93 -0.34 0.66 16 23 C -0.16 -1.35 9.11 37.16 0.34 -1.01 16 24 N -0.42 -5.50 2.40 -102.18 -0.25 -5.75 16 25 C 0.05 0.73 5.76 -81.79 -0.47 0.26 16 26 C -0.09 -1.16 8.30 36.00 0.30 -0.86 16 27 C -0.21 -2.88 10.76 -39.78 -0.43 -3.30 16 28 C -0.19 -2.48 10.76 -39.78 -0.43 -2.90 16 29 C 0.00 0.04 6.89 -81.79 -0.56 -0.52 16 30 C -0.08 -0.71 9.93 36.01 0.36 -0.36 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 34 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.06 1.72 7.29 -51.92 -0.38 1.34 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 3.95 7.93 -40.82 -0.32 3.63 16 40 H 0.08 0.50 7.56 -51.93 -0.39 0.11 16 41 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.73 5.84 -51.93 -0.30 0.42 16 43 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.09 5.04 -51.93 -0.26 0.83 16 46 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 47 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.42 7.07 -51.93 -0.37 0.06 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -34.12 395.32 -8.68 -42.80 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.16 Total: 4.25 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.65 Total: 3.87 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.52 Total: -57.32 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.29 Total: -16.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.12 -8.68 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082383404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.799 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds